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1.
ACS Omega ; 7(45): 40853-40859, 2022 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-36406562

RESUMEN

Over the past few years, there has been significant interest in the potential of hybrid nanoparticle-acid fluid (HNAFs) for improved oil recovery. This comprehensive study investigates the effects of nanoparticles and acid on interfacial tension (IFT) to establish a relationship between brine properties and the oil/brine IFT. This investigation is one of the first regional studies conducted utilizing candidate field data from the Middle East. Based on the literature review and screening studies conducted, a seawater (SW)-based HNAF was formulated with nanoparticles (SiO2, Al2O3, and ZnO) and HCl to measure their effect on IFT. A total of 48 formulations of HNAFs, nanofluids with and without acid, were analyzed with crude oil from a candidate field. IFT measurements were subsequently conducted using the pendant drop method under ambient conditions and in a high-pressure, high-temperature reservoir environment. Results showcased that IFT reduction was observed by increasing the acid concentration with SiO2 and Al2O3, although a reverse trend was observed with ZnO. Moreover, it was observed that IFT varied with increasing concentrations of nanoparticles, and at certain acid concentrations, IFT reduced significantly with higher nanoparticle concentrations. From the Amott studies, a clear signature was achieved, with ZnO exhibiting a total of 31.4% oil recovery, followed by SiO2 (27.3%) and Al2O3 (23.7%). The results of this study may assist in defining a screening criterion for future displacement (oil recovery) studies involving the presented nanoparticles. The results also reveal further the mechanisms involved in IFT reduction by hybrid nano-acid fluids and their potential for significant applications in the Middle East.

2.
Arterioscler Thromb Vasc Biol ; 39(4): 675-684, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30786743

RESUMEN

Objective- Increasing evidence shows that resveratrol has antiatherogenic effects, but its underlying mechanisms are unknown. Thus, we evaluated the molecular mechanisms underlying the antiatherogenic effect of resveratrol. Approach and Results- Using the previously established mouse atherosclerosis model of partial ligation of the left carotid artery, we evaluated the role of resveratrol in antiatherosclerosis. We attempted to determine the mechanisms associated with focal adhesions using vascular endothelial cells. The results showed that resveratrol stimulated focal adhesion kinase cleavage via resveratrol-increased expression of lactoferrin in endothelial cells. Furthermore, we found that an N-terminal focal adhesion kinase fragment cleaved by resveratrol contained the FERM (band 4.1, ezrin, radixin, and moesin)-kinase domain. Furthermore, resveratrol inhibited lipopolysaccharide-stimulated adhesion of THP-1 human monocytes by decreased expression of ICAM-1 (intercellular adhesion molecule-1). A decreased ICAM-1 level was also observed in the left carotid artery of mice treated with resveratrol. To understand the relationship between resveratrol-induced antiinflammation and focal adhesion disruption, endothelial cells were transfected with FERM-kinase. Ectopically expressed FERM-kinase, the resveratrol-cleaved focal adhesion kinase fragment, was found in the nuclear fraction and inhibited the transcription level of icam-1 via the Nrf2 (nuclear factor erythroid 2-related factor 2)-antioxidant response element complex. Finally, ectopically expressed FERM-kinase blocked tumor necrosis factor-α- or IL- (interleukin) stimulated monocytic binding to endothelial cells. Conclusions- Our results show that resveratrol inhibits the expression of ICAM-1 via transcriptional regulation of the FERM-kinase and Nrf2 interaction, thereby blocking monocyte adhesion. These suppressive effects on the inflammatory mechanism suggest that resveratrol delayed the onset of atherosclerosis.


Asunto(s)
Aterosclerosis/prevención & control , Adhesión Celular/efectos de los fármacos , Monocitos/efectos de los fármacos , Resveratrol/farmacología , Transporte Activo de Núcleo Celular , Animales , Aterosclerosis/metabolismo , Aterosclerosis/patología , Arterias Carótidas/efectos de los fármacos , Arterias Carótidas/metabolismo , Estenosis Carotídea , Modelos Animales de Enfermedad , Regulación hacia Abajo/efectos de los fármacos , Endotelio Vascular/metabolismo , Inducción Enzimática , Quinasa 1 de Adhesión Focal/biosíntesis , Quinasa 1 de Adhesión Focal/metabolismo , Inflamación , Lactoferrina/metabolismo , Ligadura , Ratones , Ratones Noqueados para ApoE , Monocitos/metabolismo , Factor 2 Relacionado con NF-E2/metabolismo , Distribución Aleatoria , Transcripción Genética
3.
Int J Oncol ; 45(2): 558-66, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24841075

RESUMEN

Daurinol, a lignan from the ethnopharmacological plant Haplophyllum dauricum, was recently reported to be a novel topoisomerase II inhibitor and an alternative to the clinical anticancer agent etoposide based on a colorectal cancer model. In the present study, we elucidated the detailed biochemical mechanism underlying the inhibition of human topoisomerase IIα by daurinol based on a molecular docking study and in vitro biochemical experiments. The computational simulation predicted that daurinol binds to the ATP-binding pocket of topoisomerase IIα. In a biochemical assay, daurinol (10-100 µM) inhibited the catalytic activity of topo-isomerase IIα in an ATP concentration-dependent manner and suppressed the ATP hydrolysis activity of the enzyme. However, daurinol did not inhibit topoisomerase I activity, most likely because topoisomerase I does not contain an ATP-binding domain. We also evaluated the anti-proliferative activity of daurinol in ovarian, small cell lung and testicular cancer cells, common target cancers treated with etoposide. Daurinol potently inhibited SNU-840 human ovarian cancer cell proliferation through cell cycle arrest in S phase, while etoposide induced G2/M phase arrest. Daurinol induced the increased expression of cyclin E, cyclin A and E2F-1, which are important proteins regulating S phase initiation and progression. Daurinol did not induce abnormal cell and nuclear enlargement in SNU-840 cells, in contrast to etoposide. Based on these data, we suggest that daurinol is a potential anticancer drug candidate for the treatment of human ovarian cancer with few side effects.


Asunto(s)
Antineoplásicos Fitogénicos/farmacología , Benzodioxoles/farmacología , Puntos de Control del Ciclo Celular/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Naftalenos/farmacología , Neoplasias Ováricas/patología , Fase S/efectos de los fármacos , Inhibidores de Topoisomerasa II/farmacología , Antígenos de Neoplasias , Western Blotting , Línea Celular Tumoral , ADN-Topoisomerasas de Tipo II , Proteínas de Unión al ADN/antagonistas & inhibidores , Femenino , Humanos , Simulación del Acoplamiento Molecular
4.
Korean J Pediatr ; 57(2): 75-8, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24678331

RESUMEN

PURPOSE: This study aimed to investigate the clinical features of macrocephaly at birth in Korea using ultrasonography. METHODS: We retrospectively investigated the medical records of full-term birth neonates in Cheil General Hospital & Women's Healthcare Center from January 2000 to June 2012. The following parameters were recorded and analyzed: gestational age, sex, birth weight, height, occipitofrontal circumference (OFC), physical examination, perinatal problems, and ultrasonography results. Macrocephaly was diagnosed when the OFC was greater than two standard deviations, based on the 2007 Korean National Growth Charts. RESULTS: There were 75 neonates with macrocephaly at birth (52 boys and 23 girls), with a mean OFC of 38.1±0.49 cm. A comparison of the birth weight and height with the OFC value showed that height was correlated with OFC (r=0.35) but birth weight was not correlated with OFC (r=0.06). There were no remarkable findings in 56 cases (75%). Germinal matrix hemorrhage was identified in 10 cases (13%). An enlarged cerebrospinal fluid space was found in 5 cases (6.7%). There were 3 cases of mega-cisterna magna (4%), 1 case of ventriculomegaly, and 1 case of an enlarged interhemispheric space (6 mm) among these patients. In addition, a choroid plexus cyst was seen in 1 case. Mineralizing vasculopathy in both basal ganglia with no evidence of congenital infection was found in 2 cases and an asymptomatic subarachnoid hemorrhage was found in 1 case. CONCLUSION: Our results indicate that macrocephaly at birth has benign ultrasonography findings and shows a pattern of male dominance.

5.
Korean J Radiol ; 14(5): 786-8, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24043973

RESUMEN

Anomalies of renal vasculature combined with ectopic kidneys were found on a multi-detector CT scan. Knowledge of renal vascular variation is very important for surgical exploration, radiologic intervention and staging for urologic cancer. We present an extremely rare case of a right circumaortic renal vein combined with a right ectopic kidney. The right kidney was located at the level between the third and fifth lumbar vertebra. The right circumaortic renal vein crossed the aorta and returned to the inferior vena cava behind the aorta.


Asunto(s)
Enfermedades Renales/diagnóstico por imagen , Riñón/anomalías , Tomografía Computarizada Multidetector , Venas Renales/anomalías , Adulto , Humanos , Riñón/irrigación sanguínea , Riñón/diagnóstico por imagen , Enfermedades Renales/congénito , Masculino , Venas Renales/diagnóstico por imagen , Vena Cava Inferior/anomalías , Vena Cava Inferior/diagnóstico por imagen
6.
Korean J Radiol ; 14(5): 829-31, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24043981

RESUMEN

Oculomotor cistern is normal anatomic structure that is like an arachnoid-lined cerebrospinal fluid-filled sleeve, containing oculomotor nerve. We report a case of arachnoid cyst in oculomotor cistern, manifesting as oculomotor nerve palsy. The oblique sagittal MRI, parallel to the oculomotor nerve, showed well-defined and enlarged subarachnoid spaces along the course of oculomotor nerve. Simple fenestration was done with immediate regression of symptom. When a disease develops in oculomotor cistern, precise evaluation with proper MRI sequence should be performed to rule out tumorous condition and prevent injury of the oculomotor nerve.


Asunto(s)
Quistes Aracnoideos/diagnóstico , Enfermedades del Nervio Oculomotor/diagnóstico , Nervio Oculomotor/patología , Adulto , Quistes Aracnoideos/cirugía , Femenino , Estudios de Seguimiento , Humanos , Imagen por Resonancia Magnética , Procedimientos Neuroquirúrgicos , Enfermedades del Nervio Oculomotor/cirugía
7.
Chemosphere ; 90(5): 1603-9, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-22990023

RESUMEN

This study analyzed the concentrations of perfluorooctane sulfonate (PFOS), perfluorooctanoic acid (PFOA) and perfluorohexane sulfonate (PFHxS) in maternal and umbilical cord sera at delivery from the general population in Korea. Seventy samples were analyzed with ion-pairing and LC/MS/MS. PFOS, PFOA and PFHxS were detected in both maternal and umbilical cord sera. There was a high correlation of PFC concentrations between maternal and cord serum samples, implying transplacental transport. Ranking of transplacental transfer efficiency was PFOA>PFHxS>PFOS. Student's t-tests revealed that concentrations of maternal PFOA were related with decreases in birth weight, birth length and ponderal index, suggesting a possible impact on fetal growth. With multiple logistic regression models, maternal PFOS concentration showed a significant inverse association with ponderal index (OR=0.22; 95% CI, 0.05-0.90). Umbilical cord PFHxS concentration showed a significant inverse association with birth weight (OR=0.26; 95% CI, 0.08-0.85) or a marginally significant inverse association with birth length (OR=0.33; 95% CI, 0.09-1.17). This is the first report demonstrating an inverse association of birth outcomes with PFHxS exposure. Concentrations of maternal PFOA were decreased with parity, implying that delivery is one of the major routes for PFOA elimination in women. This study demonstrated prenatal exposure of PFCs through placental transfer which could result in possible developmental effects in the population sampled. Our results may provide data basis to conduct a larger scale investigation into developmental effects of PFCs in the future and contribute to understanding levels of PFC contaminations from a variety of populations in the globe.


Asunto(s)
Contaminantes Ambientales/sangre , Sangre Fetal/metabolismo , Fluorocarburos/sangre , Exposición Materna/estadística & datos numéricos , Adulto , Contaminación Ambiental/estadística & datos numéricos , Femenino , Humanos , Embarazo , República de Corea
8.
Physiol Plant ; 147(2): 218-33, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-22651245

RESUMEN

The nature and importance of the DNA repair system in the chloroplasts of higher plants under oxidative stress or UV radiation-induced genotoxicity was investigated via gain-of-functional approaches exploiting bacterial RecAs. For this purpose, transgenic tobacco (Nicotiana tabacum) plants and cell suspensions overexpressing Escherichia coli or Pseudomonas aeruginosa RecA fused to a chloroplast-targeting transit peptide were first produced. The transgenic tobacco plants maintained higher amounts of chloroplast DNA compared with wild-type (WT) upon treatments with methyl viologen (MV), a herbicide that generates reactive oxygen species (ROS) in chloroplasts. Consistent with these results, the transgenic tobacco leaves showed less bleaching than WT following MV exposure. Similarly, the MV-treated transgenic Arabidopsis plants overexpressing the chloroplast RecA homologue RECA1 showed weak bleaching, while the recA1 mutant showed opposite results upon MV treatment. In addition, when exposed to UV-C radiation, the dark-grown E. coli RecA-overexpressing transgenic tobacco cell suspensions, but not their WT counterparts, resumed growth and greening after the recovery period under light conditions. Measurements of UV radiation-induced chloroplast DNA damage using DraI assays (Harlow et al. 1994) with the chloroplast rbcL DNA probe and quantitative PCR analyses showed that the transgenic cell suspensions better repaired their UV-C radiation-induced chloroplast DNA lesions compared with WT. Taken all together, it was concluded that RecA-overexpressing transgenic plants are endowed with an increased chloroplast DNA maintenance capacity and enhanced repair activities, and consequently have a higher survival tolerance to genotoxic stresses. These observations are made possible by the functional compatibility of the bacterial RecAs in chloroplasts.


Asunto(s)
Daño del ADN , ADN de Cloroplastos/genética , Nicotiana/genética , Paraquat/farmacología , Rec A Recombinasas/metabolismo , Rayos Ultravioleta , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Reparación del ADN , ADN de Cloroplastos/efectos de los fármacos , ADN de Cloroplastos/efectos de la radiación , Datos de Secuencia Molecular , Plantas Modificadas Genéticamente/efectos de los fármacos , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/efectos de la radiación , Rec A Recombinasas/genética , Alineación de Secuencia , Nicotiana/efectos de los fármacos , Nicotiana/efectos de la radiación
9.
Neoplasia ; 13(11): 1043-57, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22131880

RESUMEN

We report that daurinol, a novel arylnaphthalene lignan, is a promising potential anticancer agent with adverse effects that are less severe than those of etoposide, a clinical anticancer agent. Despite its potent antitumor activity, clinical use of etoposide is limited because of its adverse effects, including myelosuppression and the development of secondary leukemia. Here, we comprehensively compared the mechanistic differences between daurinol and etoposide because they have similar chemical structures. Etoposide, a topoisomerase II poison, is known to attenuate cancer cell proliferation through the inhibition of DNA synthesis. Etoposide treatment induces G(2)/M arrest, severe DNA damage, and the formation of giant nuclei in HCT116 cells. We hypothesized that the induction of DNA damage and nuclear enlargement due to abnormal chromosomal conditions could give rise to genomic instability in both tumor cells and in actively dividing normal cells, resulting in the toxic adverse effects of etoposide. We found that daurinol is a catalytic inhibitor of human topoisomerase IIa, and it induces S-phase arrest through the enhanced expression of cyclins E and A and by activation of the ATM/Chk/Cdc25A pathway in HCT116 cells. However, daurinol treatment did not cause DNA damage or nuclear enlargement in vitro. Finally, we confirmed the in vivo antitumor effects and adverse effects of daurinol and etoposide in nude mice xenograft models. Daurinol displayed potent antitumor effects without any significant loss of body weight or changes in hematological parameters, whereas etoposide treatment led to decreased body weight and white blood cell, red blood cell, and hemoglobin concentration.


Asunto(s)
Carcinoma/patología , Proliferación Celular/efectos de los fármacos , Neoplasias Colorrectales/patología , Etopósido/farmacología , Enfermedades Hematológicas/inducido químicamente , Inhibidores de Topoisomerasa/efectos adversos , Inhibidores de Topoisomerasa/farmacología , Animales , Antineoplásicos/efectos adversos , Antineoplásicos/farmacología , Antineoplásicos/uso terapéutico , Benzodioxoles/efectos adversos , Benzodioxoles/farmacología , Benzodioxoles/uso terapéutico , Carcinoma/tratamiento farmacológico , Neoplasias Colorrectales/tratamiento farmacológico , Drogas en Investigación/efectos adversos , Drogas en Investigación/farmacología , Drogas en Investigación/uso terapéutico , Etopósido/efectos adversos , Etopósido/uso terapéutico , Células HCT116 , Enfermedades Hematológicas/epidemiología , Células Hep G2 , Humanos , Masculino , Ratones , Ratones Desnudos , Modelos Biológicos , Naftalenos/efectos adversos , Naftalenos/farmacología , Naftalenos/uso terapéutico , Inhibidores de Topoisomerasa/uso terapéutico , Células Tumorales Cultivadas , Ensayos Antitumor por Modelo de Xenoinjerto
10.
PLoS Pathog ; 7(10): e1002310, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22028654

RESUMEN

Fusarium graminearum is an important plant pathogen that causes head blight of major cereal crops. The fungus produces mycotoxins that are harmful to animal and human. In this study, a systematic analysis of 17 phenotypes of the mutants in 657 Fusarium graminearum genes encoding putative transcription factors (TFs) resulted in a database of over 11,000 phenotypes (phenome). This database provides comprehensive insights into how this cereal pathogen of global significance regulates traits important for growth, development, stress response, pathogenesis, and toxin production and how transcriptional regulations of these traits are interconnected. In-depth analysis of TFs involved in sexual development revealed that mutations causing defects in perithecia development frequently affect multiple other phenotypes, and the TFs associated with sexual development tend to be highly conserved in the fungal kingdom. Besides providing many new insights into understanding the function of F. graminearum TFs, this mutant library and phenome will be a valuable resource for characterizing the gene expression network in this fungus and serve as a reference for studying how different fungi have evolved to control various cellular processes at the transcriptional level.


Asunto(s)
Fusarium/genética , Genoma Fúngico , Enfermedades de las Plantas/genética , Triticum/microbiología , Fusarium/metabolismo , Fusarium/patogenicidad , Expresión Génica , Regulación Fúngica de la Expresión Génica , Mutación , Fenotipo , Enfermedades de las Plantas/microbiología , Fenómenos Fisiológicos de las Plantas , Sexo , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
11.
DNA Cell Biol ; 30(8): 623-9, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21663531

RESUMEN

Arctigenin is a natural plant lignan previously shown to induce G(2)/M arrest in SW480 human colon cancer cells as well as AGS human gastric cancer cells, suggesting its use as a possible cancer chemopreventive agent. Changes in cell and nuclear size often correlate with the functionality of cancer-treating agents. Here, we report that arctigenin induces cell and nuclear enlargement of SW480 cells. Arctigenin clearly induced the formation of giant nuclear shapes in SW480, as demonstrated by fluorescence microscopic observation and quantitative determination of nuclear size. Cell and nuclear size were further assessed by flow cytometric analysis of light scattering and fluorescence pulse width after propidium iodide staining. FSC-H and FL2-W values (parameters referring to cell and nuclear size, respectively) significantly increased after arctigenin treatment; the mean values of FSC-H and FL2-W in arctigenin-treated SW480 cells were 572.6 and 275.1, respectively, whereas those of control cells were 482.0 and 220.7, respectively. Our approach may provide insights into the mechanism behind phytochemical-induced cell and nuclear enlargement as well as functional studies on cancer-treating agents.


Asunto(s)
Tamaño del Núcleo Celular/efectos de los fármacos , Núcleo Celular/efectos de los fármacos , Tamaño de la Célula/efectos de los fármacos , ADN/metabolismo , Citometría de Flujo , Furanos/farmacología , Lignanos/farmacología , Saussurea/química , Antineoplásicos/aislamiento & purificación , Antineoplásicos/farmacología , División Celular/efectos de los fármacos , Línea Celular Tumoral , Núcleo Celular/metabolismo , Furanos/aislamiento & purificación , Fase G2/efectos de los fármacos , Humanos , Lignanos/aislamiento & purificación , Microscopía Fluorescente
12.
New Phytol ; 190(1): 57-74, 2011 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-21231936

RESUMEN

Arabidopsis RNA polymerase II (RNAPII) C-terminal domain (CTD) phosphatases regulate stress-responsive gene expression and plant development via the dephosphorylation of serine (Ser) residues of the CTD. Some of these phosphatases (CTD phosphatase-like 1 (CPL1) to CPL3) negatively regulate ABA and stress responses. Here, we isolated AtCPL5, a cDNA encoding a protein containing two CTD phosphatase domains (CPDs). To characterize AtCPL5, we analyzed the gene expression patterns and subcellular protein localization, investigated various phenotypes of AtCPL5-overexpressors and knockout mutants involved in ABA and drought responses, performed microarray and RNA hybridization analyses using AtCPL5-overexpressors, and assessed the CTD phosphatase activities of the purified AtCPL5 and each CPD of the protein. Transcripts of the nucleus-localized AtCPL5 were induced by ABA and drought. AtCPL5-overexpressors exhibited ABA-hypersensitive phenotypes (increased inhibition of seed germination, seedling growth, and stomatal aperture), lower transpiration rates upon dehydration, and enhanced drought tolerance, while the knockout mutants showed weak ABA hyposensitivity. AtCPL5 overexpression changed the expression of numerous genes, including those involved in ABA-mediated responses. In contrast to Ser-5-specific phosphatase activity of the negative stress response regulators, purified AtCPL5 and each CPD of the protein specifically dephosphorylated Ser-2 in RNAPII CTD. We conclude that AtCPL5 is a unique CPL family protein that positively regulates ABA-mediated development and drought responses in Arabidopsis.


Asunto(s)
Ácido Abscísico/farmacología , Proteínas de Arabidopsis/metabolismo , Arabidopsis/enzimología , Arabidopsis/fisiología , Sequías , Fosfoserina/metabolismo , Secuencia de Aminoácidos , Arabidopsis/efectos de los fármacos , Arabidopsis/genética , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/genética , Núcleo Celular/efectos de los fármacos , Núcleo Celular/metabolismo , Clonación Molecular , ADN Complementario/genética , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Técnicas de Inactivación de Genes , Genes de Plantas , Glucuronidasa/metabolismo , Datos de Secuencia Molecular , Filogenia , Estomas de Plantas/efectos de los fármacos , Plantas Modificadas Genéticamente , Estructura Terciaria de Proteína , ARN Polimerasa II/química , ARN Polimerasa II/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa , Estrés Fisiológico/efectos de los fármacos , Estrés Fisiológico/genética , Fracciones Subcelulares/efectos de los fármacos , Fracciones Subcelulares/metabolismo , Regulación hacia Arriba/efectos de los fármacos , Regulación hacia Arriba/genética
13.
Plant Physiol ; 153(1): 185-97, 2010 May.
Artículo en Inglés | MEDLINE | ID: mdl-20335401

RESUMEN

Drought poses a serious threat to the sustainability of rice (Oryza sativa) yields in rain-fed agriculture. Here, we report the results of a functional genomics approach that identified a rice NAC (an acronym for NAM [No Apical Meristem], ATAF1-2, and CUC2 [Cup-Shaped Cotyledon]) domain gene, OsNAC10, which improved performance of transgenic rice plants under field drought conditions. Of the 140 OsNAC genes predicted in rice, 18 were identified to be induced by stress conditions. Phylogenic analysis of the 18 OsNAC genes revealed the presence of three subgroups with distinct signature motifs. A group of OsNAC genes were prescreened for enhanced stress tolerance when overexpressed in rice. OsNAC10, one of the effective members selected from prescreening, is expressed predominantly in roots and panicles and induced by drought, high salinity, and abscisic acid. Overexpression of OsNAC10 in rice under the control of the constitutive promoter GOS2 and the root-specific promoter RCc3 increased the plant tolerance to drought, high salinity, and low temperature at the vegetative stage. More importantly, the RCc3:OsNAC10 plants showed significantly enhanced drought tolerance at the reproductive stage, increasing grain yield by 25% to 42% and by 5% to 14% over controls in the field under drought and normal conditions, respectively. Grain yield of GOS2:OsNAC10 plants in the field, in contrast, remained similar to that of controls under both normal and drought conditions. These differences in performance under field drought conditions reflect the differences in expression of OsNAC10-dependent target genes in roots as well as in leaves of the two transgenic plants, as revealed by microarray analyses. Root diameter of the RCc3:OsNAC10 plants was thicker by 1.25-fold than that of the GOS2:OsNAC10 and nontransgenic plants due to the enlarged stele, cortex, and epidermis. Overall, our results demonstrated that root-specific overexpression of OsNAC10 enlarges roots, enhancing drought tolerance of transgenic plants, which increases grain yield significantly under field drought conditions.


Asunto(s)
Sequías , Oryza/metabolismo , Proteínas de Plantas/metabolismo , Estrés Fisiológico , Factores de Transcripción/metabolismo , Secuencia de Aminoácidos , Biomasa , Perfilación de la Expresión Génica , Datos de Secuencia Molecular , Oryza/genética , Oryza/crecimiento & desarrollo , Proteínas de Plantas/genética , Raíces de Plantas/metabolismo , Factores de Transcripción/genética , Regulación hacia Arriba
14.
Plant Physiol ; 151(1): 16-33, 2009 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-19605550

RESUMEN

Microarray data can be used to derive understanding of the relationships between the genes involved in various biological systems of an organism, given the availability of databases of gene expression measurements from the complete spectrum of experimental conditions and materials. However, there have been no reports, to date, of such a database being constructed for rice (Oryza sativa). Here, we describe the construction of such a database, called RiceArrayNet (RAN; http://www.ggbio.com/arraynet/), which provides information on coexpression between genes in terms of correlation coefficients (r values). The average number of coexpressed genes is 214, with sd of 440 at r >or= 0.5. Given the correlation between genes in a gene pair, the degrees of closeness between genes can be visualized in a relational tree and a relational network. The distribution of correlated genes according to degree of stringency shows how each gene is related to other genes. As an application of RAN, the 16-member L7Ae ribosomal protein family was explored for coexpressed genes and gene expression values within and between rice and Arabidopsis (Arabidopsis thaliana), and common and unique features in coexpression partners and expression patterns were observed for these family members. We observed a correlation pattern between Os01g0968800, a drought-responsive element-binding transcription factor, Os02g0790500, a trehalose-6-phosphate synthase, and Os06g0219500, a small heat shock factor, reflecting the fact that genes responding to the same biological stresses are regulated together. The RAN database can be used as a tool to gain insight into a particular gene by examining its coexpression partners.


Asunto(s)
Bases de Datos Factuales , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/fisiología , Oryza/genética , Oryza/metabolismo , Arabidopsis/genética , Arabidopsis/metabolismo , Familia de Multigenes , Análisis de Secuencia por Matrices de Oligonucleótidos , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Agua/metabolismo
15.
FEMS Microbiol Lett ; 294(1): 119-25, 2009 May.
Artículo en Inglés | MEDLINE | ID: mdl-19493015

RESUMEN

Of the 316 actinomycetes strains isolated from various habitats, Streptomyces sp. strain JJ45 showed the strongest antibiotic activity against the plant pathogenic bacteria Xanthomonas campestris pv. campestris and was thus chosen for further study. The 16S rRNA gene sequence (1500 bp) and rpoB gene partial sequence (306 bp) of Streptomyces strains JJ45A and JJ45B were determined. The respective strain JJ45B sequences exhibited 96.8% identity with the Streptococcus gelaticus 16S rRNA gene sequence and 98.4% identity with the Streptococcus vinaceus ATCC 27478 rpoB partial sequence. The fermentation broth of the JJ45B strain was extracted to find an inhibitor of bacterial growth. The distilled water extract showed the highest activity against pathogenic bacteria. The active molecule was isolated by column chromatography on polyacrylamide or silica gel, thin-layer chromatography, and HPLC. It showed growth inhibition activity only toward phytopathogenic Xanthomonas sp. The structure of the compound was identified as alpha-l-sorbofuranose (3-->2)-beta-D-altrofuranose based on the interpretation of the nuclear magnetic resonance spectra.


Asunto(s)
Antibacterianos/farmacología , Disacáridos/farmacología , Streptomyces/química , Xanthomonas campestris/efectos de los fármacos , Antibacterianos/aislamiento & purificación , Proteínas Bacterianas/genética , Cromatografía en Gel , Cromatografía Líquida de Alta Presión , Cromatografía en Capa Delgada , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , ARN Polimerasas Dirigidas por ADN/genética , Disacáridos/química , Disacáridos/aislamiento & purificación , Datos de Secuencia Molecular , Estructura Molecular , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Streptomyces/clasificación , Streptomyces/genética
16.
J Bacteriol ; 191(11): 3758-9, 2009 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-19329631

RESUMEN

Burkholderia glumae is the causative agent of grain and seedling rot in rice and of bacterial wilt in many field crops. Here, we report the complete genome sequence of B. glumae BGR1 isolated from a diseased rice panicle in Korea.


Asunto(s)
Burkholderia/genética , Genoma Bacteriano/genética , Cromosomas Bacterianos/genética , Datos de Secuencia Molecular , Plásmidos/genética
17.
Mol Cells ; 27(1): 75-81, 2009 Jan 31.
Artículo en Inglés | MEDLINE | ID: mdl-19214436

RESUMEN

The Arabidopsis gene AtLEC (At3g15356) gene encodes a putative 30-kDa protein with a legume lectin-like domain. Likely to classic legume lectin family of genes, AtLEC is expressed in rosette leaves, primary inflorescences, and roots, as observed in Northern blot analysis. The accumulation of AtLEC transcript is induced very rapidly, within 30 min, by chitin, a fungal wall-derived oligosaccharide elictor of the plant defense response. Transgenic Arabidopsis carrying an AtLEC promoter-driven beta-glucuronidase (GUS) construct exhibited GUS activity in the leaf veins, secondary inflorescences, carpel heads, and silique receptacles, in which no expression could be seen in Northern blot analysis. This observation suggests that AtLEC expression is induced transiently and locally during developmental processes in the absence of an external signal such as chitin. In addition, mechanically wounded sites showed strong GUS activity, indicating that the AtLEC promoter responds to jasmonate. Indeed, methyl jasmonate and ethylene exposure induced AtLEC expression within 3-6 h. Thus, the gene appears to play a role in the jasmonate-/ethylene-responsive, in addition to the chitin-elicited, defense responses. However, chitin-induced AtLEC expression was also observed in jasmonate-insensitive (coi1) and ethylene-insensitive (etr1-1) Arabidopsis mutants. Thus, it appears that chitin promotes AtLEC expression via a jasmonate- and/or ethylene-independent pathway.


Asunto(s)
Proteínas de Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Arabidopsis/genética , Quitina/farmacología , Reguladores del Crecimiento de las Plantas/farmacología , Lectinas de Plantas/genética , Regulación hacia Arriba/efectos de los fármacos , Acetatos/farmacología , Secuencia de Aminoácidos , Arabidopsis/efectos de los fármacos , Proteínas de Arabidopsis/química , Northern Blotting , Ciclopentanos/farmacología , Etilenos/farmacología , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Genes de Plantas , Glucuronidasa/metabolismo , Datos de Secuencia Molecular , Especificidad de Órganos/efectos de los fármacos , Oxilipinas/farmacología , Lectinas de Plantas/química , Transducción de Señal/efectos de los fármacos
18.
Proteomics ; 8(1): 106-21, 2008 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-18050277

RESUMEN

Plant pathogenic bacteria transfer effector proteins into plant cells via the hypersensitive response and pathogenicity (Hrp) type III protein secretion system (T3SS) during infection. The genes encoding the Hrp T3SS are expressed only under plant apoplast-mimicking conditions in an AraC-type transcriptional activator HrpB-dependent manner. To identify the proteins controlled by HrpB in Burkholderia glumae in vitro, we constitutively expressed hrpB and analyzed the proteins showing altered expression using 2-DE and ESI-MS/MS. Among 46 proteins exhibiting consistently altered expression, which were encoded by 34 different genes, 34 were secretory proteins and 12 were cytoplasmic. Twenty-eight of the secreted proteins showed increased accumulation, whereas the other six showed decreased accumulation. None of the HrpB-dependent proteins had significant homology to known T3SS-dependent proteins, except for HrpK from Pseudomonas syringae pv. syringae and two T3SS-associated cytoplasmic proteins from Ralstonia solanacearum. Twenty-one of the 34 genes had putative HrpB-binding sequences in their upstream regulatory regions. Secretion of all 34 extracellular proteins was independent of the Hrp T3SS, and 16 were secreted via a type II protein secretion system (T2SS). Mutants lacking the T2SS or Hrp T3SS produced toxoflavin but were less virulent to rice panicles, indicating the importance of these proteins in pathogenicity.


Asunto(s)
Proteínas Bacterianas/genética , Burkholderia/genética , Regulación Bacteriana de la Expresión Génica/fisiología , Enfermedades de las Plantas/microbiología , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Proteínas Bacterianas/biosíntesis , Burkholderia/patogenicidad , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/fisiología , Electroforesis en Gel Bidimensional , Datos de Secuencia Molecular , Oryza/microbiología , Proteómica , Transactivadores/biosíntesis , Transactivadores/genética , Virulencia
19.
Mol Cells ; 24(2): 301-6, 2007 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-17978586

RESUMEN

Tocopherols, essential components of the human diet, are synthesized exclusively by photosynthetic organisms. To increase tocopherol content by increasing total flux to the tocopherol biosynthetic pathway, genes encoding Arabidopsis homogentisate phytyltransferase (HPT/V-TE2) and tocopherol cyclase (TC/VTE1) were constitutively overexpressed in lettuce (Lactuca sativa L.). Total tocopherol content of the transgenic plants overexpressing either of the genes was increased by more than 2-fold mainly due to an increase in gamma-tocopherol. However, chlorophyll content in the HPT/VTE2 and TC/VTE1 transgenic lines decreased by up to 20% and increased by up to 35%, respectively (P < 0.01). These results demonstrate that manipulation of the tocopherol biosynthetic pathway can increase or decrease chlorophyll content depending on the gene introduced.


Asunto(s)
Transferasas Alquil y Aril/metabolismo , Proteínas de Arabidopsis/metabolismo , Arabidopsis/enzimología , Transferasas Intramoleculares/metabolismo , Lactuca/genética , Lactuca/metabolismo , Tocoferoles/metabolismo , gamma-Tocoferol/metabolismo , Transferasas Alquil y Aril/genética , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Clorofila/metabolismo , ADN de Plantas , Alimentos Modificados Genéticamente , Expresión Génica , Genoma de Planta , Transferasas Intramoleculares/genética , Plantas Modificadas Genéticamente , Rhizobium , Transformación Genética , Transgenes , gamma-Tocoferol/química
20.
Mol Microbiol ; 64(1): 165-79, 2007 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-17376080

RESUMEN

The bacterium Burkholderia glumae causes rice grain rot by producing toxoflavin, whose expression is regulated by quorum sensing (QS). We report a major deviation from the current paradigm for the regulation of bacterial polar flagellum genes. The N-octanoyl homoserine lactone (C8-HSL)-deficient mutant of B. glumae is aflagellate and has lost the ability to swim and swarm at 37 degrees C. Mutagenesis of the bacterium with the mini-Tn5rescue identified an IclR-type transcriptional regulator, called QsmR, which is important for flagellum formation. TofR, which is a cognate C8-HSL receptor, activated qsmR expression by binding directly to the qsmR promoter region. From the flagellum gene cluster, we identified flhDC homologues that are directly activated by QsmR. FlhDC in turn activates the expression of genes involved in flagellum biosynthesis, motor functions and chemotaxis in B. glumae. Non-motile qsmR, fliA and flhDC mutants produced toxoflavin, but lost pathogenicity for rice. The unexpected discovery of FlhDC in a polarly flagellate bacterium suggests that exceptions to the typical regulatory mechanisms of flagellum genes exist in Gram-negative bacteria. The finding that functional flagella play critical roles in the pathogenicity of B. glumae suggests that either QS or flagellum formation constitutes a good target for the control of rice grain rot.


Asunto(s)
Proteínas Bacterianas/metabolismo , Burkholderia/crecimiento & desarrollo , Burkholderia/patogenicidad , Flagelos/metabolismo , Regulación Bacteriana de la Expresión Génica , Oryza/microbiología , Percepción de Quorum , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Secuencia de Bases , Burkholderia/metabolismo , Burkholderia/fisiología , Quimiotaxis , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/metabolismo , Flagelos/genética , Datos de Secuencia Molecular , Familia de Multigenes , Mutación , Enfermedades de las Plantas/microbiología , Transactivadores/genética , Transactivadores/metabolismo
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