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1.
Carbohydr Res ; 488: 107909, 2020 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-31968294

RESUMEN

Under optimized conditions, the lactic acid bacterium Lactobacillus fermentum Lf2 secretes up to 2 gL-1 of a mixture of polysaccharides into the fermentation medium when grown on sucrose. Earlier studies had shown that the mixture is biologically active and work was undertaken to characterise the polysaccharides. Preparative size exclusion chromatography was used to separate a high molecular mass ß-glucan (weight average mass of 1.23 × 106 gmol-1) from two medium molecular mass polysaccharides (weight average mass of 8.8 × 104 gmol-1). Under optimized growth conditions, the medium molecular mass polysaccharides accounted for more than 75% of the mixture by weight. Monomer, linkage analysis and NMR spectroscopy of the medium molecular mass polysaccharides, and material isolated after their Smith degradation, was used to identify the structure of the component polysaccharides. The mixture contains two novel polysaccharides. The first has a main chain of ß-1,6-linked galactofuranoses which is non-stoichiometrically 2-O-glucosylated. The degree of substitution at the 2-position, with α-D-Glcp, depends on the fermentation conditions; under optimized conditions greater than 80% 2-O-α-D-glucosylation was observed. The second polysaccharide is a heteroglycan with four monosaccharides in the repeat unit: residual signals in the NMR suggest that the sample also contains trace amounts (<3%) of cell wall polysaccharides.


Asunto(s)
Limosilactobacillus fermentum/crecimiento & desarrollo , Polisacáridos Bacterianos/química , beta-Glucanos/química , Secuencia de Carbohidratos , Fermentación , Limosilactobacillus fermentum/química , Peso Molecular
2.
Viruses ; 12(1)2020 01 20.
Artículo en Inglés | MEDLINE | ID: mdl-31968684

RESUMEN

Papillomaviruses infect the skin and mucosal surfaces of diverse animal hosts with consequences ranging from asymptomatic colonization to highly malignant epithelial cancers. Increasing evidence suggests a role for papillomaviruses in the most common cutaneous malignancy of domestic cats, squamous cell carcinoma (SCC). Using total DNA sequencing we identified a novel feline papillomavirus in a nasal biopsy taken from a cat presenting with both nasal cavity lymphoma and recurrent squamous cell carcinoma affecting the nasal planum. We designate this novel virus as Felis catus papillomavirus 6 (FcaPV6). The complete FcaPV6 7453 bp genome was similar to those of other feline papillomaviruses and phylogenetic analysis revealed that it was most closely related to FcaPV3, although was distinct enough to represent a new viral type. Classification of FcaPV6 in a new genus alongside FcaPVs 3, 4 and 5 is supported. Archived excisional biopsy of the SCC, taken 20 months prior to presentation, was intensely positive on p16 immunostaining. FcaPV6, amplified using virus-specific, but not consensus, PCR, was the only papillomavirus detected in DNA extracted from the SCC. Conversely, renal lymphoma, sampled at necropsy two months after presentation, tested negative on FcaPV6-specific PCR. In sum, using metagenomics we demonstrate the presence of a novel feline papillomavirus in association with cutaneous squamous cell carcinoma.


Asunto(s)
Carcinoma de Células Escamosas/veterinaria , Carcinoma de Células Escamosas/virología , Recurrencia Local de Neoplasia/veterinaria , Papillomaviridae/genética , Infecciones por Papillomavirus/veterinaria , Neoplasias Cutáneas/veterinaria , Animales , Enfermedades de los Gatos/diagnóstico , Enfermedades de los Gatos/virología , Gatos , ADN Viral/genética , Genoma Viral , Masculino , Recurrencia Local de Neoplasia/virología , Papillomaviridae/aislamiento & purificación , Papillomaviridae/patogenicidad , Infecciones por Papillomavirus/diagnóstico , Filogenia , Análisis de Secuencia de ADN , Piel/patología , Piel/virología , Neoplasias Cutáneas/virología
3.
Carbohydr Res ; 484: 107781, 2019 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-31476560

RESUMEN

A novel strain of Lactobacillus mucosae was isolated from a faecal sample of an individual who had adhered to a strict vegetarian diet for nine years. The strain displayed a ropy character when grown on plates and generated a relatively small amount (62 mg/L) of an exopolysaccharide (EPS) when grown in broth culture. The EPS eluted from a size exclusion chromatography column as a single band with a weight average molecular mass of 1.51 × 104 g/mol. Monomer analysis and sugar absolute configuration analysis confirmed that the EPS was a D-galactan. Using linkage analysis in combination with 1D and 2D-NMR spectroscopy, with spectra being recorded for both the native EPS and for the products generated by Smith degradation of the EPS, the following structure was determined for the repeat unit of the polysaccharide: This is a novel D-galactan and represents the first structure for an EPS produced by a strain of Lactobacillus mucosae to be reported.


Asunto(s)
Heces/microbiología , Galactanos/química , Lactobacillus/aislamiento & purificación , Secuencia de Carbohidratos , Galactanos/aislamiento & purificación , Humanos , Lactobacillus/genética , Lactobacillus/metabolismo , Espectroscopía de Resonancia Magnética , Peso Molecular , Polisacáridos Bacterianos/química , Polisacáridos Bacterianos/aislamiento & purificación
4.
Value Health ; 22(10): 1178-1186, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31563261

RESUMEN

BACKGROUND: Network meta-analysis (NMA) techniques allow the comparison of a complete set of interventions for patient groups. These meta-analysis techniques may be the only source of evidence to underpin estimates of comparative efficacy. Reimbursement agencies around the world are increasingly reliant upon meta-analysis techniques and assess their design and conduct with growing sophistication. OBJECTIVE: Our objective is to create a superset of requirements collated from available national guidelines for the conduct of network meta-analysis such that a single analysis may be conducted to satisfy all reimbursement bodies that have specified requirements in sufficient detail. METHODS: Published and draft guidelines documents from reimbursement bodies and health technology appraisal agencies were examined for their stipulations as to the conduct and design of network meta-analysis and measures to be taken to reduce bias and increase validity. RESULTS: Guidelines from 41 countries were reviewed, yielding a sample size of 13 countries' guideline documents: Australia, Belgium, Canada, China, Ireland, England and Wales, France, Germany, Scotland, South Africa, South Korea, Spain, Thailand, and a guideline document from the European Network of Health Technology Assessment, which contained explicit recommendations or requirements for conduct of NMA. CONCLUSION: This study expands the range of previous work that reviewed the guidelines for the use of indirect evidence from multiple national jurisdictions. These aggregate guidelines do not include requirements that are mutually prohibitive. It is possible to perform a single NMA for submission to an expanded list of national jurisdictions.


Asunto(s)
Guías como Asunto , Metaanálisis como Asunto , Internacionalidad
5.
Carbohydr Res ; 476: 44-52, 2019 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-30897368

RESUMEN

When grown in a semi-defined medium, L. fermentum Lf2 synthesizes significant quantities (∼2 g/L) of two exopolysaccharides (EPS). The two EPS were separated by preparative size exclusion chromatography to give a high molecular mass ß-glucan (1.23 × 106 Da) and a medium molecular mass heteroglycan (8.8 × 104 Da). The structure of the high molecular mass ß-glucan was determined using a combination of NMR spectroscopy, monomer and linkage analysis. The EPS has the following structure: The immunomodulatory activity of the high molecular mass EPS was studied in peripheral blood mononuclear cells (PBMC). Exposure of PBMC to an aqueous solution of the EPS for 24 h led to increased cell proliferation, changes in expression of the cytokines CD14 and TLR2, and to an increase in production of TNF-α compared to controls. In contrast, when cells that had been treated with EPS for 24 h and from which the EPS had been removed, were subsequently exposed to the bacterial antigen LPS very low levels of TNF-α production were observed. This result indicates that the EPS imparts immunotolerance in PBMC. An ability to modulate the release of the proinflammatory mediators, such as TNF-α, is an important goal in the development of therapies for the treatment of diseases, such as Crohn's disease and ulcerative colitis, associated with excessive release of inflammatory mediators.


Asunto(s)
Factores Inmunológicos/química , Factores Inmunológicos/farmacología , Limosilactobacillus fermentum/química , beta-Glucanos/química , beta-Glucanos/farmacología , Humanos , Factores Inmunológicos/aislamiento & purificación , Leucocitos Mononucleares/efectos de los fármacos , Leucocitos Mononucleares/inmunología , Leucocitos Mononucleares/metabolismo , Receptores de Lipopolisacáridos/metabolismo , Receptor Toll-Like 2/metabolismo , Factor de Necrosis Tumoral alfa/metabolismo , beta-Glucanos/aislamiento & purificación
6.
J Genomics ; 7: 1-6, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30662569

RESUMEN

Alkaline environments represent a significant challenge to the growth of micro-organisms. Despite this, there are a number of alkaline environments which contain active microbial communities. Here we describe the genome of a diazotrophic, alkalitolerant strain of Azonexus, which was isolated from a microcosm seeded with hyperalkaline soils resulting from lime depositions. The isolate has a genome size 3.60 Mb with 3431 protein coding genes. The proteome indicated the presence of genes associated with the cycling of nitrogen, in particular the fixation of atmospheric nitrogen. Although closely related to Azonexus hydrophilus strain d8-1 by both 16S (97.9%) and in silico gDNA (84.1%) relatedness, the isolate demonstrates a pH tolerance above that reported for this strain. The proteome contained genes for the complete Na+/H+ antiporter (subunits A to G) for cytoplasmic pH regulation; this may account for the phenotypic characteristics of this strain which exhibited optimal growth conditions of pH 9 and 30°C.

7.
Carbohydr Res ; 455: 97-105, 2018 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-29195134

RESUMEN

Alpha and beta-glucoisosaccharinic acids ((2S,4S)-2,4,5-trihydroxy-2-(hydroxymethyl)pentanoic acid and (2R,4S)-2,4,5-trihydroxy-2-(hydroxymethyl)pentanoic acid) which are produced when cellulosic materials are treated with aqueous alkali are potentially valuable platform chemicals. Their highly functionalised carbon skeleton, with fixed chirality at C-2 and C-4, makes them ideal starting materials for use in synthesis. In order to assess the potential of these saccharinic acids as platform chemicals we have explored the protecting group chemistry of the lactone form of alpha-glucoisosaccharinic acid (α-GISAL). We report here the use of single and multiple step reaction pathways leading to the regioselective protection of the three different hydroxyl groups of α-GISAL. We report strategies for protecting the three different hydroxyl groups individually or in pairs. We also report the synthesis of a range of tri-O-protected α-GISAL derivatives where a number of the products contain orthogonal protecting groups.


Asunto(s)
Ácido Carbónico/química , Azúcares Ácidos/química , Estereoisomerismo
8.
Appl Environ Microbiol ; 83(3)2017 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-27913418

RESUMEN

Lactobacillus paracasei DG is a bacterial strain with recognized probiotic properties and is used in commercial probiotic products. However, the mechanisms underlying its probiotic properties are mainly unknown. In this study, we tested the hypothesis that the ability of strain DG to interact with the host is at least partly associated with its ability to synthesize a surface-associated exopolysaccharide (EPS). Comparative genomics revealed the presence of putative EPS gene clusters in the DG genome; accordingly, EPS was isolated from the surface of the bacterium. A sample of the pure EPS from strain DG (DG-EPS), upon nuclear magnetic resonance (NMR) and chemical analyses, was shown to be a novel branched hetero-EPS with a repeat unit composed of l-rhamnose, d-galactose, and N-acetyl-d-galactosamine in a ratio of 4:1:1. Subsequently, we demonstrated that DG-EPS displays immunostimulating properties by enhancing the gene expression of the proinflammatory cytokines tumor necrosis factor alpha (TNF-α) and interleukin 6 (IL-6), and particularly that of the chemokines IL-8 and CCL20, in the human monocytic cell line THP-1. In contrast, the expression of the cyclooxygenase enzyme COX-2 was not affected. In conclusion, DG-EPS is a bacterial macromolecule with the ability to boost the immune system either as a secreted molecule released from the bacterium or as a capsular envelope on the bacterial cell wall. This study provides additional information about the mechanisms supporting the cross talk between L. paracasei DG and the host. IMPORTANCE: The consumption of food products and supplements called probiotics (i.e., containing live microbial cells) to potentially prevent or treat specific diseases is constantly gaining popularity. The lack of knowledge on the precise mechanisms supporting their potential health-promoting properties, however, greatly limits a more appropriate use of each single probiotic strain. In this context, we studied a well-known probiotic, Lactobacillus paracasei DG, in order to identify the constitutive molecules that can explain the documented health-promoting properties of this bacterium. We found a novel polysaccharide molecule, named DG-EPS, that is secreted by and covers the bacterium. We demonstrated that this molecule, which has a chemical structure never identified before, has immunostimulatory properties and therefore may contribute to the ability of the probiotic L. paracasei DG to interact with the immune system.


Asunto(s)
Expresión Génica , Lacticaseibacillus paracasei/fisiología , Polisacáridos Bacterianos/fisiología , Línea Celular , Humanos , Monocitos/microbiología , Ramnosa/química
9.
PLoS One ; 11(11): e0165832, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27806095

RESUMEN

Diasteriomeric isosaccharinic acid (ISA) is an important consideration within safety assessments for the disposal of the United Kingdoms' nuclear waste legacy, where it may potentially influence radionuclide migration. Since the intrusion of micro-organisms may occur within a disposal concept, the impact of ISA may be impacted by microbial metabolism. Within the present study we have established two polymicrobial consortia derived from a hyperalkaline soil. Here, α-ISA and a diatereomeric mix of ISAs' were used as a sole carbon source, reflecting two common substrates appearing within the literature. The metabolism of ISA within these two consortia was similar, where ISA degradation resulted in the acetogenesis and hydrogenotrophic methanogenesis. The chemical data obtained confirm that the diastereomeric nature of ISA is likely to have no impact on its metabolism within alkaline environments. High throughput sequencing of the original soil showed a diverse community which, in the presence of ISA allowed for the dominance the Clostridiales associated taxa with Clostridium clariflavum prevalent. Further taxonomic investigation at the genus level showed that there was in fact a significant difference (p = 0.004) between the two community profiles. Our study demonstrates that the selection of carbon substrate is likely to have a significant impact on microbial community composition estimations, which may have implications with respect to a safety assessment of an ILW-GDF.


Asunto(s)
Bacterias/clasificación , Calcio/metabolismo , Azúcares Ácidos/metabolismo , Administración de Residuos/métodos , Bacterias/genética , Bacterias/patogenicidad , Calcio/química , ADN Bacteriano/análisis , Secuenciación de Nucleótidos de Alto Rendimiento , Consorcios Microbianos , Residuos Radiactivos , Análisis de Secuencia de ADN , Microbiología del Suelo , Estereoisomerismo , Azúcares Ácidos/química , Reino Unido
10.
Org Biomol Chem ; 14(46): 10840-10847, 2016 Nov 22.
Artículo en Inglés | MEDLINE | ID: mdl-27805225

RESUMEN

In the pharmaceutical industry the sulfurisation of nucleotide-phosphites to produce more biologically stable thiophosphates is often achieved using 'aged' solutions of phenylacetyl disulfide (PADS) which consist of a mixture of polysulfides that are more efficient sulfur transfer reagents. However, both 'fresh' and 'aged' solutions of PADS are capable of the sulfurisation of phosphites. The rates of both processes in acetonitrile are first order in sulfurising agent, phosphite and a pyridine base, although with 'aged' PADS the rate becomes independent of base at high concentrations. The Brönsted ß values for sulfurisation using 'fresh' and 'aged' PADS with substituted pyridines are 0.43 and 0.26, respectively. With 'fresh' PADS the Brönsted ßnuc = 0.51 for substituted trialkyl phosphites is consistent with a mechanism involving nucleophilic attack of the phosphite on the PADS disulfide bond to reversibly generate a phosphonium intermediate, the rate-limiting breakdown of which occurs by a base catalysed elimination process, confirmed by replacing the ionisable hydrogens in PADS with methyl groups. The comparable polysulfide phosphonium ion intermediate seen with 'aged' PADS presents a more facile pathway for product formation involving S-S bond fission as opposed to C-S bond fission.


Asunto(s)
Oligonucleótidos Antisentido/química , Fenilacetatos/química , Fosfitos/química , Oligonucleótidos Fosforotioatos/química , Sulfuros/química , Cinética
11.
Org Biomol Chem ; 14(35): 8301-8, 2016 Sep 21.
Artículo en Inglés | MEDLINE | ID: mdl-27531007

RESUMEN

The synthesis of phosphorothioate oligonucleotides is often accomplished in the pharmaceutical industry by the sulfurisation of the nucleotide-phosphite using phenylacetyl disulfide (PADS) which has an optimal combination of properties. This is best achieved by an initial 'ageing' of PADS for 48 h in acetonitrile with 3-picoline to generate polysulfides. The initial base-catalysed degradation of PADS occurs by an E1cB-type elimination to generate a ketene and acyldisulfide anion. Proton abstraction to reversibly generate a carbanion is demonstrated by H/D exchange, the rate of which is greatly increased by electron-withdrawing substituents in the aromatic ring of PADS. The ketene can be trapped intramolecularly by an o-allyl group. The disulfide anion generated subsequently attacks unreacted PADS on sulfur to give polysulfides, the active sulfurising agent. The rate of degradation of PADS is decreased by less basic substituted pyridines and is only first order in PADS indicating that the rate-limiting step is formation of the disulfide anion from the carbanion.


Asunto(s)
Disulfuros/química , Oligonucleótidos Antisentido/química , Fenilacetatos/química , Fosfatos/química , Sulfuros/química , Azufre/química , Tionucleótidos/síntesis química , Aniones/química , Catálisis , Cinética , Espectroscopía de Resonancia Magnética/métodos , Espectrometría de Masas/métodos , Oligonucleótidos Fosforotioatos/química , Protones
12.
Carbohydr Res ; 427: 48-54, 2016 Jun 02.
Artículo en Inglés | MEDLINE | ID: mdl-27107221

RESUMEN

The stoichiometry of the metal complexes formed between nickel and the ligand ß-glucoisosaccharinic acid (ß-GISA) and a racemic mixture of enantiomers of xyloisosaccharinic acid (XISA) has been determined at both neutral and alkaline pHs. Bjerrum plots, Job's plots and conductance measurements indicated that for each of the systems one to one Ni(ligand) complexes were formed at near neutral pHs (<7.5). At intermediate alkaline pHs (7.5-13) there is evidence to support the formation and precipitation of Ni2(ligand)(OH)3 complexes, finally, at high pH (>13) sparingly soluble Ni2(ligand)(OH)4 complexes were formed. The stability constants for the Ni(ß-GISA), Ni(α-GISA) and Ni(XISA) complexes formed at neutral pH were determined under identical conditions using polarographic studies. The measured stability constants for Ni(ß-GISA) (log10 ß = 1.94 ± 0.15) and for Ni(α-GISA)(log10 ß = 2.07 ± 0.13) are very similar; the value measured for the Ni(XISA) complex (log10 ß = 0.83) was an order of magnitude smaller. The stability constants for the Ni2(Ligand)(OH)4 complexes formed at highly alkaline pHs were determined using the Schubert method. The measured stability constant for Ni2(ß-GISA)(OH)4 (log10 ß = 30.6 ± 0.5) was an order of magnitude bigger than the value for Ni2(α-GISA)(OH)4 (log10 ß = 29.0 ± 0.5) measured under identical conditions. Attempts to measure the stability constant for Ni2(XISA)(OH)4 were unsuccessful; Ni2(XISA)(OH)4 complexes were not present in significant amounts at high pH to allow the log10ß value to be determined by the Schubert method.


Asunto(s)
Níquel/química , Azúcares Ácidos/química , Complejos de Coordinación/química , Glucosa/química , Concentración de Iones de Hidrógeno , Estereoisomerismo , Xilosa/química
13.
Carbohydr Res ; 421: 46-54, 2016 Feb 08.
Artículo en Inglés | MEDLINE | ID: mdl-26774878

RESUMEN

NMR and anion exchange chromatography analysis of the waste streams generated during the commercial production of sophorolipids by the yeast Candida bombicola identified the presence of small but significant quantities (1% w/v) of free sophorose. Sophorose, a valuable disaccharide, was isolated from the aqueous wastes using a simple extraction procedure and was purified by chromatography on a carbon celite column providing easy access to large quantities of the disaccharide. Experiments were undertaken to identify the origin of sophorose and it is likely that acetylated sophorose derivatives were produced by an enzyme catalysed hydrolysis of the glucosyl-lipid bond of sophorolipids; the acetylated sophorose derivatives then undergo hydrolysis to release the parent disaccharide. Treatment of sophorose with aqueous alkali at elevated temperatures (0.1M NaOH at 50 °C) resulted in C2-epimerisation of the terminal reducing sugar and its conversion to the corresponding 2-O-ß-D-glucopyranosyl-D-mannose which was isolated and characterised. In aqueous alkaline solution ß-(1,2)-linked glycosidic bonds do not undergo either hydrolysis or peeling reactions.


Asunto(s)
Glucanos/aislamiento & purificación , Lípidos/biosíntesis , Manosa/aislamiento & purificación , Aguas Residuales/química , Acetilación , Cromatografía por Intercambio Iónico , Concentración de Iones de Hidrógeno , Hidrólisis , Lípidos/química , Espectroscopía de Resonancia Magnética , Manosa/química , Estructura Molecular
14.
Infect Immun ; 83(12): 4884-95, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26438798

RESUMEN

Campylobacter jejuni is a commensal bacterium in the intestines of animals and birds and a major cause of food-borne gastroenteritis in humans worldwide. Here we show that exposure to pancreatic amylase leads to secretion of an α-dextran by C. jejuni and that a secreted protease, Cj0511, is required. Exposure of C. jejuni to pancreatic amylase promotes biofilm formation in vitro, increases interaction with human epithelial cell lines, increases virulence in the Galleria mellonella infection model, and promotes colonization of the chicken ileum. We also show that exposure to pancreatic amylase protects C. jejuni from stress conditions in vitro, suggesting that the induced α-dextran may be important during transmission between hosts. This is the first evidence that pancreatic amylase functions as an interkingdom signal in an enteric microorganism.


Asunto(s)
Proteínas Bacterianas/genética , Biopelículas/efectos de los fármacos , Infecciones por Campylobacter/veterinaria , Campylobacter jejuni/efectos de los fármacos , alfa-Amilasas Pancreáticas/farmacología , Péptido Hidrolasas/genética , Enfermedades de las Aves de Corral/microbiología , Animales , Proteínas Bacterianas/metabolismo , Biopelículas/crecimiento & desarrollo , Células CACO-2 , Infecciones por Campylobacter/enzimología , Infecciones por Campylobacter/microbiología , Infecciones por Campylobacter/patología , Campylobacter jejuni/patogenicidad , Campylobacter jejuni/fisiología , Línea Celular Tumoral , Pollos , Dextranos/biosíntesis , Dextranos/metabolismo , Células Epiteliales , Regulación de la Expresión Génica , Interacciones Huésped-Patógeno , Humanos , Intestinos/microbiología , Intestinos/patología , Mariposas Nocturnas/microbiología , alfa-Amilasas Pancreáticas/aislamiento & purificación , Péptido Hidrolasas/metabolismo , Enfermedades de las Aves de Corral/enzimología , Enfermedades de las Aves de Corral/patología , Transducción de Señal , Porcinos
15.
PLoS One ; 10(9): e0137682, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26367005

RESUMEN

One design concept for the long-term management of the UK's intermediate level radioactive wastes (ILW) is disposal to a cementitious geological disposal facility (GDF). Under the alkaline (10.013.0) anoxic conditions expected within a GDF, cellulosic wastes will undergo chemical hydrolysis. The resulting cellulose degradation products (CDP) are dominated by α- and ß-isosaccharinic acids (ISA), which present an organic carbon source that may enable subsequent microbial colonisation of a GDF. Microcosms established from neutral, near-surface sediments demonstrated complete ISA degradation under methanogenic conditions up to pH 10.0. Degradation decreased as pH increased, with ß-ISA fermentation more heavily influenced than α-ISA. This reduction in degradation rate was accompanied by a shift in microbial population away from organisms related to Clostridium sporosphaeroides to a more diverse Clostridial community. The increase in pH to 10.0 saw an increase in detection of Alcaligenes aquatilis and a dominance of hydrogenotrophic methanogens within the Archaeal population. Methane was generated up to pH 10.0 with acetate accumulation at higher pH values reflecting a reduced detection of acetoclastic methanogens. An increase in pH to 11.0 resulted in the accumulation of ISA, the absence of methanogenesis and the loss of biomass from the system. This study is the first to demonstrate methanogenesis from ISA by near surface microbial communities not previously exposed to these compounds up to and including pH 10.0.


Asunto(s)
Residuos Radiactivos , Azúcares Ácidos/metabolismo , Administración de Residuos/métodos , Archaea/genética , Archaea/metabolismo , Biodegradación Ambiental , Clostridium/genética , Clostridium/metabolismo , Biblioteca de Genes , Concentración de Iones de Hidrógeno , Metano/metabolismo , Filogenia , ARN Bacteriano/química , Análisis de Secuencia de ARN
16.
PLoS One ; 10(3): e0119164, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25748643

RESUMEN

The contamination of surface environments with hydroxide rich wastes leads to the formation of high pH (>11.0) soil profiles. One such site is a legacy lime works at Harpur Hill, Derbyshire where soil profile indicated in-situ pH values up to pH 12. Soil and porewater profiles around the site indicated clear evidence of the presence of the α and ß stereoisomers of isosaccharinic acid (ISA) resulting from the anoxic, alkaline degradation of cellulosic material. ISAs are of particular interest with regards to the disposal of cellulosic materials contained within the intermediate level waste (ILW) inventory of the United Kingdom, where they may influence radionuclide mobility via complexation events occurring within a geological disposal facility (GDF) concept. The mixing of uncontaminated soils with the alkaline leachate of the site resulted in ISA generation, where the rate of generation in-situ is likely to be dependent upon the prevailing temperature of the soil. Microbial consortia present in the uncontaminated soil were capable of surviving conditions imposed by the alkaline leachate and demonstrated the ability to utilise ISAs as a carbon source. Leachate-contaminated soil was sub-cultured in a cellulose degradation product driven microcosm operating at pH 11, the consortia present were capable of the degradation of ISAs and the generation of methane from the resultant H2/CO2 produced from fermentation processes. Following microbial community analysis, fermentation processes appear to be predominated by Clostridia from the genus Alkaliphilus sp, with methanogenesis being attributed to Methanobacterium and Methanomassiliicoccus sp. The study is the first to identify the generation of ISA within an anthropogenic environment and advocates the notion that microbial activity within an ILW-GDF is likely to influence the impact of ISAs upon radionuclide migration.


Asunto(s)
Consorcios Microbianos , Residuos Radiactivos , Microbiología del Suelo , Suelo , Azúcares Ácidos/metabolismo , Instalaciones de Eliminación de Residuos , Concentración de Iones de Hidrógeno
17.
PLoS One ; 9(9): e107433, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25268118

RESUMEN

The anoxic, alkaline hydrolysis of cellulosic materials generates a range of cellulose degradation products (CDP) including α and ß forms of isosaccharinic acid (ISA) and is expected to occur in radioactive waste disposal sites receiving intermediate level radioactive wastes. The generation of ISA's is of particular relevance to the disposal of these wastes since they are able to form complexes with radioelements such as Pu enhancing their migration. This study demonstrates that microbial communities present in near-surface anoxic sediments are able to degrade CDP including both forms of ISA via iron reduction, sulphate reduction and methanogenesis, without any prior exposure to these substrates. No significant difference (n = 6, p = 0.118) in α and ß ISA degradation rates were seen under either iron reducing, sulphate reducing or methanogenic conditions, giving an overall mean degradation rate of 4.7 × 10(-2) hr(-1) (SE ± 2.9 × 10(-3)). These results suggest that a radioactive waste disposal site is likely to be colonised by organisms able to degrade CDP and associated ISA's during the construction and operational phase of the facility.


Asunto(s)
Celulosa/química , Sedimentos Geológicos/química , Residuos Radiactivos , Azúcares Ácidos/química , Bacterias/genética , Bacterias/metabolismo , Biodegradación Ambiental , Compuestos Férricos/química , Sedimentos Geológicos/microbiología , Concentración de Iones de Hidrógeno , Tipificación Molecular , ARN Ribosómico 16S/genética
18.
Value Health ; 17(5): 642-54, 2014 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25128059

RESUMEN

OBJECTIVES: Within technology appraisals, it is necessary to compare the complete set of treatments that may be used in the patient group under consideration. Randomized controlled trials are a key source of evidence for these comparisons. The techniques of network meta-analysis allow the networks of trial evidence to be evaluated to obtain estimates of comparative efficacy between sets of treatments. These techniques may be the only source of estimates of comparative effectiveness if trials directly comparing the treatments of interest have not been conducted, and may provide useful additional evidence if both direct and indirect comparisons exist. METHODS: We examined both published and draft guidelines from reimbursement and health technology appraisal bodies, and considered their recommendations using appropriate methodology for the conduct of indirect comparisons and the assessments of their validity. RESULTS: Guidelines from 33 countries were reviewed. Of these, guidelines from 9 countries-Australia, Belgium, Canada, France, Germany, Scotland, Spain, South Africa, and the United Kingdom (England and Wales)-included detailed recommendations on the conduct of network meta-analysis. The recommendations were summarized. CONCLUSIONS: No two recommendations from the multiple national guidelines are mutually exclusive. It is possible to perform one network meta-analysis for submission to multiple national jurisdictions.


Asunto(s)
Investigación sobre la Eficacia Comparativa/métodos , Metaanálisis como Asunto , Guías de Práctica Clínica como Asunto , Ensayos Clínicos Controlados Aleatorios como Asunto/métodos , Evaluación de la Tecnología Biomédica/métodos , Humanos , Mecanismo de Reembolso
19.
Carbohydr Res ; 384: 119-27, 2014 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-24394883

RESUMEN

The Lactic acid bacteria (LAB) Lactobacillus acidophilus sp. 5e2 and Lactobacillus helveticus sp. Rosyjski both secrete exopolysaccharides (EPSs) into their surrounding environments during growth. A number of EPSs have previously been shown to exhibit immunomodulatory activity with professional immune cells, such as macrophages, but only limited studies have been reported of their interaction with intestinal epithelial cells. An investigation of the immunomodulatory potential of pure EPSs, isolated from cultures of Lactobacillus acidophilus sp. 5e2 and Lactobacillus helveticus sp. Rosyjski, with the HT29-19A intestinal epithelial cell line are reported here. For the first time the structure of the EPS from Lactobacillus helveticus sp. Rosyjski which is a hetropolysaccharide with a branched pentasaccharide repeat unit containing d-glucose, d-galactose and N-acetyl-d-mannosamine is described. In response to exposure to lactobacilli EPSs HT29-19A cells produce significantly increased levels of the proinflammatory cytokine IL-8. Additionally, the EPSs differentially modulate the mRNA expression of Toll-like receptors. Finally, the pre-treatment of HT29-19A cells with the EPSs sensitises the cells to subsequent challenge with bacterial antigens. The results reported here suggest that EPSs could potentially play a role in intestinal homeostasis via a specific interaction with intestinal epithelial cells.


Asunto(s)
Células Epiteliales/inmunología , Inmunomodulación/inmunología , Intestinos/citología , Lactobacillus acidophilus/química , Lactobacillus helveticus/química , Polisacáridos Bacterianos/química , Polisacáridos Bacterianos/inmunología , Conformación de Carbohidratos , Células Epiteliales/citología , Células Epiteliales/efectos de los fármacos , Células HT29 , Humanos , Inmunomodulación/efectos de los fármacos , Polisacáridos Bacterianos/aislamiento & purificación , Polisacáridos Bacterianos/farmacología
20.
Carbohydr Res ; 363: 51-7, 2012 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-23123572

RESUMEN

Xyloisosaccharinic acid is one of the major degradation products formed during the alkali catalysed hydrolysis of hemicelluloses. In acidic solution xyloisosaccharinic acid undergoes an acid catalysed lactonisation to generate xyloisosaccharino-1,4-lactone. We report here the solution phase properties of xyloisosaccharinic including measurement of its aqueous pK(a) (3.00 ± 0.05) using (13)C NMR methods. We also report rate constants for the acid catalysed lactonisation, k(lact(D20)), of xyloisosaccharinic acid and the results of our investigations of the kinetics of hydrolysis of xyloisosaccharino-1,4-lactone at acidic and basic pHs. The second-order rate constants for the hydrolysis reactions k(HO-) (25 M(-1)s(-1)) and k(D+) (4.13 E-4M(-1)s(-1)).


Asunto(s)
4-Butirolactona/análogos & derivados , Azúcares Ácidos/química , Agua/química , 4-Butirolactona/química , Concentración de Iones de Hidrógeno , Soluciones
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