Metabolite fingerprinting of cassava (Manihot esculenta Crantz) landraces assessed for post-harvest physiological deterioration (PPD).

Cassava landraces are impacted by post-harvest physiological deterioration (PPD). 34 primary/secondary metabolites (carotenes, flavonols, indols, phenolic, hydroxycinnamic, and organic acids) were analysed using HPLC/GC-MS in 72 landraces harvested 8 months after planting (MAP) to clarify whether these compounds may play a role in PPD tolerance. Cluster analysis differentiated a first group with high organic acids contents, citric acid being dominant, a second group with landraces high in tryptophan, a third group including landraces with high phenolic and hydroxycinnamic acids content, and a fourth group characterised by 8 carotenoids. PPD tolerant and susceptible landraces were present in each group. To determine if PPD is related to age of harvest, 174 landraces were harvested at 6, 8, 10 and 12 MAP. Scopoletin, sucrose and glucose were analysed. PPD was positively correlated with DMC and negatively correlated with scopoletin at all ages of harvest. Scopoletin is a useful biomarker to characterize landraces.

Abscisic acid phytohormone estimation in tubers and shoots of Ipomoea batatas subjected to long drought stress using competitive immunological assay.

Sweet potato (Ipomoea batatas L.), typically cultivated in temperate climates under low inputs, is one of the most important crops worldwide. Abscisic acid (ABA) is an important plant stress-induced phytohormone. Hitherto, few works analyzed the ABA function in sweet potato tissue growth. Very scarce information is available concerning the ABA role in sweet potato response to water scarcity conditions. Here, we show the ABA content variation in shoots and tubers of eight sweet potato accessions subjected to drought stress. ABA was also related to other resistance traits, such as chlorophyll content index (CCI), carbon isotopic discrimination (Δ13 C), oxalic acid (OA) and water use efficiency (WUE), to assess stress response mechanisms to water deficit between their organs. The most resilient drought-stressed sweet potato plants accumulated ABA-shoot, and significantly decreased the ABA-tuber content. ABA signaling was related to Δ13 C and CCI decrease and WUE increment, as an attempt to cope with water stress by partially closing the stomata. The partial closure of stomata could be in part due to the presence of OA-shoots, known to affect the intensity of the ABA-shoot signal in stomatal closure. Higher CCI content and minimal Δ13 C-shoot differences indicated good carboxylation fractionation, with higher Δ13 C-tuber content as an indicator of efficient tuber 13 C fixation and growth. Our work demonstrated that ABA could be used in conjunction with the other traits studied for the assessment of sweet potato whole-plant responses to environmental stresses, and thus aid the selection of the best drought tolerant genotypes for breeding programs.

Changes in oxalate composition and other nutritive traits in root tubers and shoots of sweet potato (Ipomoea batatas L. [Lam.]) under water stress.

BACKGROUND: The presence of insoluble calcium oxalate druse crystals (CaOx) in sweet potato (Ipomoea batatas) can negatively affect its nutritional quality. Photosynthesis, starch, and protein composition are linked with oxalate synthesis and tuber quality under water scarcity. Our main objective was the oxalate quantitation of sweet potato tubers and shoots and also to assess how drought changes their nutritional value. Eight sweet potato accessions from Madeira, the Canaries and Guinea-Bissau were analyzed for their response to drought stress. Tubers and shoots were analyzed for total (T-Ox), soluble (S-Ox) and insoluble (CaOx) oxalates, protein, chlorophyll content index (CCI), soluble starch, starch swelling power, and starch solubility in water. RESULTS: The S-Ox and CaOx content was higher in shoots. Six accessions were above maximum CaOx levels for raw consumption. Accessions with more favorable responses to drought had decreased CaOx with S-Ox increase content for osmoregulation. They also presented slightly decreased CCI and protein contents. These accessions also had an increased shoot starch content, for further tuber storage starch hydrolysis, and maintained the quality and functional properties of the tuber starch grain. Those with a less favorable response to drought had a higher T-Ox and CaOx content in both organs, hindering water absorption. They also had decreased protein and CCI, with a slight increase in tuber starch hydrolysis. CONCLUSION: Oxalate content was significantly related to carbohydrate metabolism, CCI, and protein synthesis. This study significantly contributed to the screening of the sweet potato stress response to drought, to adapt this crop to climatic change through breeding programs. © 2019 Society of Chemical Industry.

Variation of carbon and isotope natural abundances (δ15N and δ13C) of whole-plant sweet potato (Ipomoea batatas L.) subjected to prolonged water stress.

Sweet potato (Ipomoea batatas L.) is an important crop in the world, cultivated in temperate climates under low inputs. Drought changes the plant biomass allocation, together with the carbon and nitrogen isotopic composition (δ13C and δ15N), whose changes are faintly known in sweet potato crops. Here, we show the biomass allocation of eight sweet potato accessions submitted to drought during 3 months, using the δ13C, δ15N, carbon isotope discrimination (Δ13C), total carbon (TC) and water use efficiency (WUE) traits. The tolerant accessions had improved WUE, with higher TPB and TC. Storage roots and shoots had a heavier δ13C content under drought stress, with greater 13C fixation in roots. The Δ13C did not show a significant association with WUE. The δ15N values indicated a generalised N reallocation between whole-plant organs under drought, as a physiological integrator of response to environmental stress. This information can aid the selection of traits to be used in sweet potato breeding programs, to adapt this crop to climate change.

Stable isotope natural abundances (δ13C and δ15N) and carbon-water relations as drought stress mechanism response of taro (Colocasia esculenta L. Schott).

Taro (Colocasia esculenta L. Schott) is an important staple food crop in tropical and developing countries, having high water requirements. The purpose of this study was to evaluate the feasibility of using carbon and nitrogen isotopic composition (δ13C and δ15N) as a physiological indicator of taro response to drought, and elucidation of the relationship between the water use efficiency (WUE) under drought conditions and carbon isotope discrimination (Δ13C). As an alternative to WUE determination, obtained by measuring plant growth and water loss during an entire vegetative cycle, we have used Δ13C to determine the tolerance of C3 taro plants to drought. Seven taro accessions from Madeira, Canary Islands and the Secretariat of the Pacific Community (Fiji) collections were grown under greenhouse conditions and subjected to different watering regimes during a one-year cycle. Total plant biomass (TPB), WUE and δ15N were determined at the whole-plant level (WP). Corms and shoots were evaluated separately for nitrogen content (N), δ13C, Δ13C and δ15N. WUE showed positive correlation with TPB (r = 0.4) and negative with Δ13C (r = -0.3); Corm δ15N showed positive correlations with WP δ15N (r = 0.6) and corm N (r = 0.3). Accordingly, the taro plants with enhanced WUE exhibited low Δ13C and δ15N values as a physiological response to drought stress. The approach used in the present study has developed new tools that could be used in further research on taro response to environmental stresses.

Rapid quantitative determination of maltose and total sugars in sweet potato (Ipomoea batatas L. [Lam.]) varieties using HPTLC.

When a raw sweet potato root is analysed, only sucrose, glucose and fructose are present but during cooking, starch is hydrolysed into maltose giving the sweet flavour to cooked roots. This study aimed at developing an HPTLC protocol for the rapid quantitative determination of maltose and total sugars in four commercial varieties and to compare them to 243 hybrids grouped by flesh colour (white, orange, purple). In commercial varieties, mean maltose content varied from 10.26 to 15.60% and total sugars from 17.83 to 27.77% on fresh weight basis. Hybrids showed significant variation in maltose content within each group, with means ranging from 7.65% for white-fleshed, to 8.53% in orange- and 11.98% in purple-fleshed. Total mean sugars content was 20.24, 22.11 and 26.84% respectively for white, orange and purple flesh hybrids. No significant correlations were detected between individual sugars but maltose and total sugars content were highly correlated. Compared to the best commercial variety (Baby), 25 hybrids (10.3%) presented a higher maltose content and 40 (16.5%) showed a higher total sugars content. HPTLC was observed as an attractive, cost efficient, high-throughput technique for quantitating maltose and total sugars in sweet potatoes. Perspectives for improving sweet potato quality for consumers' requirements are also discussed.

Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.

Yams (Dioscorea sp.) are staple food crops for millions of people in tropical and subtropical regions. Dioscorea alata, also known as greater yam, is one of the major cultivated species and most widely distributed throughout the tropics. Despite its economic and cultural importance, very little is known about its origin, diversity and genetics. As a consequence, breeding efforts for resistance to its main disease, anthracnose, have been fairly limited. The objective of this study was to contribute to the understanding of D. alata genetic diversity by genotyping 384 accessions from different geographical regions (South Pacific, Asia, Africa and the Caribbean), using 24 microsatellite markers. Diversity structuration was assessed via Principal Coordinate Analysis, UPGMA analysis and the Bayesian approach implemented in STRUCTURE. Our results revealed the existence of a wide genetic diversity and a significant structuring associated with geographic origin, ploidy levels and morpho-agronomic characteristics. Seventeen major groups of genetically close cultivars have been identified, including eleven groups of diploid cultivars, four groups of triploids and two groups of tetraploids. STRUCTURE revealed the existence of six populations in the diploid genetic pool and a few admixed cultivars. These results will be very useful for rationalizing D. alata genetic resources in breeding programs across different regions and for improving germplasm conservation methods.

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.

Cassava (Manihot esculenta) provides calories and nutrition for more than half a billion people. It was domesticated by native Amazonian peoples through cultivation of the wild progenitor M. esculenta ssp. flabellifolia and is now grown in tropical regions worldwide. Here we provide a high-quality genome assembly for cassava with improved contiguity, linkage, and completeness; almost 97% of genes are anchored to chromosomes. We find that paleotetraploidy in cassava is shared with the related rubber tree Hevea, providing a resource for comparative studies. We also sequence a global collection of 58 Manihot accessions, including cultivated and wild cassava accessions and related species such as Ceará or India rubber (M. glaziovii), and genotype 268 African cassava varieties. We find widespread interspecific admixture, and detect the genetic signature of past cassava breeding programs. As a clonally propagated crop, cassava is especially vulnerable to pathogens and abiotic stresses. This genomic resource will inform future genome-enabled breeding efforts to improve this staple crop.

Comparative analysis of genetic variation in kava (Piper methysticum) assessed by SSR and DArT reveals zygotic foundation and clonal diversification.

Kava (Piper methysticum) is a major cash crop in the Pacific. The aim of this study was to assess genetic variation among 103 accessions of kava using SSRs and DArTs. Genetic structure was determined using clustering analyses (WPGMA) and principal coordinate analyses (PCA). Thirteen SSR primers and 75 DArT markers were found polymorphic, and the two types of markers generated similar clustering patterns. Genetic distances ranged from 0 to 0.65 with an average of 0.24 using SSRs and from 0 to 0.64 with an average of 0.24 using DArT. Eleven genotypes were identified with SSR while 28 genotypes were identified with DArT markers. By combining the two sets of markers, a total of only 30 distinct genotypes were observed. In the Vanuatu archipelago, noble cultivars originating from different islands clustered together within a very narrow genetic base despite their diversity of morphotypes. SSR and DArT fingerprints allowed the identification of kava cultivars unsuitable for consumption, so called two-days, and clearly differentiated the wild types classified as P. methysticum var. wichmannii from the cultivars as var. methysticum. Molecular data reveals that all noble cultivars evolved by the predominance of clonal selection. Although they are represented by clearly distinct morphotypes, these cultivars are genetically vulnerable and their potential to adapt to forthcoming changes is limited. These newly developed markers provide high resolution and will be useful for kava diversity analyses and quality assessment.

Variation of mineral composition in different parts of taro (Colocasia esculenta) corms.

Taro (Colocasia esculenta) is an important root crop in the humid tropics and a valuable source of essential mineral nutrients. In the presented study, we compared the mineral compositions of four main parts of taro corm: the upper, marginal, central and lower (basal) parts. The freeze-dried taro samples were analysed for eleven minerals (K, P, Mg, Ca, Zn, Fe, Mn, Cu, Cd, Pb and Cr). The upper part, which plays a critical role in vegetative propagation based on headsets, contained high levels of P, Mg, Zn, Fe, Mn, Cu and Cd. The central part, which is essential for human nutrition, was characterised by higher concentrations of K, P, Mg, Zn, Fe, Cu and Cd. Ca was concentrated in the lower and marginal parts. The effect of the genotype was significant for more than half of the analysed minerals (i.e., Mg, Ca, Zn, Fe, Mn).