Effects of photoperiod on the growth and physiological responses in Ulva prolifera under constant and diurnal temperature difference conditions.

Photoperiod and temperature are two main factors in the growth of macroalgae, and changes in photoperiod and diurnal temperature difference exist in natural condition. In order to study the effects of photoperiod and diurnal temperature difference on the growth of green algae Ulva prolifera, we cultured this species under three light/dark cycles (light: dark = 10:14, 12:12 and 16:08) with constant (22 °C for light and dark period, noted as 22-22 °C) and diurnal temperature difference (22 °C and 16 °C for light and dark period, respectively, noted as 22-16 °C) conditions. The results showed that: 1) Compared with 10:14 light/dark cycle, the growth of U. prolifera under 12:12 light/dark cycle was significantly enhanced by 39% and 16% for 22-22 °C and 22-16 °C treatments, respectively, while the increase proportion decreased when the daylength increase from 12 h to 16 h. 2) The enhancement in growth induced by diurnal temperature difference was observed under 10:14 light/dark cycle, but not for 12:12 and 16:08 light/dark cycle treatments. 3) The Chl a content and photosynthetic rate increased under short light period and 22-22 °C conditions, while under 22-16 °C conditions, higher photosynthetic rate was observed under 12:12 light/dark cycle and no significant difference in Chl a content was observed. 4) Under 22-22 °C conditions, compared with 10:14 (L:D) treatment, the expression levels of proteins in light-harvesting complexes, PSII and carbon fixation were down regulated, while the photorespiration and pentose phosphate pathway (PPP) were up regulated by 16:08 light dark cycle. Then we speculate that the higher photosynthetic rate may be one compensation mechanism in short photoperiod, and under long light period condition the up regulations of photorespiration and PPP can be in charge of the decrease in enhancement growth induced by longer daylength.

Effects of salinity on the performance, microbial community, and functional genes among 4-chlorophenol wastewater treatment.

Chlorophenols frequently occur alongside salinity in industrial wastewater; thus, the effects of low concentrations of salinity (NaCl, 100 mg/L) on sludge performance, microbial community, and functional genes were deeply analyzed among 4-chlorophenol (4-CP, 2.4-4.0 mg/L) wastewater treatment. The influent 4-CP was effectively degraded, but the efficiencies for PO43--P, NH4+-N, and organics reduction were slightly inhibited by NaCl stress. Long-term NaCl and 4-CP stress significantly stimulated the secretion of extracellular polymeric substances (EPS). The abundances of predominant microbes at different taxonomic levels were affected by NaCl, and the increased relative abundances of functional genes encoding proteins contributed to resist NaCl and 4-CP stress. The functional genes associated with phosphorus metabolism and nitrogen metabolism in nitrification were unaffected, but the functional genes in denitrification increased in diversity under NaCl stress in 4-CP wastewater treatment. This finding acquires useful insight into the wastewater treatment with low chlorophenols and low salinity.

Enhancement of growth in Ulva prolifera by diurnal temperature difference combined with nitrogen enrichment.

Many studies have documented the responses of Ulva prolifera to environmental factors. However, the diurnal temperature differences and interactive effects of eutrophication are usually ignored. In this study, we selected U. prolifera as material to examine the effects of diurnal temperature on growth, photosynthesis and primary metabolites under two nitrogen levels. We cultured U. prolifera seedlings under two temperature conditions (22-22 °C: 22 °C during day and night; 22-18 °C: 22 °C during day and 18 °C at night) and two nitrogen levels (LN: 0.1235 mg L-1; HN: and 0.6 mg L-1). The results showed that 1) HN-grown thalli had higher growth rates, the chlorophyll a (Chl a) content, photosynthesis, superoxide dismutase (SOD) activity, soluble sugar, and protein contents under the two temperature conditions; 2) The growth of thalli was enhanced by 22-18 °C condition compared with 22-22 °C, but the increase was only significant under HN condition; 3) 22-18°C-grown thalli had a lower net photosynthetic rate, maximal quantum yield (Fv/Fm), and dark respiration rate (Rd) than those grown at 22-22 °C; 4) No significant effects of diurnal temperature difference were detected on the SOD activity and soluble sugar content under LN and HN conditions, while the soluble protein content was enhanced by 22-18 °C under LN condition; 5) The nitrogen affected metabolite variations in U. prolifera more significantly than the diurnal temperature difference. The metabolite levels in the tricarboxylic acid cycle, amino acid, phospholipids, pyrimidine, and purine metabolism pathways increased under HN condition. The levels of glutamine, γ-aminobutyrate (GABA), 1-aminocyclopropane-1-carboxylate (ACC), glutamic acid, citrulline, glucose, sucrose, stachyose, and maltotriose were enhanced by 22-18 °C, especially under HN condition. These results identify the potential role of the diurnal temperature difference and offer new insight into the molecular mechanisms for U. prolifera responses to eutrophication and temperature.

Effects of combined 4-chlorophenol and Cu2+ on functional genes for nitrogen and phosphorus removal and heavy metal resistance genes in sequencing batch bioreactors.

The effects of combined 4-chlorophenol (4-CP) and Cu2+ on microbial community structures, functional genes for nitrogen and phosphorus removal, and heavy metal resistance genes (HMRGs) were explored in wastewater treatment using sequencing batch bioreactors (SBRs). Compared to influent 4-CP (2.3-4.5 mg/L), the removal of pollutants including chemical oxygen demands (COD), NH4+-N, PO43--P, and 4-CP was inhibited under Cu2+ stress (5 mg/L). The effects of Cu2+ on microbial community structures were more significant than those of 4-CP with respect to operational time, while the dominant function from gene information was not affected with or without influent 4-CP and Cu2+ via sequencing analysis. The influent 4-CP and Cu2+ largely influenced the dynamic changes of functional genes and HMRGs, and the abundance of partial HMRGs was correlated to the functional genes and dominant genera. This study provides insights into the treatment of combined chlorophenols and Cu2+ in wastewater.

Effects of humic acid on sludge performance, antibiotics resistance genes propagation and functional genes expression during Cu(II)-containing wastewater treatment via metagenomics analysis.

The humic acid (HA) function on the sludge performance, antibiotics resistance genes (ARGs) propagation and functional genes expression during Cu(II)-containing wastewater treatment was comprehensively investigated via metagenomics analysis. Results showed that the pollutants removal was significantly inhibited after long-term exposure of 5 mg/L Cu(II), while the inhibitory effects were moderately alleviated after addition of 10 mg/L HA. The extracellular polymeric substances (EPS) production with Cu(II) acclimation was higher than the sludge with Cu(II) and HA acclimation. The microbial community was significantly affected by the HA addition, while the relative abundance of dominant ARGs had no distinct differences with or without HA addition under Cu(II) stress. The functional genes were largely implemented for microbial metabolism, while no significant differences were found with HA addition under Cu(II) stress. Thus, the HA function for ARGs propagation and functional genes expression needed to be further research under Cu(II) stress in wastewater treatment.

Photophysiological responses of the marine macroalga Gracilariopsis lemaneiformis to ocean acidification and warming.

To study the combined effects of ocean acidification (OA) and warming on the growth and photosynthetic performance of the economically important marine macroalga Gracilariopsis lemaneiformis, thalli were grown under ambient low CO2 (390 µatm, LC) and elevated high CO2 (1000 µatm, HC) conditions with culture temperatures of 20 °C and 24 °C. Based on the evaluation of growth and photosynthetic responses to light and dissolved inorganic carbon (DIC), HC decreased the growth rate and phycoerythrin (PE) and phycocyanin (PC) levels but increased contents of UV-absorbing compounds (UVACs) in G. lemaneiformis at 20 °C, and high temperature counteracted these effects. Photosynthetic responses such as chlorophyll fluorescence parameters (maximum relative electron transport rate, rETRmax; light use efficiency, α; saturation light intensity, Ik; maximum quantum yield, FV/FM; effective quantum yield, Y(II) and non-photochemical quenching, NPQ) were not different among the treatments. However, increased oxygen evolution (Pn) and dark respiration (Rd) rates were observed at 20 °C in the HC treatment. No significant effects of HC on apparent carboxylation efficiency (ACE), maximum oxygen evolution rate (Vmax) and DIC affinity for oxygen evolution (K1/2DIC) were found, and HC synergy with high temperature increased K1/2DIC. A lower C/N ratio with decreased tissue carbon but increased nitrogen was observed under HC and high-temperature treatment. Our results indicate that high temperature may counteract the negative effects of OA on the growth and pigment characteristics of G. lemaneiformis and improve food quality, as evidenced by enhanced N per biomass.

Long-term alkaline conditions inhibit the relative abundances of tetracycline resistance genes in saline 4-chlorophenol wastewater treatment.

Considering the occurrence and spread of antibiotic resistance genes (ARGs) pose significant risks to public health, the effects of long-term exposure to alkaline conditions on the relative abundances of tetracycline resistance genes (TRGs) were studied in saline 4-chlorophenol (4-CP) wastewater treatment. Alkaline conditions were maintained by supplying the co-metabolic carbon source of sodium acetate. Results showed that except for the 4-CP, the removal of pollutants was significantly inhibited, and the relative abundances of the most TRGs were repressed. In addition, the removal of pollutants and the relative abundances of TRGs were moderately affected by the NaCl addition. The proteins in the extracellular polymeric substances (EPS) played key roles in reducing the relative abundances of TRGs, which were altered by the microbial diversity. In conclusion, for the pollutants removal and ARGs reduction in refractory industrial wastewater treatment, alkaline conditions should be maintained by selecting suitable co-metabolic carbon sources.

Application of humic acid changes the microbial communities and inhibits the expression of tetracycline resistance genes in 4-chlorophenol wastewater treatment.

The occurrence and spread of antibiotic resistance genes (ARGs) are concerns that have threatened public health for many years. However, the effects of humic acid (HA) application on the expression of ARGs in chlorophenols wastewater treatment are rarely reported. In this study, we investigated the sludge performance, including the removal of pollutants, changes in the microbial communities, and the expression of tetracycline resistance genes (TRGs), to explore the function of HA in 4-chlorophenol (4-CP) wastewater treatment at different HA concentrations. The results showed that HA application did not significantly stimulate the removal of pollutants, other than the removal of PO43--P. High-throughput sequencing analysis indicated that the application of HA influenced the microbial communities and changed the expression level of TRGs. Quantitative real-time PCR analysis showed that the expression of numerous TRGs (tetC, tetG, tetW, tetX, and intI1) was significantly inhibited by the application of HA (25 mg L-1) during 4-CP wastewater treatment. In summary, HA application played an important role in treating chlorophenols wastewater and reducing the expression of TRGs. This work aimed to provide an efficient method of reducing the expression level of ARGs in industrial wastewater treatment, which has inevitable environmental significance.

Darkness and low nighttime temperature modulate the growth and photosynthetic performance of Ulva prolifera under lower salinity.

In order to understand how darkness/irradiance and low nighttime temperature might alter physiology of Ulva prolifera under lower salinity conditions, we analyzed the growth rates, water content, superoxide dismutase (SOD) activity, total soluble proteins (SPs) and carbohydrates content at the end of dark and light period under three temperature levels (25-25 °C treatment: 25 °C for day and night; 15-15 °C treatment: 15 °C for day and night; 25-15 °C treatment: 25 °C for day with 15 °C for night) and two salinity conditions (15, 25), meanwhile, the pigment content (chlorophyll a and b), chlorophyll fluorescence and photosynthetic oxygen evolution also were determined during light phase. We found that the U. prolifera showed higher growth rate and SOD activity during dark phase at 25 °C, but this dark-induced increase could not be observed at 15 °C. The reasons for this increase varied, however, maybe not included water content and SPs for no significant difference in water content observed under all the treatments, as well as lower SPs content for dark period aside that at 15 °C and salinity 15. Compared to other two temperature treatments, the thalli grown at 25-15 °C showed higher growth rate and the photosynthetic oxygen evolution rate in light phase under salinity 15 conditions, although the maximum relative electron transport rate (rETRmax) showed higher value under 25 °C treatment. These results indicate that the darkness and the lower nighttime temperature maybe responsible reason for the rapid growth of these green tide algae.

Dynamic metabolic profiles of the marine macroalga Ulva prolifera during fragmentation-induced proliferation.

Ulva prolifera, a type of marine macroalgae, is the causative species behind green tides mainly in the Yellow Sea and adjacent regions. Nevertheless, it can be used as food or animal feed in South China. The vegetative fragments of U. prolifera are an important seed source for successive green tide blooms. Fragmentation shortens the transition time from the vegetative state to the reproductive state. However, the translation of the algal metabolites during gametogenesis is far from well understood. In this study, the dynamic metabolic profiles of U. prolifera thallus during fragmentation-induced proliferation were investigated using non-targeted metabolomics approach via a series of time course experiments in June 2017. After a 30 min low temperature shock, fragmentation induced a reproductive response of 91.57% of U. prolifera in 48 h, whereas the value was only 21.43% in the control group. A total of 156 chromatographic peaks were detected, and 63 metabolites were significantly changed in U. prolifera during reproduction. Aanlysis of the kinetic metabolic pattern showed that the fragments not only induced the formation of sporangia, but also led to complex metabolite accumulation. During fragmentation-induced proliferation, U. prolifera consumed different sugars at different time points. γ-Aminobutyric acid (GABA), glutamic acid, gallic acid, and malic acid may play important roles in germ cell formation and in the release of U. prolifera, whereas n-hexanol, 2-methyl-3-phenylindole, and 3-indoleacetonitrile may be beneficial for biotic stress resistance. Compared with the control group, in the treatment group, metabolites such as alcohols and organic acids also showed significant difference with the photoperiod at the initial stage of proliferation (before 60 h). In conclusion, changes in the levels of metabolites, including sugars, organic acids, and alcohol with photoperiod may be the strategy adopted by U. prolifera to cope with fragmentation in nature.

Salinity mediates the effects of nitrogen enrichment on the growth, photosynthesis, and biochemical composition of Ulva prolifera.

To study the combined effects of multiple nitrogen (N) sources and salinity on the growth and physiology on macroalgae, we cultured Ulva prolifera under three N levels (N0, 0.1235 mg L-1; N1, 0.6 mg L-1; and N2, 4.4 mg L-1; the ratios were 18:74:8 for NH4-N, NO3-N, and NO2-N, respectively) and three salinity conditions (15, 25, and 35). Then, the growth, pigment content, photosynthetic performance, superoxide dismutase (SOD) activity, and contents of soluble protein and carbohydrates were measured. The results showed the following: (1) Compared to that grown at salinity 25, the growth of U. prolifera decreased under salinity 35, especially under the N0 and N2 levels, but there were no significant effects of salinity 15 under any of the N levels. (2) There were no significant effects of salinity on the chlorophyll a (Chla) content, but compared to the content at salinity 25, the chlorophyll b (Chlb) content was enhanced by salinity 15 and 35; lower ratio values between Chla and carotenoids (Car) occurred under the salinity 25 treatment. Under each salinity condition, the pigments were enhanced by a high N level. (3) A relatively higher salinity level decreased the photosynthetic oxygen evolution rate, while a higher N level increased this value. Compared to the rate at salinity 25, the dark respiration rate (Rd) significantly increased at salinity 15 under the N0 condition. (4) SOD activity was enhanced by a high N level, but no significant effects of salinity were observed. (5) The carbohydrate content was enhanced at salinity 35 under the N0 and N1 levels, and under salinity 15, this value increased with increasing N levels. In conclusion, although the growth of U. prolifera decreased at high N levels under high salinity conditions, a high N level induced an increase in photosynthesis, while no significant decrease in growth occurred. These findings indicate that low salinity and high N levels may be nonnegligible reasons why this species thrives, and low salinity was the better choice when this species was used for wastewater treatment.

Functional responses of smaller and larger diatoms to gradual CO2 rise.

Diatoms and other phytoplankton groups are exposed to abrupt changes in pCO2, in waters in upwelling areas, near CO2 seeps, or during their blooms; or to more gradual pCO2 rise through anthropogenic CO2 emissions. Gradual CO2 rises have, however, rarely been included in ocean acidification (OA) studies. We therefore compared how small (Thalassiosira pseudonana) and larger (Thalassiosira weissflogii) diatom cell isolates respond to gradual pCO2 rises from 180 to 1000 µatm in steps of ~40 µatm with 5-10 generations at each step, and whether their responses to gradual pCO2 rise differ when compared to an abrupt pCO2 rise imposed from ambient 400 directly to 1000 µatm. Cell volume increased in T. pseudonana but decreased in T. weissflogii with an increase from low to moderate CO2 levels, and then remained steady under yet higher CO2 levels. Growth rates were stimulated, but Chl a, particulate organic carbon (POC) and cellular biogenic silica (BSi) decreased from low to moderate CO2 levels, and then remained steady with further CO2 rise in both species. Decreased saturation light intensity (Ik) and light use efficiency (α) with CO2 rise in T. pseudonana indicate that the smaller diatom becomes more susceptible to photoinhibition. Decreased BSi/POC (Si/C) in T. weissflogii indicates the biogeochemical cycles of both silicon and carbon may be more affected by elevated pCO2 in the larger diatom. The different CO2 modulation methods resulted in different responses of some key physiological parameters. Increasing pCO2 from 180 to 400 µatm decreased cellular POC and BSi contents, implying that ocean acidification to date has already altered diatom contributions to carbon and silicon biogeochemical processes.

Effects of 4-chlorophenol toxicity on sludge performance and microbial community in sequencing batch reactors.

In this study, the effects of 4-chlorophenol (4-CP) influent concentrations ranging from 10 to 100 mg L-1 on sludge toxicity, enzymatic activity and microbial community, along with their correlations, were investigated in a sequencing batch bioreactor (SBR), which was defined as the acclimated SBR. Another SBR was set as a control group that did not receive the influent 4-CP. The results showed that the sludge toxicity increased as the influent 4-CP increased, exhibiting a positive correlation with 4-CP loads. The enzymatic activity was stimulated after long-term acclimation with 4-CP and was positively related to the 4-CP loads and sludge toxicity. During the stable operational stages of the acclimated SBR, the microbial diversity first increased and then decreased as the 4-CP loads increased, while the similarity of the microbial community between the acclimated and control SBRs decreased with increasing 4-CP loads. The aim of this study is to provide theoretical support for reducing sludge toxicity in industrial wastewater treatment.

Comparative proteomic analysis of Ulva prolifera response to high temperature stress.

BACKGROUND: Ulva prolifera belongs to green macroalgae and is the dominant species of green tide. It is distributed worldwide and is therefore subject to high-temperature stress during the growth process. However, the adaptation mechanisms of the response of U. prolifera to high temperatures have not been clearly investigated yet. METHODS: In this study, isobaric tags for relative and absolute quantitation (iTRAQ) labelling was applied in combination with the liquid chromatography-tandem mass spectrometry (LC-MS/MS) to conduct comparative proteomic analysis of the response of U. prolifera to high-temperature stress and to elucidate the involvement of this response in adaptation mechanisms. Differentially expressed proteins (DEPs) of U. prolifera under high temperature (denote UpHT) compared with the control (UpC) were identified. Bioinformatic analyses including GO analysis, pathway analysis, and pathway enrichment analysis was performed to analyse the key metabolic pathways that underlie the thermal tolerance mechanism through protein networks. Quantitative real-time PCR and western blot were performed to validate selected proteins. RESULTS: In the present study, 1223 DEPs were identified under high temperature compared with the control, which included 790 up-regulated and 433 down-regulated proteins. The high-temperature stimulus mainly induced the expression of glutathione S-transferase, heat shock protein, ascorbate peroxidase, manganese superoxide dismutase, ubiquitin-related protein, lhcSR, rubisco activase, serine/threonine protein kinase 2, adenylate kinase, Ca2+-dependent protein kinase (CDPK), disease resistance protein EDS1, metacaspase type II, NDPK2a, 26S proteasome regulatory subunit, ubiquinone oxidoreductase, ATP synthase subunit, SnRK2s, and cytochrome P450. The down-regulated proteins were photosynthesis-related proteins, glutathione reductase, catalase-peroxidase, thioredoxin, thioredoxin peroxidase, PP2C, and carbon fixation-related proteins. Furthermore, biological index analysis indicated that protein content and SOD activity decreased; the value of Fv/Fm dropped to the lowest point after culture for 96 h. However, APX activity and MDA content increased under high temperature. CONCLUSION: The present study implied an increase in proteins that were associated with the stress response, oxidative phosphorylation, the cytokinin signal transduction pathway, the abscisic acid signal transduction pathway, and the glutathione metabolism pathway. Proteins that were associated with photosynthesis, carbon fixation in photosynthesis organisms, and the photosynthesis antenna protein pathway were decreased. These pathways played a pivotal role in high temperature regulation. These novel proteins provide a good starting point for further research into their functions using genetic or other approaches. These findings significantly improve the understanding of the molecular mechanisms involved in the tolerance of algae to high-temperature stress.

Photoperiod mediates the effects of elevated CO2 on the growth and physiological performance in the green tide alga Ulva prolifera.

Ulva spp., an increasingly important food, are the dominant species of the large-scale green tides. In this study, both the growth and the physiological responses of the Ulva prolifera were studied after cultured in three different light and dark regimes (12:12, 14:10 and 16:8-h light/dark) in combination with current (420 µatm; LC) and increased (1000 µatm; HC) levels of atmospheric CO2. Grown rate of U. prolifera was significantly enhanced by increased CO2 under the three light:dark regimes, especially under 16:8 h-light:dark, indicating that growth was C-unsaturated at present CO2 levels. U. prolifera showed a significantly higher growth rate and lower dark respiration rate (Rd) at 16:8 h-light:dark treatment than at 12:12 h-light/dark treatment, regardless of the CO2 treatment. The photochemical performance was largely unaffected by elevated CO2 and daylength. These results suggest that U. prolifera in a future CO2 enriched coastal water, seems to be resilient to higher CO2 concentrations, and this could be enhanced by longer daylength.

Effects of 4-chlorophenol wastewater treatment on sludge acute toxicity, microbial diversity and functional genes expression in an activated sludge process.

In this study, the effects of 4-chlorophenol (4-CP) wastewater treatment on sludge acute toxicity of luminescent bacteria, microbial diversity and functional genes expression of Pseudomonas were explored. Results showed that in the entire operational process, the sludge acute toxicity acclimated by 4-CP in a sequencing batch bioreactor (SBR) was significantly higher than the control SBR without 4-CP. The dominant phyla in acclimated SBR were Proteobacteria and Firmicutes, which also existed in control SBR. Some identified genera in acclimated SBR were responsible for 4-CP degradation. At the stable operational stages, the functional genes expression of Pseudomonas in acclimated SBR was down-regulated at the end of SBR cycle, and their expression mechanisms needed further research. This study provides a theoretical support to comprehensively understand the sludge performance in industrial wastewater treatment.

Effects of carbon sources on sludge performance and microbial community for 4-chlorophenol wastewater treatment in sequencing batch reactors.

Considering carbon sources are often supplied to satisfy the removal of high nitrogen and refractory pollutants in industrial wastewater, two sequencing batch reactors (SBRs) were used in this study to treat 1.5 ±â€¯0.5 mg/L 4-chlorophenol (4-CP) wastewater containing ammonium nitrogen and phosphate with different carbon sources. The favorable removal efficiencies of influent COD, NH4+-N, PO43--P, and 4-CP suggested that the both SBRs were not influenced by supplying dissolved starch and sodium acetate, respectively. The phyla Proteobacteria and Bacteroidetes were dominant in both SBRs, while the dominant phylum Candidatus Saccharibacteria was only existed in SBR with carbon source of dissolved starch. The relative abundance of bacterial communities had significant differences at class, family, and order level in both SBRs. And the mutually dominant genus in both SBRs was only Gemmobacter, which was first found in 4-CP wastewater treatment. The changed extracellular polymeric substances (EPS) were related with microbial communities.

Integration of deep transcriptome and proteome analyses of salicylic acid regulation high temperature stress in Ulva prolifera.

To investigate changes in transcript and relative protein levels in response to salicylic acid regulation of the thermotolerance in U. prolifera, complementary transcriptome and proteome analyses were performed with U. prolifera grown at 35 °C (UpHT) and with the addition of SA at high temperature (UpSHT). At mRNA level,12,296 differentially expressed genes (DEGs) were obtained from the comparison of UpSHT with UpHT. iTRAQ-labeling proteome analysis showed that a total of 4,449 proteins were identified and reliably quantified. At mRNA level, the up-regulated genes involved in antioxidant activity were thioredoxin,peroxiredoxin,FeSOD, glutathione peroxidase, partion catalase and MnSOD. The down-regulated genes were ascorbate peroxidase, glutathione S-transferase, catalase and MnSOD. In addition, the DEGs involved in plant signal transduction pathway (such as auxin response factors, BRI1 and JAZ) were down-regulated. At protein level, the up-regulated proteins involved in carbon fixation and the down-regulated protein mainly were polyubiquitin, ascorbate peroxidase. The expression of Ca2+-binding protein, heat shock protein and photosynthesis-related proteins, EDS1 were also significantly regulated both at mRNA and protein level. The results indicated that SA alleviated the high-temperature stimulus through partion antioxidant related proteins up-regulated, JA signal pathway enchanced, Ca2+-binding proteins, photosynthesis-related proteins significantly changed, antioxidant enzyme activities increased and photosynthesis index changed.

Hybrid de novo genome assembly of the Chinese herbal fleabane Erigeron breviscapus.

Background: The plants in the Erigeron genus of the Compositae (Asteraceae) family are commonly called fleabanes, possibly due to the belief that certain chemicals in these plants repel fleas. In the traditional Chinese medicine, Erigeron breviscapus , which is native to China, was widely used in the treatment of cerebrovascular disease. A handful of bioactive compounds, including scutellarin, 3,5-dicaffeoylquinic acid, and 3,4-dicaffeoylquinic acid, have been isolated from the plant. With the purpose of finding novel medicinal compounds and understanding their biosynthetic pathways, we propose to sequence the genome of E. breviscapus . We assembled the highly heterozygous E. breviscapus genome using a combination of PacBio single-molecular real-time sequencing and next-generation sequencing methods on the Illumina HiSeq platform. The final draft genome is approximately 1.2 Gb, with contig and scaffold N50 sizes of 18.8 kb and 31.5 kb, respectively. Further analyses predicted 37 504 protein-coding genes in the E. breviscapus genome and 8172 shared gene families among Compositae species. The E. breviscapus genome provides a valuable resource for the investigation of novel bioactive compounds in this Chinese herb.