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This study is focused on Escherichia spp. isolates resistant to critically important antibiotics (cefotaxime, ciprofloxacin and colistin) among Caspian gull's (Larus cachinnans) chicks nesting in the Nove Mlyny Water Reservoir, Czech Republic. The prevalence of antimicrobial resistance (AMR) in bacteria within wild birds is commonly evaluated using a single sampling event, capturing only a brief and momentary snapshot at a particular location. Therefore, the Caspian gulls in our study were sampled in May 2018 (n = 72) and May 2019 (n = 45), and a water sample was taken from the reservoir (2019). We obtained 197 isolates identified as E. coli by MALDI-TOF MS. A total of 158 representative isolates were whole-genome sequenced, 17 isolates were then reclassified to Escherichia albertii. We observed a higher (86 %; 62/72) occurrence of ESBL/AmpC-producing Escherichia spp. among gulls in 2018 compared to 38 % (17/45) in 2019 (p < 0.00001). The decrease in prevalence was linked to clonal lineage of E. coli ST11893 predominating in 2018 which carried blaCMY-2 and which was not recovered from the gulls in 2019. Oppositely, several Escherichia STs were found in gulls from both years as well as in the water sample including STs commonly recognized as internationally high-risk lineages such as ST10, ST58, ST88, ST117, ST648 or ST744. Phylogenetic analysis of E. coli from EnteroBase from countries where these particular gulls wander revealed that some STs are commonly found in various sources including humans and a portion of them is even closely related (up to 100 SNPs) to our isolates. We demonstrated that the occurrence of AMR in Escherichia can vary greatly in time in synanthropic birds and we detected both, a temporary prevalent lineage and several persistent STs. The close relatedness of isolates from gulls and isolates from EnteroBase highlights the need to further evaluate the risk connected to wandering birds.
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Antibacterianos , Charadriiformes , Charadriiformes/microbiología , Animales , Antibacterianos/farmacología , República Checa , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Escherichia coli/aislamiento & purificación , Escherichia/efectos de los fármacos , Escherichia/genética , Farmacorresistencia Bacteriana , Estudios LongitudinalesRESUMEN
A total of 1,621 wild birds representing 34 species were examined for chewing lice in reed beds in southwestern Slovakia during the pre-breeding migration 2008-2009 and 2016-2019. A total of 377 (23.3%) birds representing 15 species were parasitized by 26 species of chewing lice of 12 genera. Dominant genera were Penenirmus (with dominance 32.6%) and Menacanthus (29.4%), followed by Brueelia (12.6%), Acronirmus (10.8%), Philopterus (7.7%), and Myrsidea (4.2%). We evaluated 33 host-louse associations including both 1) host-generalist, parasitizing more than one host species and host-specific lice, occurring only on a single host species, and 2) lice species with large range geographic distribution, reported across the range of the distribution of their hosts and lice species with only occasional records from a limited area within the range of their hosts. The Bearded Reedling, Panurus biarmicus (Linnaeus, 1758), was parasitized by two species of chewing lice, Menacanthus brelihi Balát, 1981 and Penenirmus visendus (Zlotorzycka, 1964), with conspicuously different prevalences (5.6% vs. 58.2%, respectively; n = 251). New material enabled us to redescribe both species of lice: the first one is resurrected from previous synonymy as a valid species. A fragment of the mitochondrial cytochrome oxidase I gene was sequenced from these two species in order to assess their relative phylogenetic position within their genera. Our study demonstrates the importance of an adequate identification of parasites, especially on rarely examined and endangered hosts.
Title: Mallophages de la Panure à moustaches (Panurus biarmicus) et diversité des associations mallophages-hôtes des oiseaux dans les roselières en Slovaquie. Abstract: Au total, 1 621 oiseaux sauvages représentant 34 espèces ont été examinés à la recherche de mallophages dans les roselières du sud-ouest de la Slovaquie au cours de la migration de pré-reproduction 20082009 et 20162019. Parmi ceux-ci, 377 oiseaux (23,3 %), représentant 15 espèces, étaient parasités par 26 espèces de mallophages de 12 genres. Les genres dominants étaient Penenirmus (avec une dominance de 32,6 %) et Menacanthus (29,4 %), suivis de Brueelia (12,6 %), Acronirmus (10,8 %), Philopterus (7,7 %) et Myrsidea (4,2 %). Nous avons évalué 33 associations mallophage-hôte comprenant à la fois 1) des espèces de mallophages généralistes, parasitant plus d'une espèce hôte, et des mallophages spécifiques, présents uniquement sur une seule espèce hôte et 2) des espèces de mallophages ayant une large répartition géographique, signalées à travers l'étendue de la répartition de leurs hôtes, et des espèces de mallophages avec seulement des observations occasionnelles dans une zone limitée à l'intérieur de l'aire de répartition de leurs hôtes. La Panure à moustaches, Panurus biarmicus (Linnaeus, 1758), était parasitée par deux espèces de mallophages, Menacanthus brelihi Balát, 1981 et Penenirmus visendus (Zlotorzycka, 1964), avec des prévalences nettement différentes (respectivement 5,6 % et 58,2 %, n = 251). Du nouveau matériel nous a permis de redécrire les deux espèces de mallophages, la première étant ressuscitée de la synonymie précédente en tant qu'espèce valide. Un fragment du gène mitochondrial de la cytochrome oxydase I a été séquencé à partir de ces deux espèces afin d'évaluer leur position phylogénétique relative au sein de leurs genres. Notre étude démontre l'importance d'une identification adéquate des parasites, en particulier sur les hôtes rarement examinés et menacés.
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Amblycera , Enfermedades de las Aves , Ischnocera , Infestaciones por Piojos , Passeriformes , Animales , Infestaciones por Piojos/epidemiología , Infestaciones por Piojos/veterinaria , Infestaciones por Piojos/parasitología , Filogenia , Eslovaquia/epidemiología , Enfermedades de las Aves/epidemiología , Enfermedades de las Aves/parasitología , Passeriformes/parasitologíaRESUMEN
Lice were collected from 579 hummingbirds, representing 49 species, in 19 locations in Brazil, Costa Rica, Honduras, Paraguay and Peru, at elevations 03000 m above sea level. The following variables were included in an ecological analysis (1) host species' mean body mass, sexual size dimorphism, sexual dichromatism, migratory behaviour and dominance behaviour; (2) mean elevation, mean and predictability of temperature, mean and predictability of precipitation of the host species' geographic area; (3) prevalence and mean abundance of species of lice as measures of infestation. Ordination methods were applied to evaluate data structure. Since the traits are expressed at different scales (nominal, interval and ratio), a principal component analysis based on d-correlations for the traits and a principal coordinates analysis based on the Gower index for species were applied. Lice or louse eggs were found on 80 (13.8%) birds of 22 species. A total of 267 lice of 4 genera, Trochiloecetes, Trochiliphagus, Myrsidea and Leremenopon, were collected, with a total mean intensity of 4.6. There were positive interactions between migration behaviour and infestation indices, with elevational migrants having a higher prevalence and abundance of lice than resident birds. Further, we found weak negative correlations between host body mass and infestation indices and positive correlations between mean elevation and prevalence and abundance of Trochiliphagus. Thus, formerly unknown differences in the ecological characteristics and infestation measures of Trochiliphagus and Trochiloecetes lice were revealed, which allows a better understanding of these associations and their potential impacts on hummingbirds.
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Phthiraptera , Animales , Insectos , Aves , Brasil/epidemiología , Costa RicaRESUMEN
Wild birds including raptors can act as vectors of clinically relevant bacteria with antibiotic resistance. The aim of this study was to investigate the occurrence of antibiotic-resistant Escherichia coli in black kites (Milvus migrans) inhabiting localities in proximity to human-influenced environments in southwestern Siberia and investigate their virulence and plasmid contents. A total of 51 E. coli isolates mostly with multidrug resistance (MDR) profiles were obtained from cloacal swabs of 35 (64%, n = 55) kites. Genomic analyses of 36 whole genome sequenced E. coli isolates showed: (i) high prevalence and diversity of their antibiotic resistance genes (ARGs) and common association with ESBL/AmpC production (27/36, 75%), (ii) carriage of mcr-1 for colistin resistance on IncI2 plasmids in kites residing in proximity of two large cities, (iii) frequent association with class one integrase (IntI1, 22/36, 61%), and (iv) presence of sequence types (STs) linked to avian-pathogenic (APEC) and extra-intestinal pathogenic E. coli (ExPEC). Notably, numerous isolates had significant virulence content. One E. coli with APEC-associated ST354 carried qnrE1 encoding fluoroquinolone resistance on IncHI2-ST3 plasmid, the first detection of such a gene in E. coli from wildlife. Our results implicate black kites in southwestern Siberia as reservoirs for antibiotic-resistant E. coli. It also highlights the existing link between proximity of wildlife to human activities and their carriage of MDR bacteria including pathogenic STs with significant and clinically relevant antibiotic resistance determinants. IMPORTANCE Migratory birds have the potential to acquire and disperse clinically relevant antibiotic-resistant bacteria (ARB) and their associated antibiotic resistance genes (ARGs) through vast geographical regions. The opportunistic feeding behavior associated with some raptors including black kites and the growing anthropogenic influence on their natural habitats increase the transmission risk of multidrug resistance (MDR) and pathogenic bacteria from human and agricultural sources into the environment and wildlife. Thus, monitoring studies investigating antibiotic resistance in raptors may provide essential data that facilitate understanding the fate and evolution of ARB and ARGs in the environment and possible health risks for humans and animals associated with the acquisition of these resistance determinants by wildlife.
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Proteínas de Escherichia coli , Escherichia coli , Animales , Humanos , Antibacterianos/farmacología , Proteínas de Escherichia coli/genética , Siberia , Antagonistas de Receptores de Angiotensina , Inhibidores de la Enzima Convertidora de Angiotensina , Aves/microbiología , Farmacorresistencia Bacteriana Múltiple/genética , Animales SalvajesRESUMEN
A total of 1185 passerine birds representing five species were examined for chewing lice in reed beds in southwestern Slovakia in spring (April) 2008, 2009 and 2016. Additional collecting focused only on chewing lice from Panurus biarmicus (Linnaeus, 1758) (Passeriformes: Panuridae) was carried out in spring (April), summer (July) and autumn (October) 2019. A total of 283 (24%) birds were parasitized by 10 species of chewing lice of four genera: Penenirmus, Menacanthus, Philopterus, and Brueelia. Most birds showed only very light (1-10 lice/host; 74%) to light infestations (11-20 lice/host; 16%). The authors found significantly higher prevalences and mean abundances of chewing lice on residents/short-distance migrants, that is, P. biarmicus, Acrocephalus melanopogon (Temminck, 1823) (Passeriformes: Acrocephalidae), than on long-distance migratory birds, that is, Acrocephalus scirpaceus (Hermann, 1804), Acrocephalus schoenobaenus (Linnaeus, 1758) (Passeriformes: Acrocephalidae), Locustella luscinioides (Savi, 1824) (Passeriformes: Locustellidae). No significant difference was found in the total mean intensity of chewing lice between these two groups of birds. Ischnoceran lice were more prevalent and abundant than amblyceran lice on residents and short-distance migrants, whereas the opposite was found on bird species that migrate long distances. A total of 146 (58%, n = 251) P. biarmicus were parasitized by 1490 chewing lice. Males of P. biarmicus showed higher prevalence and mean abundance than females with gradually descending values of prevalence, mean abundance and mean intensity from spring to autumn. The knowledge of the occurrence and population dynamics of lice on wild passerine birds can be useful in endangered species conservation programs and can also be applied to captive passerine birds, which may be analogous to resident birds in this sense.
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Enfermedades de las Aves , Ischnocera , Infestaciones por Piojos , Passeriformes , Phthiraptera , Femenino , Masculino , Animales , Infestaciones por Piojos/epidemiología , Infestaciones por Piojos/veterinaria , Eslovaquia/epidemiología , Enfermedades de las Aves/epidemiología , Animales SalvajesRESUMEN
The Black Kite (Milvus migrans) is one of the most widespread raptors in the world. The Palaearctic is populated by two migrating subspecies, Milvus migrans migrans and Milvus migrans lineatus, in the western and eastern part of this realm, respectively. There is a large intergradation zone of M. m. migrans/M. m. lineatus in-between. Although the migration routes of M. m. migrans from Europe to Sub-Saharan Africa and the Middle East are well known, detailed information about migration routes of Black Kites from intergradation zone are missing. Using satellite telemetry we are able to fill this gap in our knowledge of these birds. We tagged with GPS/SMS/GPRS telemetry loggers 13 and 6 Black Kite pulli in lowland around Biysk (Altai Krai, Russia) and in mountains around Kosh-Agach (Altai Republic, Russia), respectively. After fledging, Black Kites from both subpopulations stayed in a small, non-overlapping areas and then migrated to southern Asia through narrow corridors. Black Kites originating from Biysk migrated through the Western Circum-Himalayan Corridor. Black Kites originating from Kosh-Agach used the Trans-Himalayan Corridor crossing the Himalayas in altitudes of up to 6256 m asl. The average total distance travelled of Black Kites from both subpopulations was 9166 km without any significant differences between these subpopulations. Timing of both spring and autumn migration did not vary along different age groups. Black Kites from both subpopulations wintered in low elevations of Pakistan and India. Birds wintered on average for 190 days, and the mean area of individual home ranges in winter was 4704 km2. During the breeding period, birds dwelled in south-western Siberia, where they spent on average 125 days with an average home range size 3537 km2. We found that ontogenetic shifts in migratory behaviour of Black Kites from Eastern Russia differ from those in population/subspecies in Europe. Black Kites crossing the Himalayas fly and, moreover, stay for hours resting at night in the environment of mountains at altitudes over 5000 m.
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Aves , Rapaces , Animales , Pakistán , Estaciones del Año , SiberiaRESUMEN
The Australian silver gull is an urban-adapted species that frequents anthropogenic waste sites. The enterobacterial flora of synanthropic birds often carries antibiotic resistance genes. Whole-genome sequence analyses of 425 Escherichia coli isolates from cloacal swabs of chicks inhabiting three coastal sites in New South Wales, Australia, cultured on media supplemented with meropenem, cefotaxime, or ciprofloxacin are reported. Phylogenetically, over 170 antibiotic-resistant lineages from 96 sequence types (STs) representing all major phylogroups were identified. Remarkably, 25 STs hosted the carbapenemase gene blaIMP-4, sourced only from Five Islands. Class 1 integrons carrying blaIMP and blaOXA alongside blaCTX-M and qnrS were notable. Multiple plasmid types mobilized blaIMP-4 and blaOXA-1, and 121 isolates (28%) carried either a ColV-like (18%) or a pUTI89-like (10%) F virulence plasmid. Phylogenetic comparisons to human isolates provided evidence of interspecies transmission. Our study underscores the importance of bystander species in the transmission of antibiotic-resistant and pathogenic E. coli. IMPORTANCE By compiling various genomic and phenotypic data sets, we have provided one of the most comprehensive genomic studies of Escherichia coli isolates from the Australian silver gull, on media containing clinically relevant antibiotics. The analysis of genetic structures capturing antimicrobial resistance genes across three gull breeding colonies in New South Wales, Australia, and comparisons to clinical data have revealed a range of trackable genetic signatures that highlight the broad distribution of clinical antimicrobial resistance in more than 170 different lineages of E. coli. Conserved truncation sizes of the class 1 integrase gene, a key component of multiple-drug resistance structures in the Enterobacteriaceae, represent unique deletion events that are helping to link seemingly disparate isolates and highlight epidemiologically relevant data between wildlife and clinical sources. Notably, only the most anthropogenically affected of the three sites (Five Islands) was observed to host carbapenem resistance, indicating a potential reservoir among the sites sampled.
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Antiinfecciosos , Charadriiformes , Animales , Humanos , Escherichia coli/genética , Charadriiformes/microbiología , Animales Salvajes , Australia/epidemiología , Filogenia , Enterobacteriaceae , Farmacorresistencia Microbiana , Antibacterianos/farmacologíaRESUMEN
Poultry represents a common source of bacteria with resistance to antibiotics including the critically important ones. Selective cultivation using colistin, cefotaxime and meropenem was performed for 66 chicken samples coming from 12 farms in Paraguay while two breeding companies supplied the farms. A total of 62 Escherichia coli and 22 Klebsiella pneumoniae isolates were obtained and representative isolates were subjected to whole-genome sequencing. Relatively high prevalence of phylogenetic group D and F was observed in E. coli isolates and several zoonotic sequence types (STs) including ST457 (14 isolates), ST38 (5), ST10 (2), ST117 (2) or ST93 (4) were detected. Isolates from three farms, which purchased chicken from a Paraguayan hatchery showed higher prevalence of mcr-5.1 and blaCTX-M-8 compared to the other nine farms, which purchased chickens from a Brazilian hatchery. Moreover, none of the K. pneumoniae isolates were linked to the Paraguayan hatchery. ESBL/AmpC and mcr-5-carrying multi-drug resistant (MDR) plasmids were characterized, and complete sequences were obtained for eight plasmids. The study shed light on Paraguayan poultry farms as a reservoir of antibiotic resistance commonly conferred via MDR plasmids and showed linkage between resistance and origin of the chickens at the hatcheries level.
RESUMEN
Wild corvids were examined for the presence of carbapenemase-producing Gram-negative bacteria in the United States. A total of 13 isolates were detected among 590 fecal samples of American crow; 11 Providencia rettgeri isolates harboring blaIMP-27 on the chromosome as a class 2 integron gene cassette within the Tn7 transposon, 1 Klebsiella pneumoniae ST258 isolate carrying blaKPC-2 on a pKpQIL-like plasmid as a part of Tn4401a, and 1 Enterobacter bugandensis isolate with blaIMI-1 located within EcloIMEX-2.
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Cuervos , Infecciones por Klebsiella , Animales , Antibacterianos/farmacología , Proteínas Bacterianas/genética , Enterobacter , Klebsiella pneumoniae/genética , Pruebas de Sensibilidad Microbiana , Plásmidos/genética , Providencia , Estados Unidos , beta-Lactamasas/genéticaRESUMEN
A total of 266 wild passerine birds (Passeriformes) representing eight species and nine subspecies from three islands of the Archipelago of the Azores were examined for ectoparasites. Two species of louse-flies Ornithomya avicularia and Ornithoica turdi (Diptera: Hippoboscidae), three species of fleas Ceratophyllus gallinae, Ceratophyllus sp. and Dasypsyllus gallinulae (Siphonaptera: Ceratophyllidae), and 11 species of chewing lice belonging to the genera Menacanthus, Myrsidea (Phthiraptera: Menoponidae), Ricinus (Phthiraptera: Ricinidae), Brueelia, Guimaraesiella, Philopterus, Sturnidoecus and Turdinirmus (Phthiraptera: Philopteridae) were recorded. At least one species of ectoparasite was found on 114 birds of six species. Guimaraesiella tovornikae and Myrsidea sylviae from Sylvia atricapilla are redescribed. Records of Ceratophyllus sp. and Sturnidoecus sp. from Turdus merula represent new parasite-host associations. Phoresy of Guimaraesiella amsel on Ornithoica turdi was also found. Parasitological parameters such as prevalence, intensity and abundance and geographic distribution of recorded ectoparasites are provided.
TITLE: Insectes ectoparasites de passereaux sauvages aux Açores. ABSTRACT: Un total de 266 passereaux sauvages (Passeriformes) de trois îles de l'archipel des Açores, représentant huit espèces et neuf sous-espèces, ont été examinés pour la recherche d'ectoparasites. Deux espèces de mouches-araignées, Ornithomya avicularia et Ornithoica turdi (Diptera : Hippoboscidae), trois espèces de puces, Ceratophyllus gallinae, Ceratophyllus sp. et Dasypsyllus gallinulae (Siphonaptera : Ceratophyllidae), et onze espèces de mallophages appartenant aux genres Menacanthus, Myrsidea (Phthiraptera : Menoponidae), Ricinus (Phthiraptera : Ricinidae), Brueelia, Guimaraesiella, Philopterus, Sturnidoecus et Turdinirmus (Phthiraptera : Philopteridae) sont signalées. Au moins une espèce d'ectoparasite a été trouvée sur 114 oiseaux de six espèces. Guimaraesiella tovornikae et Myrsidea sylviae, de Sylvia atricapilla, sont redécrits. Les signalements de Ceratophyllus sp. et Sturnidoecus sp. chez Turdus merula représentent de nouvelles associations parasites-hôtes. La phorésie de Guimaraesiella amsel sur Ornithoica turdi a également été trouvée. Les paramètres parasitologiques des ectoparasites signalés, tels que la prévalence, l'intensité, l'abondance et la répartition géographique, sont fournis.
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Enfermedades de las Aves , Infestaciones Ectoparasitarias , Insectos , Passeriformes , Animales , Azores , Enfermedades de las Aves/epidemiología , Enfermedades de las Aves/parasitología , Dípteros/fisiología , Infestaciones Ectoparasitarias/parasitología , Femenino , Insectos/fisiología , Masculino , Passeriformes/parasitología , Phthiraptera/fisiología , Siphonaptera/fisiologíaRESUMEN
Silver gulls carry phylogenetically diverse Escherichia coli, including globally dominant extraintestinal pathogenic E. coli (ExPEC) sequence types and pandemic ExPEC-ST131 clades; however, our large-scale study (504 samples) on silver gulls nesting off the coast of New South Wales identified E. coli ST457 as the most prevalent. A phylogenetic analysis of whole-genome sequences (WGS) of 138 ST457 samples comprising 42 from gulls, 2 from humans (Australia), and 14 from poultry farmed in Paraguay were compared with 80 WGS deposited in public databases from diverse sources and countries. E. coli ST457 strains are phylogenetic group F, carry fimH145, and partition into five main clades in accordance to predominant flagella H-antigen carriage. Although we identified considerable phylogenetic diversity among the 138 ST457 strains, closely related subclades (<100 SNPs) suggested zoonotic or zooanthroponosis transmission between humans, wild birds, and food-producing animals. Australian human clinical and gull strains in two of the clades were closely related (≤80 SNPs). Regarding plasmid content, country, or country/source, specific connections were observed, including I1/ST23, I1/ST314, and I1/ST315 disseminating blaCMY-2 in Australia, I1/ST113 carrying blaCTX-M-8 and mcr-5 in Paraguayan poultry, and F2:A-:B1 plasmids of Dutch origin being detected across multiple ST457 clades. We identified a high prevalence of nearly identical I1/ST23 plasmids carrying blaCMY-2 among Australian gull and clinical human strains. In summary, ST457 is a broad host range, geographically diverse E. coli lineage that can cause human extraintestinal disease, including urinary tract infection, and displays a remarkable ability to capture mobile elements that carry and transmit genes encoding resistance to critically important antibiotics.
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Infecciones por Escherichia coli , Escherichia coli , Animales , Animales Salvajes , Antibacterianos/farmacología , Australia , Escherichia coli/genética , Infecciones por Escherichia coli/veterinaria , Humanos , Filogenia , Plásmidos/genética , beta-Lactamasas/genética , beta-LactamasRESUMEN
Birds are hosts for several zoonotic pathogens. Because of their high mobility, especially of longdistance migrants, birds can disperse these pathogens, affecting their distribution and phylogeography. We focused on Borrelia burgdorferi sensu lato, which includes the causative agents of Lyme borreliosis, as an example for tick-borne pathogens, to address the role of birds as propagation hosts of zoonotic agents at a large geographical scale. We collected ticks from passerine birds in 11 European countries. B. burgdorferi s.l. prevalence in Ixodes spp. was 37% and increased with latitude. The fieldfare Turdus pilaris and the blackbird T. merula carried ticks with the highest Borrelia prevalence (92 and 58%, respectively), whereas robin Erithacus rubecula ticks were the least infected (3.8%). Borrelia garinii was the most prevalent genospecies (61%), followed by B. valaisiana (24%), B. afzelii (9%), B. turdi (5%) and B. lusitaniae (0.5%). A novel Borrelia genospecies "Candidatus Borrelia aligera" was also detected. Multilocus sequence typing (MLST) analysis of B. garinii isolates together with the global collection of B. garinii genotypes obtained from the Borrelia MLST public database revealed that: (a) there was little overlap among genotypes from different continents, (b) there was no geographical structuring within Europe, and (c) there was no evident association pattern detectable among B. garinii genotypes from ticks feeding on birds, questing ticks or human isolates. These findings strengthen the hypothesis that the population structure and evolutionary biology of tick-borne pathogens are shaped by their host associations and the movement patterns of these hosts.
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Borrelia/genética , Ixodes/microbiología , Enfermedad de Lyme/microbiología , Animales , Enfermedades de las Aves/microbiología , Europa (Continente) , Humanos , Tipificación de Secuencias Multilocus/métodos , Pájaros Cantores/microbiologíaAsunto(s)
Farmacorresistencia Bacteriana/genética , Infecciones por Escherichia coli/veterinaria , Proteínas de Escherichia coli/genética , Escherichia coli/genética , Plásmidos/genética , Transferasas (Grupos de Otros Fosfatos Sustitutos)/genética , Animales , Antibacterianos/farmacología , Pollos/microbiología , Cloaca/microbiología , ParaguayRESUMEN
The gene mcr-1 conferring resistance to last-line antibiotic colistin has been reported globally. Here, we describe the first detection of plasmid-mediated colistin resistance in Russian wildlife, an isolate of Escherichia coli sequence type 2280 from a black kite (Milvus migrans) scavenging raptor. Whole-genome sequencing and plasmid transferability experiments revealed that mcr-1.1 was located on conjugative IncI2 plasmid pDR164 (59891 bp). Migratory black kites may contribute to the global spread of mobile colistin resistance.
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Farmacorresistencia Bacteriana/genética , Infecciones por Escherichia coli/veterinaria , Proteínas de Escherichia coli/genética , Escherichia coli/genética , Rapaces/microbiología , Migración Animal , Animales , Antibacterianos/metabolismo , Antibacterianos/farmacología , Colistina/metabolismo , Colistina/farmacología , Escherichia coli/efectos de los fármacos , Escherichia coli/enzimología , Escherichia coli/aislamiento & purificación , Infecciones por Escherichia coli/epidemiología , Infecciones por Escherichia coli/microbiología , Infecciones por Escherichia coli/transmisión , Pruebas de Sensibilidad Microbiana , Plásmidos/química , Plásmidos/metabolismo , Federación de Rusia/epidemiología , Secuenciación Completa del GenomaRESUMEN
Wild animals foraging in the human-influenced environment are colonized by bacteria with clinically important antibiotic resistance. The occurrence of such bacteria in wildlife is influenced by various biological, ecological, and geographical factors which have not yet been fully understood. More research focusing on the human-animal-environmental interface and using novel approaches is required to understand the role of wild animals in the transmission of antibiotic resistance and to assess potential risks for the public health.
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Animales Salvajes/microbiología , Antibacterianos/farmacología , Animales , Bacterias/efectos de los fármacos , Bacterias/enzimología , Bacterias/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Farmacorresistencia Bacteriana , Humanos , Pruebas de Sensibilidad Microbiana , beta-Lactamasas/genética , beta-Lactamasas/metabolismoRESUMEN
BACKGROUND: Peritoneal larval cestodiasis induced by Mesocestoides Vaillant, 1863 (Cyclophyllidea: Mesocestoididae) is a common cause of severe infections in domestic dogs and cats, reported also from other mammals and less frequently from birds. However, there is a limited knowledge on the taxonomy of causative agents of this disease. RESULTS: In the present study, we investigated a massive, likely lethal, infection of a song thrush Turdus philomelos (Passeriformes: Turdidae) by Mesocestoides sp. tetrathyridia. We performed combined morphological and phylogenetic analysis of the tetrathyridia and compared them with the materials obtained previously from other birds and mammals. The metrical data fitted within the wide range reported by previous authors but confirmed the limited value of morphological data for species identification of tetrathyridia of Mesocestoides spp. The molecular analyses suggested that the isolates represented an unidentified Mesocestoides sp. that was previously repeatedly isolated and sequenced in larval and adult forms from domestic dogs and cats in Europe, the Middle East and North Africa. In contrast to the present study, which found encysted tetrathyridia, four of the five previous studies that identified the same species described infections by acephalic metacestodes only. CONCLUSIONS: The tetrathyridia of the examined Mesocestoides sp. are described in the present study for the first time. However, the possible match with the species that were previously reported to infect birds remains uncertain. The phylogenetic analyses also suggested the rejection of two cases that were previously identified as Mesocestoides corti as they were likely caused by the same species as in the presently reported infection case. The newly provided DNA sequences should allow the assignment to species in the future, when adults of the genus Mesocestoides are more thoroughly sequenced.
Asunto(s)
Cisticercosis/veterinaria , Mamíferos/parasitología , Mesocestoides/genética , Mascotas/parasitología , Pájaros Cantores/parasitología , Animales , Secuencia de Bases , Enfermedades de los Gatos/parasitología , Enfermedades de los Gatos/transmisión , Gatos , Cisticercosis/transmisión , Enfermedades de los Perros/parasitología , Enfermedades de los Perros/transmisión , Perros , Resultado Fatal , Femenino , Mesocestoides/patogenicidad , FilogeniaRESUMEN
Mites of the family Pterygosomatidae are usually infesting lizards, geckos and iguanas. In this family, the genus Geckobiella Hirst, 1917 comprises 12 species including Geckobiella donnae Paredes-León, Klompen et Pérez, 2012. We collected 48 mites of G.donnae from 10 captive iguanas Ctenosaura bakeri Stejneger (Reptilia: Iguanidae) out of 23 examined individuals (prevalence 43% ) in Iguana Research and Breeding Station on Isla de Utila, Islas de la Bahía, Honduras on 1 September 2014. Males of G. donnae occurred together with females. The male of G. donnae is described here for the first time. We speculated that G. donnae is autochthonous on Isla de Utila with C. bakeri as a natural host or that it was transmitted to C. bakeri from Iguana iguana (Linnaeus) native to Utila or introduced to Utila from the North American/Central American mainland by a host kept as a pet.
Asunto(s)
Iguanas , Infestaciones por Ácaros/veterinaria , Ácaros/anatomía & histología , Ácaros/fisiología , Animales , Honduras/epidemiología , Masculino , Infestaciones por Ácaros/epidemiología , Infestaciones por Ácaros/parasitología , PrevalenciaRESUMEN
The pathogenic extended-spectrum-beta-lactamase (ESBL)-producing Escherichia coli lineage ST648 is increasingly reported from multiple origins. Our study of a large and global ST648 collection from various hosts (87 whole-genome sequences) combining core and accessory genomics with functional analyses and in vivo experiments suggests that ST648 is a nascent and generalist lineage, lacking clear phylogeographic and host association signals. By including large numbers of ST131 (n = 107) and ST10 (n = 96) strains for comparative genomics and phenotypic analysis, we demonstrate that the combination of multidrug resistance and high-level virulence are the hallmarks of ST648, similar to international high-risk clonal lineage ST131. Specifically, our in silico, in vitro, and in vivo results demonstrate that ST648 is well equipped with biofilm-associated features, while ST131 shows sophisticated signatures indicative of adaption to urinary tract infection, potentially conveying individual ecological niche adaptation. In addition, we used a recently developed NFDS (negative frequency-dependent selection) population model suggesting that ST648 will increase significantly in frequency as a cause of bacteremia within the next few years. Also, ESBL plasmids impacting biofilm formation aided in shaping and maintaining ST648 strains to successfully emerge worldwide across different ecologies. Our study contributes to understanding what factors drive the evolution and spread of emerging international high-risk clonal lineages.
Asunto(s)
Farmacorresistencia Bacteriana Múltiple/genética , Escherichia coli/genética , Factores de Virulencia/genética , Virulencia/genética , Animales , Antibacterianos/farmacología , Bacteriemia/tratamiento farmacológico , Bacteriemia/microbiología , Biopelículas/efectos de los fármacos , Pollos/microbiología , Escherichia coli/efectos de los fármacos , Infecciones por Escherichia coli/tratamiento farmacológico , Infecciones por Escherichia coli/microbiología , Genómica/métodos , Humanos , Tipificación de Secuencias Multilocus/métodos , Plásmidos/genética , Infecciones Urinarias/tratamiento farmacológico , Infecciones Urinarias/microbiología , Secuenciación Completa del Genoma/métodos , beta-Lactamasas/genéticaRESUMEN
The chiggers (Acari: Trombiculidae) Blankaartia sinnamaryi (Floch et Fauran, 1956), Parasecia soucouyanti (Brennan et Yunker, 1966), Eutrombicula lipovskyana (Wolfenbarger, 1952) and Neoschoengastia dalmati Brennan, 1951 were found in Honduras on a total of twelve bird species. Parasecia soucouyanti was recorded parasitising birds for the first time. All these mites are here reported from Honduras for the first time.
Asunto(s)
Enfermedades de las Aves/epidemiología , Aves , Infestaciones por Ácaros/veterinaria , Trombiculidae/fisiología , Animales , Enfermedades de las Aves/parasitología , Honduras/epidemiología , Larva/fisiología , Infestaciones por Ácaros/epidemiología , Infestaciones por Ácaros/prevención & control , Prevalencia , Trombiculidae/crecimiento & desarrolloRESUMEN
Twenty-four species of chewing lice of the genus Myrsidea Waterston, 1915 (Phthiraptera: Menoponidae) from Neotropical Suboscines (Passeriformes: Formicariidae, Furnariidae, Pipridae, Thamnophilidae, Tityridae, Tyrannidae) are recorded and discussed. They include: eight new species which are described and illustrated (Myrsidea capeki new species ex Chiroxiphia caudata; Myrsidea leptopogoni new species ex Leptopogon superciliaris; Myrsidea leucophthalmi new species ex Automolus leucophthalmus; Myrsidea pachyramphi new species ex Pachyramphus polychopterus; Myrsidea philydori new species ex Philydor rufum; Myrsidea pyriglenae new species ex Pyriglena leucoptera; Myrsidea scleruri new species ex Sclerurus scansor and Myrsidea zuzanae new species ex Furnarius rufus), as well as nine previously known species with additional data on intraspecific morphological variability, host associations and geographical distribution (Myrsidea barbati Price, Hellenthal Dalgleish, 2005; Myrsidea dalgleishi Valim, Price Johnson, 2011; Myrsidea flaviventris Price, Hellenthal Dalgleish, 2005; Myrsidea klimesi Sychra, 2006; Myrsidea meyi Valim, Price Johnson, 2011; Myrsidea oleaginei Price, Hellenthal Dalgleish, 2005; Myrsidea olivacei Price, Hellenthal Dalgleish, 2005; Myrsidea pitangi Price, Hellenthal Dalgleish, 2005 and Myrsidea spellmani Price, Johnson Dalgleish, 2008b). Seven further species are recorded at genus level only due to lack of adequate material. A 379 bp portion of the mitochondrial cytochrome oxidase I (COI) gene was sequenced from seven species in order to assess relative genetic divergences among Myrsidea populations.