Ratchetaxis in Channels: Entry Point and Local Asymmetry Set Cell Directions in Confinement.

Cell motility is essential in a variety of biological phenomena ranging from early development to organ homeostasis and diseases. This phenomenon has mainly been studied and characterized on flat surfaces in vitro, whereas such conditions are rarely observed in vivo. Recently, cell motion in three-dimensional microfabricated channels was reported to be possible, and it was shown that confined cells push on walls. However, rules setting cell directions in this context have not yet been characterized. Here, we show by using assays that ratchetaxis operates in three-dimensional ratchets in fibroblasts and epithelial cancerous cells. Open ratchets rectify cell motion, whereas closed ratchets impose direct cell migration along channels set by the cell orientation at the channel entry point. We also show that nuclei are pressed in constriction zones through mechanisms involving dynamic asymmetries of focal contacts, stress fibers, and intermediate filaments. Interestingly, cells do not pass these constricting zones when they contain a defective keratin fusion protein implicated in squamous cancer. By combining ratchetaxis with chemical gradients, we finally report that cells are sensitive to local asymmetries in confinement and that topological and chemical cues may be encoded differently by cells. Overall, our ratchet channels could mimic small blood vessels in which cells such as circulating tumor cells are confined; cells can probe local asymmetries that determine their entry into tissues and their subsequent direction. Our results shed light on invasion mechanisms in cancer.

Collective Dynamics of Focal Adhesions Regulate Direction of Cell Motion.

Directed cell motion is essential in physiological and pathological processes such as morphogenesis, wound healing, and cancer spreading. Chemotaxis has often been proposed as the driving mechanism, even though evidence of long-range gradients is often lacking in vivo. By patterning adhesive regions in space, we control cell shape and the potential to move along one direction in another migration mode coined ratchetaxis. We report that focal contact distributions collectively dictate cell directionality, and bias is non-linearly increased by gap distance between adhesive regions. Focal contact dynamics on micro-patterns allow to integrate these phenomena in a model where each focal contact is translated into a force with known amplitude and direction, leading to quantitative predictions for cell motion in new conditions with their successful experimental tests. Altogether, our study shows how local and minute timescale dynamics of focal adhesions and their distribution lead to long-term cellular motion with simple geometric rules. A record of this paper's Transparent Peer Review process is included in the Supplemental Information.

How to orient cells in microcavities for high resolution imaging of cytokinesis and lumen formation.

Imaging dynamics of cellular morphogenesis with high spatial-temporal resolution in 3D is challenging, due to the low spatial resolution along the optical axis and photo-toxicity. However, some cellular structures are planar and hence 2D imaging should be sufficient, provided that the structure of interest can be oriented with respect to the optical axis of the microscope. Here, we report a 3D microfabrication method which positions and orients cell divisions very close to the microscope coverglass. We use this approach to study cytokinesis in fission yeasts and polarization to lumen formation in mammalian epithelial cells. We show that this method improves spatial resolution on range of common microscopies, including super-resolution STED. Altogether, this method could shed new lights on self-organization phenomena in single cells and 3D cell culture systems.

Directing cell migration on flat substrates and in confinement with microfabrication and microfluidics.

Cell motility has been mainly characterized in vitro through the motion of cells on 2D flat Petri dishes, and in Boyden chambers with the passage of cells through sub-cellular sized cavities. These experimental conditions have contributed to understand important features, but these artificial designs can prevent elucidation of mechanisms involved in guiding cell migration in vivo. In this context, microfabrication and microfluidics have provided unprecedented tools to design new assays with local controls in two and three dimensions. Single cells are surrounded by specific environments at a scale where cellular organelles like the nucleus, the cortex, and protrusions can be probed locally in time and in space. Here, we report methods to direct cell motion with emphasis on micro-contact printing for 2D cell migration, and ratchetaxis/chemotaxis in 3D confinements. While sharing similarities, both environments generate distinct experimental issues and questions with potential relevance for in vivo situations.