RESUMEN
Improvement of carcass features is an essential goal in pig genetic breeding programs. Backfat (BF) and loin muscle area (LMA) are important carcass production metrics and useful indicators of pig production performance and lean meat rate. However, the genetic architecture of BF and LMA traits remains elusive. To identify quantitative trait loci (QTLs) and genes associated with these traits, we performed a genome-wide association study (GWAS) using imputation-based whole genome sequencing data for four phenotypes (adjusted 100 kg BF and LMA, adjusted 100 kg BF EBV and LMA EBV) in 1131 pigs from 3 breeds (French Yorkshire, Landrace, and Duroc). After genotype imputation and quality control, 14,163,315 single nucleotide polymorphisms (SNPs) were retained for further analysis. For the adjusted 100 kg BF trait, using the 2-LOD drop method, a QTL with a 13.4 Kb interval (2.91 to 2.93 Mb on SSC2) and containing a SHANK2 gene was defined. In addition, two QTLs with 135.40 Kb (from 66.10 to 66.23 Mb) and 3.12 Kb (from 66.886 to 66.889 Mb) intervals containing CCND2 and TSPAN11 genes, respectively, were found on SSC5. For the BF-EBV trait, two QTLs (128.77 Kb from 66.10 to 66.23 Mb on SSC5 and 42.10 Kb from 2.89 to 2.93 Mb on SSC2) were identified. Notably, CCND2 and SHANK2 were the only candidate genes in their respective QTL interval. Furthermore, we detected a 3.33 Kb (66.106 to 66.110 Mb on SSC2) haplotype block which was detected as affecting the BF_EBV trait, which only contained the CCND2 gene. Thus, we suggested CCND2 and SHANK2 as strong candidate genes for regulating the BF trait for pigs. The empirical confidence intervals of the QTLs were 1.14 Mb (165.65 to 166.79 Mb on SSC6) for adjusted 100 kg LMA and 1.49 Mb (165.26-166.74 Mb on SSC6) for LMA-EBV. These two confidence intervals contained 13 and 28 annotated genes, respectively. Our results provide a deeper understanding of the genetic basis of pig carcass traits. The identified molecular markers will be useful for selecting breeding lines for breeding pigs with superior carcass traits.
RESUMEN
Subolesin is a well-characterized protective antigen in many ticks and, thus, it is potentially useful in the development of a broad-spectrum vaccine or an autocidal gene silencing strategy to control tick infestations. A subolesin homolog was cloned from the tick Rhipicephalus haemaphysaloides, which is widespread in China, by rapid amplification of complementary DNA (cDNA) ends. Its full-length cDNA was 1386 base pairs (bp), containing a 483 bp open reading frame with a predicted molecular mass of 18.7 kilodaltons and an isoelectric point of 9.26. The subolesin protein had a typical nuclear localization signal in its amino-terminus. The full-length cDNA of R. haemaphysaloides showed 52 and 80% identities to those from Ixodes scapularis and R. microplus, respectively, whereas amino acid sequence alignments showed 80 and 97% identities, respectively. Native subolesin was recognized in the unfed tick midgut by an antibody against recombinant subolesin. Transcriptional analysis showed that subolesin was expressed in the tick's four developmental stages and in all of the tissues examined, except for the synganglion. The pathogen Babesia microti induced the subolesin transcript by fourfold. Subolesin gene silencing by RNA interference significantly decreased the larval engorgement rate, the attachment rate and body weight of engorged nymphs, and the body weight and attachment and engorgement rates of adults, as well as the egg weight per female tick. Vaccinating mice and rabbits with recombinant subolesin induced a significant protective effect, resulting in a reduction of blood feeding and oviposition. These results encourage further studies of using subolesin to control tick infestations in China.
Asunto(s)
Antígenos/genética , Antígenos/inmunología , Proteínas de Artrópodos/genética , Proteínas de Artrópodos/inmunología , Inmunización , Interferencia de ARN , Rhipicephalus/fisiología , Secuencia de Aminoácidos , Animales , Antígenos/química , Antígenos/metabolismo , Proteínas de Artrópodos/química , Proteínas de Artrópodos/metabolismo , Secuencia de Bases , Conducta Alimentaria , Larva/inmunología , Larva/fisiología , Ratones , Ratones Endogámicos BALB C , Datos de Secuencia Molecular , Ninfa/inmunología , Ninfa/fisiología , Oviposición , Óvulo/química , Óvulo/fisiología , Conejos , Proteínas Recombinantes/genética , Proteínas Recombinantes/inmunología , Proteínas Recombinantes/metabolismo , Rhipicephalus/genética , Rhipicephalus/crecimiento & desarrollo , Rhipicephalus/inmunología , Alineación de SecuenciaRESUMEN
Canine and feline hookworm infection is endemic in many countries with zoonotic transmission representing a potentially significant public health concern. However, there is limited data available on the zoonotic transmission of canine and feline hookworms in China. This study was conducted to evaluate the zoonotic risk of Ancylostoma ceylanicum isolated from stray dogs and cats in Guangzhou, south China. Primer pairs CAF/CAR were designed to amplify complete ITS sequences of obtained A. ceylanicum. The results were compared with fourteen ITS reference sequences of human-derived A. ceylanicum registered in GenBank, and phylogenetic trees were established by using NJ and ML methods. The sequence similarity of three dog-derived and five cat-derived A. ceylanicum with fourteen human-derived A. ceylanicum were 96.8%~100% and 97.8%~100%, respectively. Phylogenetic analysis placed A. ceylanicum isolated from dogs and cats in the same group with A. ceylanicum human isolates. Due to the ability of A. ceylanicum to cause a patent infection in humans, the zoonotic risk arising from dog and cat reservoirs to communities in this region should be determined.
Asunto(s)
Ancylostoma/genética , Ancylostoma/aislamiento & purificación , Anquilostomiasis/genética , ADN de Helmintos/genética , Filogenia , Zoonosis/genética , Anquilostomiasis/epidemiología , Anquilostomiasis/transmisión , Animales , Gatos , China/epidemiología , Perros , Femenino , Humanos , Masculino , Reacción en Cadena de la Polimerasa/métodos , Factores de Riesgo , Zoonosis/epidemiología , Zoonosis/transmisiónRESUMEN
Ancylostoma caninum is a blood-feeding parasitic intestinal nematode which infects dogs, cats, and other mammals throughout the world. A highly sensitive and species-specific PCR-RFLP technique was utilised to detect the prevalence of A. caninum in cats in Guangzhou, southern China. Of the 102 fecal samples examined, the prevalence of A. caninum in cats was 95.1% and 83.3% using PCR-RFLP and microscopy, respectively. Among them, the prevalence of single hookworm infection with A. caninum was 54.90%, while mixed infections with both A. caninum and A. ceylanicum were 40.20%. Comparative analysis of three complete ITS sequences obtained from cat-derived A. caninum showed the same length (738 bp) as that of dog-derived A. caninum. However, the sequence variation range was 98.6%-100%, where only one cat isolate (M63) showed 100% sequence similarity in comparison with two dog-derived A. caninum isolates (AM850106, EU159416) in the same studied area. The phylogenetic tree revealed A. caninum derived from both cats and dogs in single cluster. Results suggest that cats could be the main host of A. caninum in China, which may cause cross-infection between dogs and cats in the same area.