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1.
Free Radic Biol Med ; 213: 470-487, 2024 03.
Artículo en Inglés | MEDLINE | ID: mdl-38301978

RESUMEN

The NTHL1 and NEIL1-3 DNA glycosylases are major enzymes in the removal of oxidative DNA base lesions, via the base excision repair (BER) pathway. It is expected that lack of these DNA glycosylases activities would render cells vulnerable to oxidative stress, promoting cell death. Intriguingly, we found that single, double, triple, and quadruple DNA glycosylase knockout HAP1 cells are, however, more resistant to oxidative stress caused by genotoxic agents than wild type cells. Furthermore, glutathione depletion in NEIL deficient cells further enhances resistance to cell death induced via apoptosis and ferroptosis. Finally, we observed higher basal level of glutathione and differential expression of NRF2-regulated genes associated with glutathione homeostasis in the NEIL triple KO cells. We propose that lack of NEIL DNA glycosylases causes aberrant transcription and subsequent errors in protein synthesis. This leads to increased endoplasmic reticulum stress and proteotoxic stress. To counteract the elevated intracellular stress, an adaptive response mediated by increased glutathione basal levels, rises in these cells. This study reveals an unforeseen role of NEIL glycosylases in regulation of resistance to oxidative stress, suggesting that modulation of NEIL glycosylase activities is a potential approach to improve the efficacy of e.g. anti-inflammatory therapies.


Asunto(s)
ADN Glicosilasas , Reparación del ADN , Reparación del ADN/genética , ADN Glicosilasas/genética , ADN Glicosilasas/metabolismo , Estrés Oxidativo/genética , Daño del ADN/genética , Apoptosis/genética
2.
Front Oncol ; 13: 1334112, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-38304034

RESUMEN

Background: Bladder cancer (BLCA) is a common and deadly disease that results in a reduced quality of life for the patients and a significant economic burden on society. A better understanding of tumorigenesis is needed to improve clinical outcomes. Recent evidence places the RNA modification m1A and its regulatory proteins TRMT6/TRMT61A and ALKBH3 in BLCA pathogenesis. Methods: TRMT6/TRMT61A, ALKBH1, and ALKBH3 expression was examined in human BLCA cell lines and a normal urinary tract epithelium cell line through qRT-PCR and western blot analysis. Prestoblue Cell Viability Reagent, wound-healing assay, and live-cell imaging-based cell displacement analysis, were conducted to assess proliferation, migration, and displacement of this BLCA cell line panel. Cell survival was assessed after inducing cellular stress and activating the unfolded protein response (UPR) with tunicamycin. Moreover, siRNA-mediated gene silencing in two BLCA cell lines (5637 and HT1197) was conducted to investigate the biological roles of TRMT6/TRMT61A. Results: Heterogeneous morphology, proliferation, displacement, tunicamycin sensitivity, and expression levels of m1A regulators were observed among the panel of cell lines examined. In general, TRMT61A expression was increased in BLCA cell lines when compared to SV-HUC-1. Depletion of TRMT6/TRMT61A reduced proliferation capacity in both 5637 and HT1197 cell lines. The average cell displacement of 5637 was also reduced upon TRMT6/TRMT61A depletion. Interestingly, TRMT6/TRMT61A depletion decreased mRNA expression of targets associated with the ATF6-branch of the UPR in 5637 but not in HT1197. Moreover, cell survival after induction of cellular stress was compromised after TRMT6/TRMT61A knockdown in 5637 but not in HT1197 cells. Conclusion: The findings suggest that TRMT6/TRMT61A plays an oncogenic role in BLCA and is involved in desensitizing BLCA cells against cellular stress. Further investigation into the regulation of TRMT6/TRMT61A expression and its impact on cellular stress tolerance may provide insights for future BLCA treatment.

3.
Commun Biol ; 4(1): 1354, 2021 12 02.
Artículo en Inglés | MEDLINE | ID: mdl-34857879

RESUMEN

Oxidative DNA damage in the brain has been implicated in neurodegeneration and cognitive decline. DNA glycosylases initiate base excision repair (BER), the main pathway for oxidative DNA base lesion repair. NEIL1 and NEIL3 DNA glycosylases affect cognition in mice, while the role of NEIL2 remains unclear. Here, we investigate the impact of NEIL2 and its potential overlap with NEIL1 on behavior in knockout mouse models. Neil1-/-Neil2-/- mice display hyperactivity, reduced anxiety and improved learning. Hippocampal oxidative DNA base lesion levels are comparable between genotypes and no mutator phenotype is found. Thus, impaired canonical repair is not likely to explain the altered behavior. Electrophysiology suggests reduced axonal activation in the hippocampal CA1 region in Neil1-/-Neil2-/- mice and lack of NEIL1 and NEIL2 causes dysregulation of genes in CA1 relevant for synaptic function. We postulate a cooperative function of NEIL1 and NEIL2 in genome regulation, beyond canonical BER, modulating behavior in mice.


Asunto(s)
Ansiedad/genética , ADN Glicosilasas/genética , Aprendizaje , Ratones/psicología , Animales , ADN Glicosilasas/metabolismo , Regulación de la Expresión Génica , Hipocampo/fisiología , Masculino , Ratones/genética , Ratones Noqueados , Estrés Oxidativo/fisiología
4.
Int J Mol Sci ; 22(23)2021 Nov 29.
Artículo en Inglés | MEDLINE | ID: mdl-34884729

RESUMEN

The human brain requires a high rate of oxygen consumption to perform intense metabolic activities, accounting for 20% of total body oxygen consumption. This high oxygen uptake results in the generation of free radicals, including reactive oxygen species (ROS), which, at physiological levels, are beneficial to the proper functioning of fundamental cellular processes. At supraphysiological levels, however, ROS and associated lesions cause detrimental effects in brain cells, commonly observed in several neurodegenerative disorders. In this review, we focus on the impact of oxidative DNA base lesions and the role of DNA glycosylase enzymes repairing these lesions on brain function and disease. Furthermore, we discuss the role of DNA base oxidation as an epigenetic mechanism involved in brain diseases, as well as potential roles of DNA glycosylases in different epigenetic contexts. We provide a detailed overview of the impact of DNA glycosylases on brain metabolism, cognition, inflammation, tissue loss and regeneration, and age-related neurodegenerative diseases based on evidence collected from animal and human models lacking these enzymes, as well as post-mortem studies on patients with neurological disorders.


Asunto(s)
ADN Glicosilasas/metabolismo , Reparación del ADN , Enfermedades Neurodegenerativas/enzimología , Estrés Oxidativo , Animales , Encéfalo/fisiología , Lesiones Encefálicas/enzimología , Epigénesis Genética , Humanos , Regeneración
5.
Syst Biol ; 70(6): 1295-1301, 2021 10 13.
Artículo en Inglés | MEDLINE | ID: mdl-33970279

RESUMEN

The Open Tree of Life project constructs a comprehensive, dynamic, and digitally available tree of life by synthesizing published phylogenetic trees along with taxonomic data. Open Tree of Life provides web-service application programming interfaces (APIs) to make the tree estimate, unified taxonomy, and input phylogenetic data available to anyone. Here, we describe the Python package opentree, which provides a user friendly Python wrapper for these APIs and a set of scripts and tutorials for straightforward downstream data analyses. We demonstrate the utility of these tools by generating an estimate of the phylogenetic relationships of all bird families, and by capturing a phylogenetic estimate for all taxa observed at the University of California Merced Vernal Pools and Grassland Reserve.[Evolution; open science; phylogenetics; Python; taxonomy.].


Asunto(s)
Análisis de Datos , Programas Informáticos , Humanos , Filogenia
6.
Cell Rep ; 30(12): 4165-4178.e7, 2020 03 24.
Artículo en Inglés | MEDLINE | ID: mdl-32209476

RESUMEN

Oxidation resistance gene 1 (OXR1) protects cells against oxidative stress. We find that male mice with brain-specific isoform A knockout (Oxr1A-/-) develop fatty liver. RNA sequencing of male Oxr1A-/- liver indicates decreased growth hormone (GH) signaling, which is known to affect liver metabolism. Indeed, Gh expression is reduced in male mice Oxr1A-/- pituitary gland and in rat Oxr1A-/- pituitary adenoma cell-line GH3. Oxr1A-/- male mice show reduced fasting-blood GH levels. Pull-down and proximity ligation assays reveal that OXR1A is associated with arginine methyl transferase PRMT5. OXR1A-depleted GH3 cells show reduced symmetrical dimethylation of histone H3 arginine 2 (H3R2me2s), a product of PRMT5 catalyzed methylation, and chromatin immunoprecipitation (ChIP) of H3R2me2s shows reduced Gh promoter enrichment. Finally, we demonstrate with purified proteins that OXR1A stimulates PRMT5/MEP50-catalyzed H3R2me2s. Our data suggest that OXR1A is a coactivator of PRMT5, regulating histone arginine methylation and thereby GH production within the pituitary gland.


Asunto(s)
Arginina/metabolismo , Histonas/metabolismo , Proteínas Mitocondriales/metabolismo , Proteína-Arginina N-Metiltransferasas/metabolismo , Animales , Encéfalo/metabolismo , Línea Celular , Hígado Graso/genética , Hígado Graso/patología , Femenino , Regulación de la Expresión Génica , Hormona del Crecimiento/sangre , Hormona del Crecimiento/metabolismo , Hormonas/metabolismo , Inmunidad/genética , Hígado/metabolismo , Hígado/patología , Masculino , Metilación , Ratones Endogámicos C57BL , Ratones Noqueados , Proteínas Mitocondriales/química , Proteínas Mitocondriales/deficiencia , Especificidad de Órganos , Hipófisis/metabolismo , Regiones Promotoras Genéticas/genética , Unión Proteica , Dominios Proteicos , Ratas , Receptores de Somatotropina/metabolismo , Factor de Transcripción STAT5/metabolismo , Relación Estructura-Actividad , Transcriptoma/genética
7.
Sci Rep ; 7(1): 4384, 2017 06 29.
Artículo en Inglés | MEDLINE | ID: mdl-28663564

RESUMEN

Base excision repair (BER) is a major pathway for removal of DNA base lesions and maintenance of genomic stability, which is essential in cancer prevention. DNA glycosylases recognize and remove specific lesions in the first step of BER. The existence of a number of these enzymes with overlapping substrate specificities has been thought to be the reason why single knock-out models of individual DNA glycosylases are not cancer prone. In this work we have characterized DNA glycosylases NEIL1 and NEIL2 (Neil1 -/- /Neil2 -/-) double and NEIL1, NEIL2 and NEIL3 (Neil1 -/- /Neil2 -/- /Neil3 -/-) triple knock-out mouse models. Unexpectedly, our results show that these mice are not prone to cancer and have no elevated mutation frequencies under normal physiological conditions. Moreover, telomere length is not affected and there was no accumulation of oxidative DNA damage compared to wild-type mice. These results strengthen the hypothesis that the NEIL enzymes are not simply back-up enzymes for each other but enzymes that have distinct functions beyond canonical repair.


Asunto(s)
ADN Glicosilasas/deficiencia , Predisposición Genética a la Enfermedad , Tasa de Mutación , Mutación , Neoplasias/genética , Animales , Línea Celular , Modelos Animales de Enfermedad , Estudios de Asociación Genética , Sitios Genéticos , Peróxido de Hidrógeno/farmacología , Ratones , Ratones Noqueados , Familia de Multigenes , Neoplasias/metabolismo , Neoplasias/patología , Dicromato de Potasio/farmacología
8.
Cell Rep ; 18(1): 82-92, 2017 01 03.
Artículo en Inglés | MEDLINE | ID: mdl-28052262

RESUMEN

Myocardial infarction (MI) triggers a reparative response involving fibroblast proliferation and differentiation driving extracellular matrix modulation necessary to form a stabilizing scar. Recently, it was shown that a genetic variant of the base excision repair enzyme NEIL3 was associated with increased risk of MI in humans. Here, we report elevated myocardial NEIL3 expression in heart failure patients and marked myocardial upregulation of Neil3 after MI in mice, especially in a fibroblast-enriched cell fraction. Neil3-/- mice show increased mortality after MI caused by myocardial rupture. Genome-wide analysis of 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) reveals changes in the cardiac epigenome, including in genes related to the post-MI transcriptional response. Differentially methylated genes are enriched in pathways related to proliferation and myofibroblast differentiation. Accordingly, Neil3-/- ruptured hearts show increased proliferation of fibroblasts and myofibroblasts. We propose that NEIL3-dependent modulation of DNA methylation regulates cardiac fibroblast proliferation and thereby affects extracellular matrix modulation after MI.


Asunto(s)
Endodesoxirribonucleasas/metabolismo , Fibroblastos/metabolismo , Fibroblastos/patología , Miocardio/metabolismo , Miocardio/patología , N-Glicosil Hidrolasas/metabolismo , 5-Metilcitosina/análogos & derivados , 5-Metilcitosina/metabolismo , Proliferación Celular , Colágeno/metabolismo , Enfermedades del Tejido Conjuntivo/genética , Enfermedades del Tejido Conjuntivo/patología , Daño del ADN , Metilación de ADN/genética , Endodesoxirribonucleasas/deficiencia , Perfilación de la Expresión Génica , Regulación de la Expresión Génica , Insuficiencia Cardíaca/genética , Insuficiencia Cardíaca/patología , Corazón Auxiliar , Humanos , Leucocitos/patología , Metaloproteinasa 2 de la Matriz/metabolismo , Infarto del Miocardio/patología , Miofibroblastos/metabolismo , Miofibroblastos/patología , Oxidación-Reducción , Fenotipo , Análisis de Secuencia de ARN , Análisis de Supervivencia , Factores de Tiempo
9.
Sci Rep ; 6: 28337, 2016 06 22.
Artículo en Inglés | MEDLINE | ID: mdl-27328939

RESUMEN

Increasing evidence suggests that oxidative DNA damage accumulates in atherosclerosis. Recently, we showed that a genetic variant in the human DNA repair enzyme NEIL3 was associated with increased risk of myocardial infarction. Here, we explored the role of Neil3/NEIL3 in atherogenesis by both clinical and experimental approaches. Human carotid plaques revealed increased NEIL3 mRNA expression which significantly correlated with mRNA levels of the macrophage marker CD68. Apoe(-/-)Neil3(-/-) mice on high-fat diet showed accelerated plaque formation as compared to Apoe(-/-) mice, reflecting an atherogenic lipid profile, increased hepatic triglyceride levels and attenuated macrophage cholesterol efflux capacity. Apoe(-/-)Neil3(-/-) mice showed marked alterations in several pathways affecting hepatic lipid metabolism, but no genotypic alterations in genome integrity or genome-wide accumulation of oxidative DNA damage. These results suggest a novel role for the DNA glycosylase Neil3 in atherogenesis in balancing lipid metabolism and macrophage function, potentially independently of genome-wide canonical base excision repair of oxidative DNA damage.


Asunto(s)
Aterosclerosis/prevención & control , Reparación del ADN , Endodesoxirribonucleasas/genética , Metabolismo de los Lípidos , N-Glicosil Hidrolasas/genética , Animales , Antígenos CD/genética , Antígenos de Diferenciación Mielomonocítica/genética , Aterosclerosis/genética , Aterosclerosis/metabolismo , Daño del ADN , Modelos Animales de Enfermedad , Endodesoxirribonucleasas/metabolismo , Macrófagos/metabolismo , Ratones , Ratones Noqueados para ApoE , N-Glicosil Hidrolasas/metabolismo , Estrés Oxidativo
10.
Rev. colomb. cir ; 30(3): 246-252, jul.-set. 2015. ilus
Artículo en Español | LILACS, COLNAL | ID: lil-765592

RESUMEN

El carcinoma adenoescamoso primario de la vesícula biliar es una variante poco conocida e infrecuente de este tipo de neoplasias, cuya etiología y comportamiento siguen constituyendo un enigma. Se trata de una paciente de 45 años de edad con un carcinoma adenoescamoso primario de vesícula biliar; se presenta este caso por ser un reto diagnóstico debido a lo poco que se conoce sobre esta entidad, la cual es considerada más agresiva y de peor pronóstico que el adenocarcinoma en su presentación clásica.


Adenosquamous carcinoma of the gallbladder is a little-known and infrequent variant of carcinoma, and its etiology and behavior are not completely known. In this review we present a patient of 45 years with a primary adenosquamous carcinoma of the gallbladder, a case that is reported for being a diagnostic challenge for an uncommon entity, which is considered more aggressive and of worse prognosis than the adenocarcinoma in its classical presentation.


Asunto(s)
Humanos , Vesícula Biliar , Carcinoma , Carcinoma Adenoescamoso , Neoplasias de la Vesícula Biliar
11.
DNA Repair (Amst) ; 28: 21-7, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25703835

RESUMEN

BACKGROUND: Enhanced generation of reactive oxygen species and increased oxidative-induced DNA damage have been identified as possible contributors to atherosclerosis. The base excision repair (BER) pathway is the principal mechanism by which mammalian cells repair oxidative DNA damage. BER deficiency can potentially accelerate atherogenesis. METHODS: We evaluated the association of Single Nucleotide Polymorphisms (SNPs) in genes encoding four different BER proteins (NEIL3, OGG1, APEX1 and XRCC1) with the incidence of myocardial infarction in a nested case-control study among participants of the second survey of the HUNT Study. The study population included 1624 cases and 4087 age- and sex-matched controls. RESULTS: For the NEIL3 SNP rs12645561, the TT genotype was associated with increased risk of MI (OR 1.47, 95% CI 1.02-2.12, p uncorrected for multiple comparisons = 0.04) both in the genotypic test (compared to the CC genotype) and in the recessive genetic model (compared to the CC and CT genotypes combined). For the other two NEIL3 SNPs (rs10013040 and rs1395479) and for the SNPs of OGG1 (rs1052133), APEX1 (rs1878703) and XRCC1 (rs25489) we observed no association with risk of myocardial infarction. CONCLUSION: We found that the NEIL3 rs12645561 SNP TT genotype was associated with increased risk of myocardial infarction. If confirmed in other studies, this association may suggest a possible role of attenuated DNA repair, and NEIL3 in particular, in atherogenesis.


Asunto(s)
Infarto del Miocardio/genética , N-Glicosil Hidrolasas/genética , Polimorfismo de Nucleótido Simple , Anciano , Anciano de 80 o más Años , Estudios de Casos y Controles , ADN Glicosilasas/genética , ADN-(Sitio Apurínico o Apirimidínico) Liasa/genética , Proteínas de Unión al ADN/genética , Femenino , Humanos , Masculino , Persona de Mediana Edad , Proteína 1 de Reparación por Escisión del Grupo de Complementación Cruzada de las Lesiones por Rayos X
12.
Free Radic Biol Med ; 77: 41-8, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25236744

RESUMEN

The oxidation resistance gene 1 (OXR1) prevents oxidative stress-induced cell death by an unknown pathway. Here, depletion of human OXR1 (hOXR1) sensitized several human cell lines to hydrogen peroxide-induced oxidative stress, reduced mtDNA integrity, and increased apoptosis. In contrast, depletion of hOXR1 in cells lacking mtDNA showed no significant change in ROS or viability, suggesting that OXR1 prevents intracellular hydrogen peroxide-induced increase in oxidative stress levels to avoid a vicious cycle of increased oxidative mtDNA damage and ROS formation. Furthermore, expression of p21 and the antioxidant genes GPX2 and HO-1 was reduced in hOXR1-depleted cells. In sum, these data reveal that human OXR1 upregulates the expression of antioxidant genes via the p21 signaling pathway to suppress hydrogen peroxide-induced oxidative stress and maintain mtDNA integrity.


Asunto(s)
Inhibidor p21 de las Quinasas Dependientes de la Ciclina/metabolismo , ADN Mitocondrial/genética , Proteínas/fisiología , Antioxidantes/metabolismo , Apoptosis , Dosificación de Gen , Expresión Génica , Células HEK293 , Células HeLa , Humanos , Peróxido de Hidrógeno/metabolismo , Proteínas Mitocondriales , Estrés Oxidativo , Transducción de Señal , Regulación hacia Arriba
13.
DNA Repair (Amst) ; 12(12): 1159-64, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23755964

RESUMEN

Base excision repair is the major pathway for removal of oxidative DNA base damage. This pathway is initiated by DNA glycosylases, which recognize and excise damaged bases from DNA. In this work, we have purified the glycosylase domain (GD) of human DNA glycosylase NEIL3. The substrate specificity has been characterized and we have elucidated the catalytic mechanisms. GD NEIL3 excised the hydantoin lesions spiroiminodihydantoin (Sp) and guanidinohydantoin (Gh) in single-stranded (ss) and double-stranded (ds) DNA efficiently. NEIL3 also removed 5-hydroxy-2'-deoxycytidine (5OHC) and 5-hydroxy-2'-deoxyuridine (5OHU) in ssDNA, but less efficiently than hydantoins. Unlike NEIL1 and NEIL2, which possess a ß,δ-elimination activity, NEIL3 mainly incised damaged DNA by ß-elimination. Further, the base excision and strand incision activities of NEIL3 exhibited a non-concerted action, indicating that NEIL3 mainly operate as a monofunctional DNA glycosylase. The site-specific NEIL3 mutant V2P, however, showed a concerted action, suggesting that the N-terminal amino group in Val2 is critical for the monofunctional modus. Finally, we demonstrated that residue Lys81 is essential for catalysis.


Asunto(s)
ADN Glicosilasas/metabolismo , ADN/metabolismo , Guanidinas/metabolismo , Guanosina/análogos & derivados , Hidantoínas/metabolismo , N-Glicosil Hidrolasas/metabolismo , Compuestos de Espiro/metabolismo , Dominio Catalítico , Roturas del ADN de Doble Cadena , Roturas del ADN de Cadena Simple , ADN Glicosilasas/química , Reparación del ADN , Guanosina/metabolismo , Humanos , Lisina/genética , Mutación , N-Glicosil Hidrolasas/química , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato
14.
Biochim Biophys Acta ; 1833(5): 1157-64, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23305905

RESUMEN

7,8-Dihydro-8-oxoguanine (8-oxoG) is one of the most common oxidative base lesions in normal tissues induced by a variety of endogenous and exogenous agents. Hydantoins are products of 8-oxoG oxidation and as 8-oxoG, they have been shown to be mutagenic lesions. Oxidative DNA damage has been implicated in the etiology of various age-associated pathologies, such as cancer, cardiovascular diseases, arthritis, and several neurodegenerative diseases. The mammalian endonuclease VIII-like 3 (Neil3) is one of the four DNA glycosylases found to recognize and remove hydantoins in the first step of base excision repair (BER) pathway. We have generated mice lacking Neil3 and by using total cell extracts we demonstrate that Neil3 is the main DNA glycosylase that incises hydantoins in single stranded DNA in tissues. Using the neurosphere culture system as a model to study neural stem/progenitor (NSPC) cells we found that lack of Neil3 impaired self renewal but did not affect differentiation capacity. Proliferation was also reduced in mouse embryonic fibroblasts (MEFs) derived from Neil3(-/-) embryos and these cells were sensitive to both the oxidative toxicant paraquat and interstrand cross-link (ICL)-inducing agent cisplatin. Our data support the involvement of Neil3 in removal of replication blocks in proliferating cells.


Asunto(s)
Daño del ADN , Hidantoínas/metabolismo , N-Glicosil Hidrolasas , Animales , Proliferación Celular/efectos de los fármacos , Cisplatino/administración & dosificación , Daño del ADN/efectos de los fármacos , Daño del ADN/genética , Reparación del ADN/genética , Replicación del ADN/genética , ADN de Cadena Simple/metabolismo , Fibroblastos/citología , Fibroblastos/efectos de los fármacos , Guanina/análogos & derivados , Guanina/química , Guanina/metabolismo , Hidantoínas/química , Ratones , N-Glicosil Hidrolasas/genética , N-Glicosil Hidrolasas/metabolismo
15.
Cell Rep ; 2(3): 503-10, 2012 Sep 27.
Artículo en Inglés | MEDLINE | ID: mdl-22959434

RESUMEN

Accumulation of oxidative DNA damage has been proposed as a potential cause of age-related cognitive decline. The major pathway for removal of oxidative DNA base lesions is base excision repair, which is initiated by DNA glycosylases. In mice, Neil3 is the main DNA glycosylase for repair of hydantoin lesions in single-stranded DNA of neural stem/progenitor cells, promoting neurogenesis. Adult neurogenesis is crucial for maintenance of hippocampus-dependent functions involved in behavior. Herein, behavioral studies reveal learning and memory deficits and reduced anxiety-like behavior in Neil3(-/-) mice. Neural stem/progenitor cells from aged Neil3(-/-) mice show impaired proliferative capacity and reduced DNA repair activity. Furthermore, hippocampal neurons in Neil3(-/-) mice display synaptic irregularities. It appears that Neil3-dependent repair of oxidative DNA damage in neural stem/progenitor cells is required for maintenance of adult neurogenesis to counteract the age-associated deterioration of cognitive performance.


Asunto(s)
Reparación del ADN/fisiología , Endodesoxirribonucleasas/metabolismo , Hipocampo/metabolismo , Proteínas del Tejido Nervioso/metabolismo , Células-Madre Neurales/metabolismo , Neurogénesis/fisiología , Animales , Ansiedad/genética , Ansiedad/metabolismo , Conducta Animal/fisiología , Cognición/fisiología , Daño del ADN , Endodesoxirribonucleasas/genética , Hipocampo/citología , Ratones , Ratones Noqueados , Proteínas del Tejido Nervioso/genética , Células-Madre Neurales/citología , Oxidación-Reducción
16.
DNA Repair (Amst) ; 11(9): 766-73, 2012 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-22858590

RESUMEN

Base excision repair of oxidized DNA in human cells is initiated by several DNA glycosylases with overlapping substrate specificity. The human endonuclease VIII homologue NEIL1 removes a broad spectrum of oxidized pyrimidine and purine lesions. In this study of NEIL1 we have identified several key residues, located in three loops lining the DNA binding cavity, important for lesion recognition and DNA glycosylase/AP lyase activity for oxidized bases in double-stranded and single-stranded DNA. Single-turnover kinetics of NEIL1 revealed that removal of 5-hydroxycytosine (5-OHC) and 5-hydroxyuracil (5-OHU) is ∼25 and ∼10-fold faster in duplex DNA compared to single-stranded DNA, respectively, and also faster than removal of dihydrothymine (DHT) and dihydrouracil (DHU), both in double-stranded and single-stranded DNA. NEIL1 excised 8-oxoguanine (8-oxoG) only from double-stranded DNA and analysis of site-specific mutants revealed that Met81, Arg119 and Phe120 are essential for removal of 8-oxoG. Further, several arginine and histidine residues located in the loop connecting the two ß-strands forming the zincless finger motif and projecting into the DNA major groove, were shown to be imperative for lesion processing for both single- and double-stranded substrates. Trapping experiments of active site mutants revealed that the N-terminal Pro2 and Lys54 can alternate to form a Schiff-base complex between the protein and DNA. Hence, both Pro2 and Lys54 are involved in the AP lyase activity. While wildtype NEIL1 activity almost exclusively generated a δ-elimination product when processing single-stranded substrates, substitution of Lys54 changed this in favor of a ß-elimination product. These results suggest that Pro2 and Lys54 are both essential for the concerted action of the ß,δ-elimination in NEIL1.


Asunto(s)
ADN Glicosilasas/química , Reparación del ADN , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Dominio Catalítico/genética , Aductos de ADN , ADN Glicosilasas/genética , ADN de Cadena Simple , Humanos , Datos de Secuencia Molecular , Bases de Schiff
17.
PLoS One ; 7(3): e34119, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22479537

RESUMEN

BACKGROUND: Human cytomegalovirus (HCMV) uracil DNA glycosylase, UL114, is required for efficient viral DNA replication. Presumably, UL114 functions as a structural partner to other factors of the DNA-replication machinery and not as a DNA repair protein. UL114 binds UL44 (HCMV processivity factor) and UL54 (HCMV-DNA-polymerase). In the present study we have searched for cellular partners of UL114. METHODOLOGY/PRINCIPAL FINDINGS: In a yeast two-hybrid screen SMARCB1, a factor of the SWI/SNF chromatin remodeling complex, was found to be an interacting partner of UL114. This interaction was confirmed in vitro by co-immunoprecipitation and pull-down. Immunofluorescence microscopy revealed that SMARCB1 along with BRG-1, BAF170 and BAF155, which are the core SWI/SNF components required for efficient chromatin remodeling, were present in virus replication foci 24-48 hours post infection (hpi). Furthermore a direct interaction was also demonstrated for SMARCB1 and UL44. CONCLUSIONS/SIGNIFICANCE: The core SWI/SNF factors required for efficient chromatin remodeling are present in the HCMV replication foci throughout infection. The proteins UL44 and UL114 interact with SMARCB1 and may participate in the recruitment of the SWI/SNF complex to the chromatinized virus DNA. Thus, the presence of the SWI/SNF chromatin remodeling complex in replication foci and its association with UL114 and with UL44 might imply its involvement in different DNA transactions.


Asunto(s)
Cromatina/metabolismo , Proteínas Cromosómicas no Histona/metabolismo , Citomegalovirus/metabolismo , Proteínas de Unión al ADN/química , Proteínas de Unión al ADN/metabolismo , Factores de Transcripción/metabolismo , Uracil-ADN Glicosidasa/química , Proteínas Virales/química , Línea Celular , Núcleo Celular/metabolismo , Cromatina/química , Ensamble y Desensamble de Cromatina , Proteínas Cromosómicas no Histona/química , Fibroblastos/metabolismo , Perfilación de la Expresión Génica , Glutatión Transferasa/metabolismo , Humanos , Microscopía Fluorescente/métodos , Matriz Nuclear/metabolismo , Unión Proteica , Proteína SMARCB1 , Factores de Transcripción/química , Técnicas del Sistema de Dos Híbridos , Uracil-ADN Glicosidasa/metabolismo , Proteínas Virales/metabolismo
18.
DNA Repair (Amst) ; 11(4): 401-9, 2012 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-22365498

RESUMEN

Base excision repair (BER) is believed to be the predominant pathway for the repair of oxidative DNA damage. BER is initiated by lesion-specific DNA glycosylases that recognize and remove the damaged base. NEIL1, NEIL2 and NEIL3 are three mammalian members of the Fpg/Nei DNA glycosylase family with similar enzymatic properties. In this study we showed that both the transcription and protein levels of hNEIL3 fluctuated during the cell cycle. Based on predicted promoter elements of cell cycle-regulated genes and microarray data from various reports, we suggest that hNEIL3 repression in quiescent cells might be mediated by the DREAM (DP1, RB p130, E2F4 and MuvB core complex) complex. Release from G0 by mitogenic stimulation showed an induction of hNEIL3 in early S phase under the control of the Ras dependent ERK-MAP kinase pathway. In contrast, the total expression of hNEIL1 was downregulated upon release from quiescence while the expression of hNEIL2 was cell cycle independent. Notably, hNEIL3 showed a similar regulation pattern as the replication protein hFEN1 supporting a function of hNEIL3 in replication associated repair. Thus, it appears that specialized functions of the NEILs are ensured by their expression patterns.


Asunto(s)
Ciclo Celular , Quinasas MAP Reguladas por Señal Extracelular/metabolismo , Regulación de la Expresión Génica , Sistema de Señalización de MAP Quinasas , N-Glicosil Hidrolasas/genética , N-Glicosil Hidrolasas/metabolismo , Proteínas ras/metabolismo , Línea Celular , ADN Glicosilasas/genética , ADN Glicosilasas/metabolismo , Humanos , Regiones Promotoras Genéticas/genética , Proteína de Retinoblastoma/metabolismo , Transcripción Genética
19.
Proc Natl Acad Sci U S A ; 108(46): 18802-7, 2011 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-22065741

RESUMEN

Neural stem/progenitor cell proliferation and differentiation are required to replace damaged neurons and regain brain function after hypoxic-ischemic events. DNA base lesions accumulating during hypoxic-ischemic stress are removed by DNA glycosylases in the base-excision repair pathway to prevent cytotoxicity and mutagenesis. Expression of the DNA glycosylase endonuclease VIII-like 3 (Neil3) is confined to regenerative subregions in the embryonic and perinatal brains. Here we show profound neuropathology in Neil3-knockout mice characterized by a reduced number of microglia and loss of proliferating neuronal progenitors in the striatum after hypoxia-ischemia. In vitro expansion of Neil3-deficient neural stem/progenitor cells revealed an inability to augment neurogenesis and a reduced capacity to repair for oxidative base lesions in single-stranded DNA. We propose that Neil3 exercises a highly specialized function through accurate molecular repair of DNA in rapidly proliferating cells.


Asunto(s)
Endodesoxirribonucleasas/genética , Hipoxia/genética , Isquemia/genética , Animales , Diferenciación Celular , Proliferación Celular , Daño del ADN , ADN de Cadena Simple , Endodesoxirribonucleasas/metabolismo , Hidantoínas/metabolismo , Ratones , Ratones Noqueados , Mitosis , Células-Madre Neurales/citología , Neurogénesis , Células Madre/citología
20.
Mutat Res ; 666(1-2): 32-8, 2009 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-19481677

RESUMEN

Base excision repair (BER) is the major pathway to counteract the genotoxic effect of endogenous DNA damaging agents. The present study investigated the enzymatic activities and gene transcription of DNA glycosylases initiating BER in an experimental heart failure (HF) model. Rats were subjected to myocardial infarction or sham-operated. Twenty-eight days after surgical intervention cell-free protein extracts, total RNA and genomic DNA were isolated to analyze DNA glycosylase and AP-endonuclease activities, transcript levels of DNA glycosylases and accumulation of oxidative DNA damage. The capacity to remove major oxidation products (e.g., formamidopyrimidine and 5-hydroxycytosine) was significantly increased in the border zone of infarcted area, while the capacity to remove the highly mutagenic 8-oxoguanine residue was enhanced both in non-infarcted and infarcted areas of left ventricle (LV). DNA glycosylase activities towards 3-methyladenine and uracil were up-regulated in infarcted and non-infarcted areas of LV, indicating that generation of alkylated and deaminated base lesions on DNA increase during HF. Finally, we found no difference in accumulation of oxidative DNA damage in myocardial tissue between rats with post-myocardial infarction and sham-operated rats. This up-regulation of activities, initiating the BER pathway, could play an important role during HF by counteracting the effect of genotoxic stress, structural damage of tissue and myocardial remodeling.


Asunto(s)
Reparación del ADN , ADN Mitocondrial/metabolismo , Guanina/análogos & derivados , Insuficiencia Cardíaca/genética , Miocardio/metabolismo , Animales , Daño del ADN , ADN Glicosilasas/metabolismo , Regulación Enzimológica de la Expresión Génica , Guanina/metabolismo , Masculino , Estrés Oxidativo , Ratas , Ratas Wistar , Regulación hacia Arriba
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