Taxonomical and functional analyses of epifaunal polychaetes associated with Mussismilia spp.: the effects of coral growth morphology.

Background: The increasing habitat heterogeneity and complexity shows positive effects over different communities, leading to environmental diversity, access to resources and reducing the effectiveness of predation. In the present study we evaluate the structural and functional patterns of polychaete assemblages of three Mussismilia species with different coral morphology. Mussismilia hispida has a massive growth pattern; M. braziliensis also is a massive coral but forms a crevice in the corallum base; and M. harttii has a meandroid pattern. Methods: Ten individuals of the three Mussismilia species were sampled in two reefs in the Todos-os-Santos Bay, and we analyzed the differences in richness and abundance of polychaete species and the functional diversity metrics: Rao's quadratic entropy, functional dispersion, functional evenness, number of functional groups and functional richness, among Mussismilia species. Results: Two-way ANOVA with permutations showed significant differences for polychaete abundances and richness among Mussismilia species (higher values for M. harttii), but no differences were recorded when compared between the two coral reef areas studied. There was no statistical difference among coral species or between reefs in relation to the functional diversity components influenced by abundance, such as Rao quadratic entropy, functional dispersion, and functional evenness. Some individual polychaete functional traits presented differences among Mussismilia species, and that also helped us to build a picture about the effect of different growth structures over functional aspects of polychaete assemblages. Thus, the taxonomical approach, the analysis of individual functional traits and the functional diversity metrics are fundamental tools to characterize the assemblage of organisms associated with corals.

Gene Flow and Genetic Structure Reveal Reduced Diversity between Generations of a Tropical Tree, Manilkara multifida Penn., in Atlantic Forest Fragments.

The Atlantic Forest remnants in southern Bahia, Brazil, contain large tree species that have suffered disturbances in recent decades. Anthropogenic activities have led to a decrease in the population of many tree species and a loss of alleles that can maintain the evolutionary fitness of their populations. This study assessed patterns of genetic diversity, spatial genetic structure, and genetic structure among Manilkara multifida Penn. populations, comparing the genetic parameters of adult and juvenile trees. In particular, we collected leaves from adults and juveniles of M. multifida in two protected areas, the Veracel Station (EVC) and the Una Biological Reserve (UBR), located in threatened Atlantic Forest fragments. We observed a substantial decay in genetic variability between generations in both areas i.e., adults' HO values were higher (EVC = 0.720, UBR = 0.736) than juveniles' (EVC = 0.463 and UBR = 0.560). Both juveniles and adults showed genetic structure between the two areas (θ = 0.017 for adults and θ = 0.109 for juveniles). Additionally, forest fragments indicated an unexpectedly short gene flow. Our results, therefore, highlight the pervasive effects of historical deforestation and other human disturbances on the genetic diversity of M. multifida populations within a key conservation region of the Atlantic Forest biodiversity hotspot.

Structure of marginal coral reef assemblages under different turbidity regime.

Sediment load can influence both the population distribution and structures of coral reef communities. We investigated whether coral assemblages on inshore and more turbid reefs differ from those on offshore reefs in the largest coral reefs of the Southwest Atlantic. We compared inshore and offshore reefs (with different turbidity climatologies) in terms of benthic and coral assemblage structures, abundances and individual sizes of coral populations and recruitment patterns. Unexpectedly, the inshore reefs showed higher coral cover and abundance, larger colonies and more recruits. This finding is related to the predominance of sediment-tolerant species on the turbid reefs. In contrast, only Mussismilia braziliensis (main builder of Abrolhos) showed better performance (greater coverage, larger diameter and more recruits) on offshore reefs, apparently behaving as a strong competitor in less turbid environments. These results reinforce the recent thinking of coral reef of turbid environments as resistant ecosystems and potential refuges considering the unnatural increase of sediment supply.

Biodiversity thresholds in invertebrate communities: The responses of dung beetle subgroups to forest loss.

Extinction thresholds have been predicted to be critical values of habitat loss in which an abrupt reduction in populations occurs through the interaction between reduced habitat and increased isolation in the landscape. In communities, extinction thresholds are referred to as 'biodiversity thresholds'. The biodiversity threshold values documented so far occur between 30% and 50% of habitat cover in landscapes. However, the assessment of biodiversity thresholds has mainly focused on vertebrate and plant communities. Here, we evaluated the occurrence of biodiversity thresholds in dung beetle communities by sampling ten 3,600 ha Atlantic Forest landscapes with forest cover ranging from 5% to 55%. We analysed the response patterns (abundance, gamma and mean alpha diversity) of community subgroups with different levels of forest dependency (forest species, generalist species, and open-area species) using model selection, comparing null, linear, bell-shaped and logistic models. The response of the community of forest species equally fits both linear and logistic models predicting a biodiversity threshold at 25% forest cover. Generalist species showed peak abundance at 20% forest cover although this result reflects a very poor generalist assembly. Open-area specialists did not respond to the amount of forest. The two most plausible models for forest species suggest two different biodiversity management options. Since the biodiversity threshold model represents a more dramatic scenario for the loss of biodiversity in Atlantic forest landscapes, we suggest, based on precautionary principle, that our results should strength guidelines that consider minimum values of forest cover in management strategies to avoid abrupt biodiversity loss and impacts on ecosystem services.

Do invasive corals alter coral reef processes? An empirical approach evaluating reef fish trophic interactions.

Understanding how invasive species affect key ecological interactions and ecosystem processes is imperative for the management of invasions. We evaluated the effects of invasive corals (Tubastraea spp.) on fish trophic interactions in an Atlantic coral reef. Remote underwater video cameras were used to examine fish foraging activity (bite rates and food preferences) on invasive cover levels. Using a model selection approach, we found that fish feeding rates declined with increased invasive cover. For Roving Herbivores (RH) and Sessile Invertivores (SI), an abrupt reduction of fish feeding rates corresponded with higher invasive cover, while feeding rates of Territorial Herbivores (TH) and Mobile Invertivores (MI) decreased linearly with cover increase. Additionally, some fish trophic groups, such as RH, SI and Omnivores (OM), had lower densities in reef sections with high invasive cover. These findings demonstrate that invasive corals negatively impact fish-benthic interactions, and could potentially alter existing trophic relationships in reef ecosystems.

Functional decay in tree community within tropical fragmented landscapes: Effects of landscape-scale forest cover.

As tropical rainforests are cleared, forest remnants are increasingly isolated within agricultural landscapes. Understanding how forest loss impacts on species diversity can, therefore, contribute to identifying the minimum amount of habitat required for biodiversity maintenance in human-modified landscapes. Here, we evaluate how the amount of forest cover, at the landscape scale, affects patterns of species richness, abundance, key functional traits and common taxonomic families of adult trees in twenty Brazilian Atlantic rainforest landscapes. We found that as forest cover decreases, both tree community richness and abundance decline, without exhibiting a threshold. At the family-level, species richness and abundance of the Myrtaceae and Sapotaceae were also negatively impacted by the percent forest remaining at the landscape scale. For functional traits, we found a reduction in shade-tolerant, animal-dispersed and small-seeded species following a decrease in the amount of forest retained in landscapes. These results suggest that the amount of forest in a landscape is driving non-random losses in phylogenetic and functional tree diversity in Brazil's remaining Atlantic rainforests. Our study highlights potential restraints on the conservation value of Atlantic rainforest remnants in deforested landscapes in the future.

Birds in Anthropogenic Landscapes: The Responses of Ecological Groups to Forest Loss in the Brazilian Atlantic Forest.

Habitat loss is the dominant threat to biodiversity and ecosystem functioning in terrestrial environments. In this study, we used an a priori classification of bird species based on their dependence on native forest habitats (forest-specialist and habitat generalists) and specific food resources (frugivores and insectivores) to evaluate their responses to forest cover reduction in landscapes in the Brazilian Atlantic Forest. From the patch-landscapes approach, we delimited 40 forest sites, and quantified the percentage of native forest within a 2 km radius around the center of each site (from 6 - 85%). At each site, we sampled birds using the point-count method. We used a null model, a generalized linear model and a four-parameter logistic model to evaluate the relationship between richness and abundance of the bird groups and the native forest amount. A piecewise model was then used to determine the threshold value for bird groups that showed nonlinear responses. The richness and abundance of the bird community as a whole were not affected by changes in forest cover in this region. However, a decrease in forest cover had a negative effect on diversity of forest-specialist, frugivorous and insectivorous birds, and a positive effect on generalist birds. The species richness and abundance of all ecological groups were nonlinearly related to forest reduction and showed similar threshold values, i.e., there were abrupt changes in individuals and species numbers when forest amount was less than approximately 50%. Forest sites within landscapes with forest cover that was less than 50% contained a different bird species composition than more extensively forested sites and had fewer forest-specialist species and higher beta-diversity. Our study demonstrated the pervasive effect of forest reduction on bird communities in one of the most important hotspots for bird conservation and shows that many vulnerable species require extensive forest cover to persist.

Natural humic substances effects on the life history traits of Latonopsis australis SARS (1888) (Cladocera--Crustacea).

Cultivation medium is one of the first aspects to be considered in zooplankton laboratory cultivation. The use of artificial media does not concern to reproduce natural conditions to the cultivations, which may be achieved by using natural organic compounds like humic substances (HS). This study aimed to evaluate the effects of a concentrate of dissolved organic carbon (DOC) from the Negro River (NR(1)) and an extraction of humic acids (HA) from humus produced by Eisenia andrei on the life history traits of laboratory-based Latonopsis australis SARS (1888). A cohort life table approach was used to provide information about the effectiveness of NR and HA as supplements for the artificial cultivation of L. australis. Additionally, we seek to observe a maximization of L. australis artificial cultivation fitness by expanding the range of HS concentrations. The first experiment demonstrated that the females of L. australis reared under NR10 (mgDOCL(-1)) may have experienced an acceleration of the population life cycle, as the females have proportionally reproduced more and lived shorter than controls. By contrast, the use of the HA did not improve life history traits considered. The expansion of the concentration range (5, 10, 20 and 50 mgDOCL(-1)) corroborated the patterns observed on the first assay. Results for the fitness estimates combined with shorter lifespans than controls demonstrated trade-offs between reproductive output and female longevity reared under NR conditions, with NR20 been suggested as the best L. australis cultivation medium. This response might be associated with hormone-like effects.

DNA barcoding in Atlantic Forest plants: What is the best marker for Sapotaceae species identification?

The Atlantic Forest is a phytogeographic domain with a high rate of endemism and large species diversity. The Sapotaceae is a botanical family for which species identification in the Atlantic Forest is difficult. An approach that facilitates species identification in the Sapotaceae is urgently needed because this family includes threatened species and valuable timber species. In this context, DNA barcoding could provide an important tool for identifying species in the Atlantic Forest. In this work, we evaluated four plant barcode markers (matK, rbcL, trnH-psbA and the nuclear ribosomal internal transcribed spacer region - ITS) in 80 samples from 26 species of Sapotaceae that occur in the Atlantic Forest. ITS yielded the highest average interspecific distance (0.122), followed by trnH-psbA (0.019), matK (0.008) and rbcL (0.002). For species discrimination, ITS provided the best results, followed by matK, trnH-psbA and rbcL. Furthermore, the combined analysis of two, three or four markers did not result in higher rates of discrimination than obtained with ITS alone. These results indicate that the ITS region is the best option for molecular identification of Sapotaceae species from the Atlantic Forest.

Differential responses of emergent intertidal coral reef fauna to a large-scale El-Niño southern oscillation event: sponge and coral resilience.

There is a paucity of information on the impacts of the 1997-8 El Niño event and subsequent climatic episodes on emergent intertidal coral reef assemblages. Given the environmental variability intertidal reefs experience, such reefs may potentially be more resilient to climatic events and provide important insights into the adaptation of reef fauna to future ocean warming. Here we report the results of a 17-year (1995-2011) biodiversity survey of four emergent coral reef ecosystems in Bahia, Brazil, to assess the impact of a major El Niño event on the reef fauna, and determine any subsequent recovery. The densities of two species of coral, Favia gravida and Siderastrea stellata, did not vary significantly across the survey period, indicating a high degree of tolerance to the El Niño associated stress. However, there were marked decreases in the diversity of other taxa. Molluscs, bryozoans and ascidians suffered severe declines in diversity and abundance and had not recovered to pre-El Niño levels by the end of the study. Echinoderms were reduced to a single species in 1999, Echinometra lucunter, although diversity levels had recovered by 2002. Sponge assemblages were not impacted by the 1997-8 event and their densities had increased by the study end. Multivariate analysis indicated that a stable invertebrate community had re-established on the reefs after the El Niño event, but it has a different overall composition to the pre-El Niño community. It is unclear if community recovery will continue given more time, but our study highlights that any increase in the frequency of large-scale climatic events to more than one a decade is likely to result in a persistent lower-diversity state. Our results also suggest some coral and sponge species are particularly resilient to the El Niño-associated stress and therefore represent suitable models to investigate temperature adaptation in reef organisms.