The Study of the Effect of Dimethylsulfoxide (or Diethylsulfoxide) on Quinine Sulfate-DNA Binding by UV-Vis and Steady-State Fluorescence Spectroscopies.

The effect of dimethylsulfoxide (DMSO) and diethylsulfoxide (DESO) on binding between quinine sulfate (QS) and DNA was studied by virtue of UV-Vis absorption, steady-state fluorescence spectroscopies, and fluorescence polarization measurements. The binding constant was determined at three different temperatures and the values of standard Gibbs energy change, enthalpy and entropy of binding were determined. The mechanism of binding and the effect of sulfoxides on this process was revealed. The values of binding constant, fluorescence polarization and iodide quenching studies confirmed that the main binding mode in QS-DNA system is groove binding. Addition of sulfoxides does not change the binding mechanism. Moreover, with addition of sulfoxides binding constant increases due to the removal of water molecules from DNA grooves making them more available for QS molecules. To explain the effect of DMSO and DESO on QS-DNA binding the photophysical properties of QS in aqueous solutions of DMSO and DESO were also studied. On the basis of quantum yield of QS in water, DMSO and DESO the types of intermolecular interactions were discussed. The obtained results show that quantum yield of QS in sulfoxides is lower compared with that in water and aqueous solution of 0.1 M H2SO4. QS forms ground state complexes with both DMSO and DESO that are stronger fluorophores compared with free QS molecules.

Citrullination of adenosine deaminase impairs its binding to dipeptidyl peptidase IV.

The presence of citrullinated adenosine deaminase (ADA) was reported in the synovial fluids of rheumatoid arthritis individuals. This work reports the effects of ADA citrullination on the formation/stabilization of ADA complex with dipeptidyl peptidase IV (DPPIV). The electrophoretic mobility of in vivo citrullinated ADA was diminished compared to the native one. The biosensor binding study demonstrated approximately four-fold lower affinity of both in vivo and in vitro citrullinated ADAs to DPPIV (KD = 161 ± 51.3 and 171 ± 52.2 nM, respectively) compared with wild ADA (KD = 38 ± 9.4 nM). These results were confirmed by examining the ADA interaction with DPPIV using size-exclusion chromatography and fluorescence anisotropy methods. The computational modeling of Arg142 â†’ Cit142 modification in ADA showed a local structural rearrangement and a less favorable binding affinity to DPPIV. According to these observations, citrullinated ADA being a possible target triggering autoimmunity hinders also the formation of ADA-DPPIV complex, essential in immune system function.

Fluorescence anisotropy studies on the Hoechst 33258-DNA interaction: the solvent effect.

Fluorescence anisotropy method was applied to characterize the interactions of DNA minor groove binder Hoechst 33258 with different solvents without and in the presence of DNA. It is important to study the interaction of small molecules with DNA for the purpose of better understanding the mechanism of their action, as well as to design novel and more effective compounds. Spectroscopic study of the ligand in different binary mixed solvents containing DMSO, alcohols and buffer was carried out. Studies were performed without and in the presence of DNA. Fluorescence anisotropy studies reveal the characteristics of Hoechst 33258 in different mixed solvents. The results show the strong dependence of the anisotropy of Hoechst 33258 on solvent content, viscosity and intermolecular interactions. Communicated by Ramaswamy H. Sarma.

Dielectric relaxation and proton field-cycling NMR relaxometry study of dimethyl sulfoxide/glycerol mixtures down to glass-forming temperatures.

Mixtures of glycerol and dimethyl sulfoxide (DMSO) are studied by dielectric spectroscopy (DS) and by 1H field-cycling (FC) NMR relaxometry in the entire concentration range and down to glass-forming temperatures (170-323 K). Molecular dynamics is accessed for 0 < xDMSO ≤ 0.64, at higher concentration phase separation occurs. The FC technique provides the frequency dependence of the spin-lattice relaxation rate which is transformed to the susceptibility representation and thus allows comparing NMR and DS results. The DS spectra virtually do not change with xDMSO and T, only the relaxation times become shorter. This is in contrast to the non-associated mixture toluene/quinaldine for which strong spectral changes occur. The FC relaxation spectra of glycerol in solution with DMSO or (deuterated) DMSO-d6 display a bimodal structure with a high-frequency part reflecting rotational and a low-frequency part reflecting translational dynamics. Regarding the rotational contribution in the glycerol/DMSO-d6 mixtures, no spectral change with xDMSO and T is observed. Yet, the non-deuterated mixture reveals a broader relaxation spectrum. Time constants τrot(T) probed by the two techniques complement each, a range 10-11 s < τ < 10 s is covered. The glass transition temperature Tg(xDMSO) is determined, yielding Tg = 149.5 ± 1 K of pure DMSO by extrapolation. Analysing the low-frequency FC NMR spectra allows to determine the diffusion coefficient Dtrans. Its logarithm shows a linear xDMSO-dependence as does lg τrot. The ratio Dtrans/Drot is independent of xDMSO and its low value indicates large separation of translation and rotation. The corresponding unphysically small hydrodynamic radius indicates strong failure of Stokes-Einstein-Debye relation. Such anomaly is taken as characteristics of a 3d hydrogen-bonded network. We conclude, although DMSO is an aprotic liquid the molecule is continuously incorporated in the hydrogen network of glycerol. Both molecules display common dynamics, i.e., no decoupling of the component dynamics is found in contrast to quinaldine/toluene with a similar Tg difference of its components.

Study of the Interaction of Novel Nonprotein Amino Acids with Trypsin by Steady-State Fluorescence Spectroscopy.

The interaction of (2R, 3S)-hydroxyleucine (trypsin inhibitor) and ß-hydroxyvaline with trypsin has been studied by the steady-state fluorescence spectroscopy. The analysis of fluorescence spectra has revealed the mechanism of binding of these nonprotein amino acids to trypsin. According to the docking (2R, 3S)-hydroxyleucine form hydrogen bonds with trypsin having little effect on tryptophan and tyrosine residues in enzyme molecule. The results obtained in this study indicate that fluorescence of trypsin is quenched at high concentrations of amino acids. Thus fluorescence spectra analysis confirms data obtained by molecular docking.

Photophysical properties of methylene blue in water and in aqueous solutions of dimethylsulfoxide.

A detailed study of the effect of aprotic polar solvents such as dimethylsulfoxide on methylene blue (MB) was carried out through a combination of UV-vis absorption and steady-state fluorescence spectroscopy techniques at 293.15 K. In aqueous solutions MB tends to exhibit strong tendency to aggregate. The dimerization behavior of MB in water was analyzed in terms of monomer-dimer equilibrium. The addition of dimethylsulfoxide prevents dimerization of dye molecules. From absorption spectra the dimerization constants and changes of standard Gibbs energy were calculated. From the steady-state fluorescence spectra the quantum yields and Stokes shifts were determined. To explain the effect of dimethylsulfoxide properly the other polar aprotic solvents such as N, N-dimethylformamide, acetonitrile and acetone were used. It is suggested that water structural effect is the major factor in aggregation phenomenon. Moreover the quantum yield increases drastically in dimethylsulfoxide compared with water assuming that MB may be characterized as viscosity probe.

The effect of dimethylsulfoxide on absorption and fluorescence spectra of aqueous solutions of acridine orange base.

The photophysical properties of aqueous solutions of acridine orange base (AOB) in wide concentration range of dimethylsulfoxide (DMSO) were studied by using absorption and steady-state fluorescence spectroscopy techniques at room temperature. The absorption spectrum of acridine orange in water shows two bands at 468 and 490 nm which were attributed to the dimer ((AOBH)2(2+)) and monomer (AOBH(+)) species respectively. In DMSO solution for the same AOB concentration only the basic form was detected with the band at 428 nm. The addition of DMSO to AOB aqueous solution leads to the decrease of absorption band at 490 nm and the new absorption band increases at 428 nm due to deprotonated (basic) form of AO and the first isosbestic point occurs at 450 nm. The evolution of isosbestic point reveals that an other equilibrium, due to the self-association of DMSO molecules takes place. From the steady-state fluorescence spectra Stokes shifts were calculated for AOB in aqueous and DMSO solutions. The addition of DMSO into the aqueous solution induced the enhancement in the fluorescence intensity of the dye compared to those in water.

Ab initio and DFT study of hydrogen bond interactions between ascorbic acid and dimethylsulfoxide based on FT-IR and FT-Raman spectra.

The hydrogen bonding of 1:1 complexes formed between l-ascorbic acid (LAA) and dimethylsulfoxide (DMSO) has been studied by means of ab initio and density functional theory (DFT) calculations. Solutions of l-ascorbic acid (AA) in dimethylsulfoxide (DMSO) have been studied by means of both FT-IR (4000-220 cm(-1)) and FT-Raman spectroscopy. Ab initio Hartree-Fock (HF) and DFT methods have been used to determine the structure and energies of stable conformers of various types of L-AA/DMSO complexes in gas phase and solution. The basis sets 6-31++G(**) and 6-311+G(*) were used to describe the structure, energy, charges and vibrational frequencies of interacting complexes in the gas phase. The optimized geometric parameters and interaction energies for various complexes at different theories have been estimated. Binding energies have been corrected for basis set superposition error (BSSE) and harmonic vibrational frequencies of the structures have been calculated to obtain the stable forms of the complexes. The self-consistent reaction field (SCRF) has been used to calculate the effect of DMSO as the solvent on the geometry, energy and charges of complexes. The solvent effect has been studied using the Onsager models. It is shown that the polarity of the solvent plays an important role on the structures and relative stabilities of different complexes. The results obtained show that there is a satisfactory correlation between experimental and theoretical predictions.

Study on the interaction between isoniazid and bovine serum albumin by fluorescence spectroscopy: the effect of dimethylsulfoxide.

The investigation of the binding between isoniazid (or isonicotinic acid hydrazide, INH) and serum albumin is of crucial importance to reveal the reason of resistant Mycobacterium tuberculosis strains towards INH and to increase the anti-tuberculous activity of INH. The interaction between INH and bovine serum albumin (BSA) was studied by fluorescence, UV and FT-IR spectroscopy methods. The analysis of the emission quenching at different temperatures revealed that the quenching mechanism corresponds to a static process and, as consequence; a complex INH-BSA is formed. The modified Stern-Volmer quenching constant K (a) and the corresponding thermodynamic parameters ΔH, ΔG and ΔS were calculated. The distance, r, between donor (BSA) and acceptor (INH) was calculated to be 2.14 nm based on Förster's non-radiative energy transfer theory (FRET). The results obtained on the basis of fluorescence study of BSA solutions at the presence of dimethylsulfoxide (DMSO) were discussed in terms of the hydration properties and competitive intermolecular interactions between BSA and solvent components. The dependence of binding constant on the concentration of added DMSO as a solvent component showed non monotonous behavior. The conformational changes of BSA and its secondary structure alterations at the presence of INH were revealed.

Vibrational spectra of dipropylsulfoxide.

FTIR and Raman spectra analysis of pure dipropylsulfoxide (DPSO), binary mixtures of DPSO/CCl(4), and DPSO/water has been first performed. The complex pattern of spectra has been explained on the basis of molecular interactions between DPSO and other molecules and, in the aqueous solutions, the role of both hydrophilic and hydrophobic interactions have been discussed depending on the concentrations. The changes in the intensities and in the frequencies of DPSO bands on concentration have been considered. The curve fitting procedure has been performed for both SO and C-H stretching region, and, on the basis of deconvolution results different type of molecular interactions have been considered. Density function theory DFT/(B3LYP) method has been used to determine the optimized geometry for free DPSO and for 1 DPSO:1 water complex. On the basis of the 6-31+G(d) quality sets parameters, the DFT calculated bond parameters and harmonic vibrations are in a very good agreement with experimental data.

Effect of diethylsulfoxide on the thermal denaturation of DNA.

DNA thermal denaturation has been investigated in aqueous solutions of diethylsulfoxide (DESO) by means of UV-vis and densimetry methods. It is suggested that, on the one hand, the structural change of entire solutions and, on the other hand, a direct interaction of DESO with DNA are responsible for the observed peculiar behavior. The results obtained were compared with those of dimethylsulfoxide (DMSO), also known from literature.

Glass-forming property of the system diethyl sulphoxide/water and its cryoprotective action on Escherichia coli survival.

In this work the thermal properties of diethyl sulphoxide (Et2SO), as well as its cryoprotective ability are studied and related to other well-known cryoprotectant substances, like dimethyl sulphoxide (Me2SO). We have investigated the thermal properties of Et2SO/water systems using Differential Scanning Calorimetry at a very low heating/cooling rate (2 degrees C/min). Liquid/solid or glassy/crystalline transitions have been observed only for the solutions with content of Et2SO ranging from 5 up to 40% w/w and/or greater than 85%. In the 45-75% w/w Et2SO range we have found a noticeable glass-forming tendency and a great stability of the amorphous state to the reheating. In samples with Et2SO content ranging from 80 to 85%, we observed a great stability of the glass forming by cooling, but a lesser stability to the subsequent reheating. The glass-forming tendency of these solutions is discussed in terms of existing competitive interactions between molecules of Et2SO, on the one hand, and Et2SO and water molecules, on the other hand. The results are well explainable on the basis of the model structure of water/Et2SO solutions, deduced by Raman and infrared studies [J. Mol. Struct. 665 (2003) 285-292]. The cryoprotective ability of Et2SO on Escherichia coli survival has been also investigated, and a comparison among Et2SO and other widely used cryoprotectants, like Me2SO and glycerol has been done. Survival of E. coli, determined after freezing-thawing process, was maximal at 45% w/w Et2SO (more than 85% viability). It should be noted that at the same concentration the survival is only about 35% in the presence of Me2SO and not more than 15% in the presence of glycerol. These features are well consisted with the glass-forming properties of Et2SO.

Vibrational spectra of diethylsulfoxide.

FT IR and Raman spectroscopic studies of pure diethylsulfoxide (DESO) in the liquid and in the solid states and its solutions in various solvents have been performed. Analysis of SO- and CH-stretching regions in a wide range of concentration shows that the bands may be fitted satisfactorily by considering seven components. In addition, fundamental frequencies have been assigned using ab initio calculations at the RHF/3-21G* levels. The results obtained confirm a viewpoint on a self-associative structure of DESO, and support the hypothesis of the existence of different types of intermolecular associates including both dipole-dipole and hydrogen bonding mechanisms.