The roles of nuclear orphan receptor NR2F6 in anti-viral innate immunity.

Proper transcription regulation by key transcription factors, such as IRF3, is critical for anti-viral defense. Dynamics of enhancer activity play important roles in many biological processes, and epigenomic analysis is used to determine the involved enhancers and transcription factors. To determine new transcription factors in anti-DNA-virus response, we have performed H3K27ac ChIP-Seq and identified three transcription factors, NR2F6, MEF2D and MAFF, in promoting HSV-1 replication. NR2F6 promotes HSV-1 replication and gene expression in vitro and in vivo, but not dependent on cGAS/STING pathway. NR2F6 binds to the promoter of MAP3K5 and activates AP-1/c-Jun pathway, which is critical for DNA virus replication. On the other hand, NR2F6 is transcriptionally repressed by c-Jun and forms a negative feedback loop. Meanwhile, cGAS/STING innate immunity signaling represses NR2F6 through STAT3. Taken together, we have identified new transcription factors and revealed the underlying mechanisms involved in the network between DNA viruses and host cells.

Removal of epigenetic repressive mark on inflammatory genes in fat liver.

Nonalcoholic fatty liver disease (NAFLD) is the most common chronic liver disease worldwide. The detailed epigenomic changes during fat accumulation in liver are not clear yet. Here, we performed ChIP-Seq analysis in the liver tissues of high-fat diet and regular chow diet mice and investigated the dynamic landscapes of H3K27ac and H3K9me3 marks on chromatin. We find that the activated typical enhancers marked with H3K27ac are enriched on lipid metabolic pathways in fat liver; however, super enhancers do not change much. The regions covered with H3K9me3 repressive mark seem to undergo great changes, and its peak number and intensity both decrease in fat liver. The enhancers located in lost H3K9me3 regions are enriched in lipid metabolism and inflammatory pathways; and motif analysis shows that they are potential targets for transcription factors involved in metabolic and inflammatory processes. Our study has revealed that H3K9me3 may play an important role during the pathogenesis of NAFLD through regulating the accessibility of enhancers.

Insight into the Adsorption Behaviors of Antimony onto Soils Using Multidisciplinary Characterization.

Antimony (Sb) pollution in soils is an important environmental problem, and it is imperative to investigate the migration and transformation behavior of Sb in soils. The adsorption behaviors and interaction mechanisms of Sb in soils were studied using integrated characterization techniques and the batch equilibrium method. The results indicated that the adsorption kinetics and isotherms of Sb onto soils were well fitted by the first-order kinetic, Langmuir, and Freundlich models, respectively, while the maximum adsorbed amounts of Sb (III) in soil 1 and soil 2 were 1314.46 mg/kg and 1359.25 mg/kg, respectively, and those of Sb (V) in soil 1 and soil 2 were 415.65 mg/kg and 535.97 mg/kg, respectively. In addition, pH ranging from 4 to 10 had little effect on the adsorption behavior of Sb. Moreover, it was found that Sb was mainly present in the residue fractions, indicating that Sb had high geochemical stability in soils. SEM analysis indicated that the distribution positions of Sb were highly coincident with Ca, which was mainly due to the existence of calcium oxides, such as calcium carbonate and calcium hydroxide, that affected Sb adsorption, and further resulted in Sb and Ca bearing co-precipitation. XPS analysis revealed the valence state transformation of Sb (III) and Sb (V), suggesting that Fe/Mn oxides and reactive oxygen species (ROS) served as oxidant or reductant to promote the occurrence of the Sb redox reaction. Sb was mobile and leachable in soils and posed a significant threat to surface soils, organisms, and groundwater. This work provides a fundamental understanding of Sb adsorption onto soils, as well as a theoretical guide for studies on the adsorption and migration behavior of Sb in soils.