Double-σ-Bonded Close-Shell Dimers and Peroxy-Linked Open-Shell Dimer Derived from a C3 Symmetric Trioxophenalenyl Neutral Diradical.

A novel neutral diradical of π-extended phenalenyl derivative having three oxo-groups, tri-tert-butyl-1,4,7-trioxophenalenyl, and two types of the corresponding σ-dimers were investigated. Quantum chemical calculations showed that the neutral diradical is in triplet ground state having doubly degenerate singly occupied molecular orbitals. The neutral diradical undergoes a σ-dimerization, generating two types of σ-dimers immediately after the preparation. One of the σ-dimers, which was selectively generated in the crystalline state, was a close-shell dimer linked through double-σ-bonds on the phenalenyl skeleton with a long C-C bond length of 1.66 Å. The other σ-dimer, which existed only in the solution state, was a peroxy-linked open-shell dimer in which one σ-bond was formed between two oxygen atoms. Furthermore, the temperature-dependent 1 H NMR and ESR spectra revealed that these σ-dimers are in equilibrium in the solution state by the reversible σ-bond formation/cleavage via the neutral diradical as a key intermediate.

Design and Synthesis of a C3 Symmetrical Phenalenyl Derivative with Three Oxo Groups by Regioselective Deoxygenation/Oxygenation.

Tri-tert-butylated 4,7-dihydroxyphenalenone was designed and synthesized from a corresponding 4,9-dimethoxyphenalenone derivative by regioselective deoxygenation/oxygenation. The 4,7-dihydroxyphenalenone derivative showed a chromic behavior accompanied by protonation and deprotonation, giving monocation and dianion species, respectively, and their C3 symmetric electronic structures were elucidated by experimental and theoretical methods.

Proton Order-Disorder Phenomena in a Hydrogen-Bonded Rhodium-η(5)-Semiquinone Complex: A Possible Dielectric Response Mechanism.

A newly synthesized one-dimensional (1D) hydrogen-bonded (H-bonded) rhodium(II)-η(5)-semiquinone complex, [Cp*Rh(η(5)-p-HSQ-Me4)]PF6 ([1]PF6; Cp* = 1,2,3,4,5-pentamethylcyclopentadienyl; HSQ = semiquinone) exhibits a paraelectric-antiferroelectric second-order phase transition at 237.1 K. Neutron and X-ray crystal structure analyses reveal that the H-bonded proton is disordered over two sites in the room-temperature (RT) phase. The phase transition would arise from this proton disorder together with rotation or libration of the Cp* ring and PF6(-) ion. The relative permittivity εb' along the H-bonded chains reaches relatively high values (ca., 130) in the RT phase. The temperature dependence of (13)C CP/MAS NMR spectra demonstrates that the proton is dynamically disordered in the RT phase and that the proton exchange has already occurred in the low-temperature (LT) phase. Rate constants for the proton exchange are estimated to be 10(-4)-10(-6) s in the temperature range of 240-270 K. DFT calculations predict that the protonation/deprotonation of [1](+) leads to interesting hapticity changes of the semiquinone ligand accompanied by reduction/oxidation by the π-bonded rhodium fragment, producing the stable η(6)-hydroquinone complex, [Cp*Rh(3+)(η(6)-p-H2Q-Me4)](2+) ([2](2+)), and η(4)-benzoquinone complex, [Cp*Rh(+)(η(4)-p-BQ-Me4)] ([3]), respectively. Possible mechanisms leading to the dielectric response are discussed on the basis of the migration of the protonic solitons comprising of [2](2+) and [3], which would be generated in the H-bonded chain.

Control of Exchange Interactions in π Dimers of 6-Oxophenalenoxyl Neutral π Radicals: Spin-Density Distributions and Multicentered-Two-Electron Bonding Governed by Topological Symmetry and Substitution at the 8-Position.

The tri-tert-butylphenalenyl (TBPLY) radical exists as a π dimer in the crystal form with perfect overlapping of the singly occupied molecular orbitals (SOMOs) causing strong antiferromagnetic exchange interactions. 2,5-Di-tert-butyl-6-oxophenalenoxyl (6OPO) is a phenalenyl-based air-stable neutral π radical with extensive spin delocalization and is a counter analogue of phenalenyl in terms of the topological symmetry of the spin density distribution. X-ray crystal structure analyses showed that 8-tert-butyl- and 8-(p-XC6H4)-6OPOs (X=I, Br) also form π dimers in the crystalline state. The π-dimeric structure of 8-tert-butyl-6OPO is seemingly similar to that of TBPLY even though its SOMO-SOMO overlap is small compared with that of TBPLY. The 8-(p-XC6H4) derivatives form slipped stacking π dimers in which the SOMO-SOMO overlaps are greater than in 8-tert-butyl-6OPO, but still smaller than in TBPLY. The solid-state electronic spectra of the 6OPO derivatives show much weaker intradimer charge-transfer bands, and SQUID measurements for 8-(p-BrC6H4)-6OPO show a weak antiferromagnetic exchange interaction in the π dimer. These results demonstrate that the control of the spin distribution patterns of the phenalenyl skeleton switches the mode of exchange interaction within the phenalenyl-based π dimer. The formation of the relevant multicenter-two-electron bonds is discussed.

Electronic stabilization effect of a spin-delocalized neutral radical: synthesis of an 8-cyano-6-oxophenalenoxyl derivative and quantitative evaluation of the electronic spin structure in terms of resonance structures.

A new 2,5-di-tert-butyl-6-oxophenalenoxyl (6OPO) derivative with a cyano group at the 8-position, where a large spin density resides, has been synthesized. This neutral radical exhibits high stability in the solid state in air despite the low steric protection on the 8-position; the stability is comparable to that of a corresponding 8-tert-butylated 6OPO derivative. EPR/(1)H-ENDOR/TRIPLE (electron paramagnetic resonance/(1)H-electron-nuclear double resonance/TRIPLE) spectroscopy and cyclic voltammetry showed an extended spin delocalization on the cyano group and a significant increase in electron-accepting ability relative to that of the 8-tert-butylated 6OPO derivative. DFT calculations indicated the extension of a singly occupied molecular orbital (SOMO) onto the cyano group and the lower-lying SOMO and LUMO in comparison with those of the 8-tert-butylated 6OPO derivative, which was consistent with experimental results. Furthermore, the extended nature of π conjugation onto the cyano group was quantitatively evaluated by calculating the contributing weights of resonance structures in terms of a molecular orbital (MO)-based valence-bond (VB) method. Herein, the synthesis and physical properties of the 8-cyano-6OPO derivative are described, emphasizing that the high stability arises from the electronic effect of the cyano group. Also, the usefulness of the quantitative resonance structure analysis is shown.

Hexaazaphenalene derivatives: one-pot synthesis, hydrogen-bonded chiral helix, and fluorescence properties.

Symmetric hexaazaphenalenes (R = phenyl and tert-butyl) have been synthesized by one-pot condensations of corresponding amidine hydrochlorides with tricyanomethanide. The hexaazaphenalenes are linked with each other by a N-H···N hydrogen-bonding interaction in the crystalline states. Interestingly, a planar and achiral tert-butylated derivative was crystallized in a chiral space group with assembly of one-handed helical hydrogen-bonded chains. Hexaazaphenalenyl anions were isolated as air- and water-stable tetraethyl ammonium salts.

Alternating covalent bonding interactions in a one-dimensional chain of a phenalenyl-based singlet biradical molecule having Kekulé structures.

A novel naphthoquinoid singlet biradical (2a) stabilized by phenalenyl rings is prepared by a multistep procedure and is investigated in terms of covalent bonding interactions. The molecule 2a gives single crystals, in which a 1D chain is formed with a very short π-π contact at the overlapping phenalenyl rings. The unpaired electrons in 2a are involved in covalent bonding interactions not only within the molecule but also between the molecules in the 1D chain, and a linear conjugation is made of the alternating intra- and intermolecular covalent bonding interactions through conventional π-conjugation and multicenter bonding, respectively. The linear conjugation causes a lower-energy shift of the optical transition band in the crystal, but the transition energy is higher than that of the benzoquinoid singlet biradical (1a). This optical behavior and the magnetic susceptibility measurements reveal that the intermolecular covalent bonding interaction in the 1D chain of 2a is greater in strength than the intramolecular one, despite the fact that a fully conjugated Kekulé structure can be drawn for 2a.

Electronic structure of delocalized singlet biradical Ph2-IDPL solid film.

The film structure and electronic structure of a biradical hydrocarbon, diphenyl derivative of s-indacenodiphenalene (Ph(2)-IDPL) solid film has been investigated. A small energy gap between the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) compared with that of typical π-conjugated small molecules was observed even for the amorphous film of Ph(2)-IDPL. This result indicates that the small HOMO-LUMO gap is an important characteristic of the singlet biradical electronic structure and well explains the previously reported ambipolar field effects of amorphous Ph(2)-IDPL film by Chikamatsu et al., Appl. Phys. Lett. 2007, 91, 043506. It was found that the gas-deposition method substantially improved the crystallinity of the film where Ph(2)-IDPL molecules form quasi one-dimensional (1D) molecular chains normal to the substrate surface. An extremely small HOMO-LUMO gap was observed in the polycrystalline Ph(2)-IDPL film, which is possibly caused by strong intermolecular coupling. The photon energy dependence of ultraviolet photoemission spectra shows that the stacked Ph(2)-IDPL molecular chain in the polycrystalline film develops an energy band structure in the direction of the surface normal of the film. The intermolecular covalency therefore evolves into the quasi 1D energy band along the molecular stacking direction.

Triple-stranded metallo-helicates addressable as Lloyd's electron spin qubits.

We have first achieved the synthesis of triple-stranded metallo-helicates composed of 4,4':2',2'':4'',4'''-quaterimidazole (Qim) and Mn(II) or Zn(II) ions, which serve as synthetic electron spin qubits (quantum bits). In the crystal structure, a hydrogen-bonding network through counteranions and/or crystal solvents was constructed by the outward N-H hydrogen-bonding functional groups intrinsic to the imidazole skeleton. Importantly, these helicates showed high stability even in a solution state at room temperature. These salient features of triple helicates of Qim are different from those of reported metallo-helicates. These chemical properties of the Qim-based triple helicates allow us to synthesize magnetically diluted single crystals composed of Mn(II) (S = 5/2) and diamagnetic Zn(II) complexes of Qim in an appropriate Mn(II)/Zn(II) ratio. The magnetically diluted crystals can afford to build up the prototype of electron-spin qubits of Lloyd's one-dimensional periodic system, which gives a practical approach to scalable quantum computers/quantum information processing systems (QCs/QIPSs). The experiments have proven the practical capability of oligo(imidazole)s as a component of Lloyd's system which has nonequivalent g-tensors within the helicate (g-engineering). The helical symmetry plays an important role in giving a prototype of the synthetic spin qubits of the formidable Lloyd model. This result links supramolecular chemistry to the field of QCs/QIPSs.

Anomalous water molecules and mechanistic effects of water nanotube clusters confined to molecular porous crystals.

The movement of water molecules in the limited space present within nanoscale regions, which is different from the molecular motion of bulk water, is significantly affected by strong interfacial interactions with the surrounding outer walls. Hence, most of the water molecules that are confined to nanochannel spaces having widths less than ca. 2 nm can generally be classified together as "structural water". Since the motions of such water molecules are limited by interfacial interactions with the outer wall, the nature of structural water, which is strongly influenced by the interactions, will have different characteristics from normal water. For our investigations on the characteristics of structural water, we have developed a nanoporous crystal with a diameter of ca. 1.6 nm; it was constructed from 1-D hydrophilic channels by self-organization of the designed molecules. A tubelike three-layered water cluster, called a water nanotube (WNT), is formed in each internal channel space and is regulated by H-bonds with the outer wall. The WNT undergoes a glass transition (T(g) = 107 K) and behaves as a liquid; it freezes at 234 K and changes into an icelike nanotube cluster. In this study, the structure of the WNT is investigated through neutron structure analysis, and it is observed to stabilize by a mechanistic anchor effect of structural water. Furthermore, from neutron-scattering experiments, it is seen that a few water molecules around the center of the WNT move approximately with the same diffusion constant as those in bulk water; however, the residence time and average jump length are longer, despite the restrictions imposed by the H-bonding with structural water. The behavior of mobile water within a WNT is investigated; this can be used to elucidate the mechanism for the effect of structural water on vital functions on the cell surface.

Curve-structured phenalenyl chemistry: synthesis, electronic structure, and bowl-inversion barrier of a phenalenyl-fused corannulene anion.

We have demonstrated the features of curve-structured phenalenyl chemistry, for the first time. A phenalenyl-fused corannulene anion has been designed by the annelation of a six-memberd ring across peri-positions of corannulene and generated as a stable species in a degassed solution. The 1H and 13C NMR spectra have shown the highly symmetrical structure and high-field shifts of protons and carbons at the asterisked positions in the chemical structure, indicating the occurrence of large negative charge densities at these positions. These results well agree with the HOMO picture and the electrostatic potential surface, demonstrating the phenalenyl anion-type electronic structure is retained in the curved-surface pi-system. The calculated bowl-inversion barrier of the anion (11.3 kcal/mol) is larger than that of corannulene (9.2 kcal/mol) because of peri-annelation of the corannulene skeleton. The calculations of the barriers of the neutral radical (12.6 kcal/mol), radical dianion (8.1 kcal/mol), and trianion (5.4 kcal/mol) of the phenalenyl-fused corannulene have exhibited a stepwise flattening of the curvature with increase in negative charge. Therefore, we have revealed that the bowl-inversion barrier of the anion is governed by the setoff of the peri-annelation and negative charge effects.

Thermochromism in an organic crystal based on the coexistence of sigma- and pi-dimers.

Transition-metal complexes and organic radical molecules can be used to make electric conductors and ferromagnets, the optical properties of which can be controlled by changing temperature and are used as molecular switches and sensors. Whereas a number of organic radicals in solution show temperature-dependent optical properties, such behaviour in crystalline forms is more rare. Here, we show a fully reversible continuous thermochromism with a unique mechanism in purely organic crystals of diazaphenalenyl radical. This behaviour is based on changes in the diazaphenalenyl dimers coexisting in the crystal. From the X-ray crystal structure analyses and temperature-dependent visible spectra, we conclude the presence of a thermal equilibrium between sigma-bonded and pi-bonded dimers, which are separated by 2.62(6) kcal mol(-1). This conclusion is supported by room-temperature electron spin resonance spectra of the solid, which showed signals that are attributable to a thermally accessible triplet state of the pi-dimer structure. This proves the coexistence of two dimers of different bonding natures in the crystal, causing it to demonstrate thermometer-like behaviour.

Zwitterionic pi-radical involving EDT-TTF-imidazole and F4TCNQ: redox properties and self-assembled structure by hydrogen-bonds and multiple S...S interactions.

The reaction between an imidazole-functionalized EDT-TTF and F(4)TCNQ produced a zwitterionic pi-radical, which formed a self-assembled structure by the cooperation of hydrogen-bonds and multiple S...S interactions and exhibited three-step oxidation processes and a high electrical conductivity as a single-component organic molecule.

Synthesis and characterization of acetylene-linked bisphenalenyl and metallic-like behavior in its charge-transfer complex.

We prepared and isolated a phenalenyl-based neutral hydrocarbon (1 b) with a biradical index of 14%, as well as its charge-transfer (CT) complex 1 b-F(4)-TCNQ. The crystal structure and the small HOMO-LUMO gap assessed by electrochemical and optical methods support the singlet-biradical contribution to the ground state of the neutral 1 b. This biradical character suggests that 1 b has the electronic structure of phenalenyl radicals coupled weakly through an acetylene linker, that is, some independence of the two phenalenyl moieties. The monocationic species 1 b*+ was obtained by reaction with the organic electron acceptor F4-TCNQ. The cationic species has a small disproportionation energy deltaE for the reaction 2 x 1 b*+ <==> 1 b + 1 b2+, which presumably originates from the independence of the phenalenyl moieties. The small deltaE led to a small on-site Coulombic repulsion U(eff) = 0.61 eV in the CT complex. Moreover, a very effective orbital overlap of the phenalenyl rings between molecules afforded a relatively large transfer integral t = 0.09 eV. The small U(eff)/4t ratio (= 1.7) resulted in a metallic-like conductive behavior at around room temperature. Below 280 K, the CT complex showed a transition into a semiconductive state as a result of bond formation between phenalenyl and F4-TCNQ carbon atoms.

Second hyperpolarizabilities of singlet polycyclic diphenalenyl radicals: effects of the nature of the central heterocyclic ring and substitution to diphenalenyl rings.

Adopting density functional theory and a hybrid exchange-correlation functional, the relationship between the second hyperpolarizability (gamma) and the diradical character has been investigated for diphenalenyl-based compounds containing different heterocyclic five-membered central rings (C(4)H(4)X, where X = NH, PH, O, S, CH(2), SiH(2), BH, GaH, C=O, C=S, and C=Se) or substituted by donor (NH(2))/acceptor(NO(2)) groups. It turns out that these structural modifications can tune the diradical character from 0.0 to 0.968 and lead to variations of gamma over more than 1 order of magnitude, demonstrating the controllability of gamma in this family of compounds. In particular, when the central ring is strongly aromatic, the diradical character is larger than 0.7, which is associated with pretty large gamma values except for almost the pure diradical case (y approximately 1). On the other hand, when the aromaticity decreases--or the antiaromaticity increases--the diradical character and the second hyperpolarizability get smaller. These relationships are correlated to structural (bond length alternation) and charge distribution (charge transfer between the phenalenyl rings and the central ring) properties, which account for the relative importance of the resonance diradical, zwitterionic, and quinoid forms. Therefore, the diradical character and the second hyperpolarizability can be controlled by the aromaticity of the ring while the paradigm of the enhancement of gamma for intermediate diradical character is globally verified. Then, upon introducing donor groups, the zwitterionic character increases, leading to closed-shell species and small second hyperpolarizabilities. In the case of substitution by acceptor groups, the charge transfer is reduced but the diradical character and the second hyperpolarizability hardly changes.