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J Mol Model ; 11(3): 194-9, 2005 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-15864673

RESUMEN

A three dimensional structural model of Glutathione-S-transferase (GST) of the lymphatic filarial parasite Wuchereria bancrofti (wb) was constructed by homology modeling. The three dimensional X-ray crystal structure of porcine pi-class GST with PDB ID: 2gsr-A chain protein with 42% sequential and functional homology was used as the template. The model of wbGST built by MODELLER6v2 was analyzed by the PROCHECK programs. Ramachandran plot analysis showed that 93.5% of the residues are in the core region followed by 5.4 and 1.1% residues in the allowed and generously allowed regions, respectively. None of the non-glycine residues is in disallowed regions. The PROSA II z-score and the energy graph for the final model further confirmed the quality of the modeled structure. The computationally modeled three-dimensional (3D) structure of wbGST has been submitted to the Protein Data Bank (PDB) (PDB ID: 1SFM and RCSB ID: RCSB021668). 1SFM was used for docking with GST inhibitors by Hex4.2 macromolecular docking using spherical polar Fourier correlations.


Asunto(s)
Glutatión Transferasa/química , Proteínas del Helminto/química , Wuchereria bancrofti/enzimología , Aminoácidos , Animales , Antinematodos , Sitios de Unión , Diseño de Fármacos , Glutatión/análogos & derivados , Glutatión Transferasa/antagonistas & inhibidores , Ligandos , Modelos Moleculares , Programas Informáticos
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