Framework for inferring empirical causal graphs from binary data to support multidimensional poverty analysis.

Poverty is one of the fundamental issues that mankind faces. To solve poverty issues, one needs to know how severe the issue is. The Multidimensional Poverty Index (MPI) is a well-known approach that is used to measure a degree of poverty issues in a given area. To compute MPI, it requires information of MPI indicators, which are binary variables collecting by surveys, that represent different aspects of poverty such as lacking of education, health, living conditions, etc. Inferring impacts of MPI indicators on MPI index can be solved by using traditional regression methods. However, it is not obvious that whether solving one MPI indicator might resolve or cause more issues in other MPI indicators and there is no framework dedicating to infer empirical causal relations among MPI indicators. In this work, we propose a framework to infer causal relations on binary variables in poverty surveys. Our approach performed better than baseline methods in simulated datasets that we know ground truth as well as correctly found a causal relation in the Twin births dataset. In Thailand poverty survey dataset, the framework found a causal relation between smoking and alcohol drinking issues. We provide R CRAN package'BiCausality' that can be used in any binary variables beyond the poverty analysis context.

Improving sentiment analysis on clinical narratives by exploiting UMLS semantic types.

Sentiments associated with assessments and observations recorded in a clinical narrative can often indicate a patient's health status. To perform sentiment analysis on clinical narratives, domain-specific knowledge concerning meanings of medical terms is required. In this study, semantic types in the Unified Medical Language System (UMLS) are exploited to improve lexicon-based sentiment classification methods. For sentiment classification using SentiWordNet, the overall accuracy is improved from 0.582 to 0.710 by using logistic regression to determine appropriate polarity scores for UMLS 'Disorders' semantic types. For sentiment classification using a trained lexicon, when disorder terms in a training set are replaced with their semantic types, classification accuracies are improved on some data segments containing specific semantic types. To select an appropriate classification method for a given data segment, classifier combination is proposed. Using classifier combination, classification accuracies are improved on most data segments, with the overall accuracy of 0.882 being obtained.

A nonparametric framework for inferring orders of categorical data from category-real pairs.

Given a dataset of careers and incomes, how large a difference of incomes between any pair of careers would be? Given a dataset of travel time records, how long do we need to spend more when choosing a public transportation mode A instead of B to travel? In this paper, we propose a framework that is able to infer orders of categories as well as magnitudes of difference of real numbers between each pair of categories using an estimation statistics framework. Our framework not only reports whether an order of categories exists, but it also reports magnitudes of difference of each consecutive pair of categories in the order. In a large dataset, our framework is scalable well compared with existing frameworks. The proposed framework has been applied to two real-world case studies: 1) ordering careers by incomes from 350,000 households living in Khon Kaen province, Thailand, and 2) ordering sectors by closing prices from 1,060 companies in NASDAQ stock market between years 2000 and 2016. The results of careers ordering demonstrate income inequality among different careers. The stock market results illustrate dynamics of sector domination that can change over time. Our approach is able to be applied in any research area that has category-real pairs. Our proposed Dominant-Distribution Network provides a novel approach to gain new insight of analyzing category orders. A software of this framework is available for researchers or practitioners in an R CRAN package: EDOIF.

A neuroinformatics of brain modeling and its implementation in the Brain Operation Database BODB.

We present principles for an integrated neuroinformatics framework which makes explicit how models are grounded on empirical evidence, explain (or not) existing empirical results and make testable predictions. The new ontological framework makes explicit how models bring together structural, functional, and related empirical observations. We emphasize schematics of the model's operation linked to summaries of empirical data (SEDs) used in both the design and testing of the model, with tests comparing SEDs to summaries of simulation results (SSRs) from the model. We stress the importance of protocols for models as well as experiments. We complement the structural ontology of nested brain structures with a functional ontology of Brain Operating Principles (BOPs) for observed neural function and an ontological framework for grounding models in empirical data. We present an implementation of this ontological framework in the Brain Operation Database (BODB), an environment in which modelers and experimentalists can work together by making use of their shared empirical data, models and expertise.