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1.
Proc Natl Acad Sci U S A ; 121(19): e2313568121, 2024 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-38648470

RESUMEN

United States (US) Special Operations Forces (SOF) are frequently exposed to explosive blasts in training and combat, but the effects of repeated blast exposure (RBE) on SOF brain health are incompletely understood. Furthermore, there is no diagnostic test to detect brain injury from RBE. As a result, SOF personnel may experience cognitive, physical, and psychological symptoms for which the cause is never identified, and they may return to training or combat during a period of brain vulnerability. In 30 active-duty US SOF, we assessed the relationship between cumulative blast exposure and cognitive performance, psychological health, physical symptoms, blood proteomics, and neuroimaging measures (Connectome structural and diffusion MRI, 7 Tesla functional MRI, [11C]PBR28 translocator protein [TSPO] positron emission tomography [PET]-MRI, and [18F]MK6240 tau PET-MRI), adjusting for age, combat exposure, and blunt head trauma. Higher blast exposure was associated with increased cortical thickness in the left rostral anterior cingulate cortex (rACC), a finding that remained significant after multiple comparison correction. In uncorrected analyses, higher blast exposure was associated with worse health-related quality of life, decreased functional connectivity in the executive control network, decreased TSPO signal in the right rACC, and increased cortical thickness in the right rACC, right insula, and right medial orbitofrontal cortex-nodes of the executive control, salience, and default mode networks. These observations suggest that the rACC may be susceptible to blast overpressure and that a multimodal, network-based diagnostic approach has the potential to detect brain injury associated with RBE in active-duty SOF.


Asunto(s)
Traumatismos por Explosión , Personal Militar , Humanos , Traumatismos por Explosión/diagnóstico por imagen , Adulto , Masculino , Estados Unidos , Imagen por Resonancia Magnética , Femenino , Tomografía de Emisión de Positrones , Cognición/fisiología , Encéfalo/diagnóstico por imagen , Encéfalo/metabolismo , Adulto Joven
2.
NMR Biomed ; 37(4): e5087, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38168082

RESUMEN

The increasing availability of high-performance gradient systems in human MRI scanners has generated great interest in diffusion microstructural imaging applications such as axonal diameter mapping. Practically, sensitivity to axon diameter in diffusion MRI is attained at strong diffusion weightings b , where the deviation from the expected 1 / b scaling in white matter yields a finite transverse diffusivity, which is then translated into an axon diameter estimate. While axons are usually modeled as perfectly straight, impermeable cylinders, local variations in diameter (caliber variation or beading) and direction (undulation) are known to influence axonal diameter estimates and have been observed in microscopy data of human axons. In this study, we performed Monte Carlo simulations of diffusion in axons reconstructed from three-dimensional electron microscopy of a human temporal lobe specimen using simulated sequence parameters matched to the maximal gradient strength of the next-generation Connectome 2.0 human MRI scanner ( ≲ 500 mT/m). We show that axon diameter estimation is accurate for nonbeaded, nonundulating fibers; however, in fibers with caliber variations and undulations, the axon diameter is heavily underestimated due to caliber variations, and this effect overshadows the known overestimation of the axon diameter due to undulations. This unexpected underestimation may originate from variations in the coarse-grained axial diffusivity due to caliber variations. Given that increased axonal beading and undulations have been observed in pathological tissues, such as traumatic brain injury and ischemia, the interpretation of axon diameter alterations in pathology may be significantly confounded.


Asunto(s)
Imagen de Difusión por Resonancia Magnética , Sustancia Blanca , Humanos , Imagen de Difusión por Resonancia Magnética/métodos , Axones/patología , Imagen por Resonancia Magnética , Microscopía Electrónica
3.
Magn Reson Med ; 91(2): 541-557, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37753621

RESUMEN

PURPOSE: To investigate whether spatiotemporal magnetic field monitoring can correct pronounced eddy current-induced artifacts incurred by strong diffusion-sensitizing gradients up to 300 mT/m used in high b-value diffusion-weighted (DW) EPI. METHODS: A dynamic field camera equipped with 16 1 H NMR field probes was first used to characterize field perturbations caused by residual eddy currents from diffusion gradients waveforms in a 3D multi-shot EPI sequence on a 3T Connectom scanner for different gradient strengths (up to 300 mT/m), diffusion directions, and shots. The efficacy of dynamic field monitoring-based image reconstruction was demonstrated on high-gradient strength, submillimeter resolution whole-brain ex vivo diffusion MRI. A 3D multi-shot image reconstruction framework was developed that incorporated the nonlinear phase evolution measured with the dynamic field camera. RESULTS: Phase perturbations in the readout induced by residual eddy currents from strong diffusion gradients are highly nonlinear in space and time, vary among diffusion directions, and interfere significantly with the image encoding gradients, changing the k-space trajectory. During the readout, phase modulations between odd and even EPI echoes become non-static and diffusion encoding direction-dependent. Superior reduction of ghosting and geometric distortion was achieved with dynamic field monitoring compared to ghosting reduction approaches such as navigator- and structured low-rank-based methods or MUSE followed by image-based distortion correction with the FSL tool "eddy." CONCLUSION: Strong eddy current artifacts characteristic of high-gradient strength DW-EPI can be well corrected with dynamic field monitoring-based image reconstruction.


Asunto(s)
Artefactos , Procesamiento de Imagen Asistido por Computador , Humanos , Procesamiento de Imagen Asistido por Computador/métodos , Imagen de Difusión por Resonancia Magnética/métodos , Encéfalo/diagnóstico por imagen , Imagenología Tridimensional/métodos , Imagen Eco-Planar/métodos
4.
bioRxiv ; 2023 Apr 19.
Artículo en Inglés | MEDLINE | ID: mdl-37131702

RESUMEN

We consider the effect of non-cylindrical axonal shape on axonal diameter mapping with diffusion MRI. Practical sensitivity to axon diameter is attained at strong diffusion weightings b, where the deviation from the 1/b scaling yields the finite transverse diffusivity, which is then translated into axon diameter. While axons are usually modeled as perfectly straight, impermeable cylinders, the local variations in diameter (caliber variation or beading) and direction (undulation) have been observed in microscopy data of human axons. Here we quantify the influence of cellular-level features such as caliber variation and undulation on axon diameter estimation. For that, we simulate the diffusion MRI signal in realistic axons segmented from 3-dimensional electron microscopy of a human brain sample. We then create artificial fibers with the same features and tune the amplitude of their caliber variations and undulations. Numerical simulations of diffusion in fibers with such tunable features show that caliber variations and undulations result in under- and over-estimation of axon diameters, correspondingly; this bias can be as large as 100%. Given that increased axonal beading and undulations have been observed in pathological tissues, such as traumatic brain injury and ischemia, the interpretation of axon diameter alterations in pathology may be significantly confounded.

5.
bioRxiv ; 2023 Feb 16.
Artículo en Inglés | MEDLINE | ID: mdl-36824894

RESUMEN

Purpose: To demonstrate the advantages of spatiotemporal magnetic field monitoring to correct eddy current-induced artifacts (ghosting and geometric distortions) in high gradient strength diffusion MRI (dMRI). Methods: A dynamic field camera with 16 NMR field probes was used to characterize eddy current fields induced from diffusion gradients for different gradients strengths (up to 300 mT/m), diffusion directions, and shots in a 3D multi-shot EPI sequence on a 3T Connectom scanner. The efficacy of dynamic field monitoring-based image reconstruction was demonstrated on high-resolution whole brain ex vivo dMRI. A 3D multi-shot image reconstruction framework was informed with the actual nonlinear phase evolution measured with the dynamic field camera, thereby accounting for high-order eddy currents fields on top of the image encoding gradients in the image formation model. Results: Eddy current fields from diffusion gradients at high gradient strength in a 3T Connectom scanner are highly nonlinear in space and time, inducing high-order spatial phase modulations between odd/even echoes and shots that are not static during the readout. Superior reduction of ghosting and geometric distortion was achieved with dynamic field monitoring compared to ghosting approaches such as navigator- and structured low-rank-based methods or MUSE, followed by image-based distortion correction with eddy. Improved dMRI analysis is demonstrated with diffusion tensor imaging and high-angular resolution diffusion imaging. Conclusion: Strong eddy current artifacts characteristic of high gradient strength dMRI can be well corrected with dynamic field monitoring-based image reconstruction, unlike the two-step approach consisting of ghosting correction followed by geometric distortion reduction with eddy.

6.
NMR Biomed ; 36(2): e4831, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36106429

RESUMEN

Diffusion magnetic resonance imaging (dMRI) of whole ex vivo human brain specimens enables three-dimensional (3D) mapping of structural connectivity at the mesoscopic scale, providing detailed evaluation of fiber architecture and tissue microstructure at a spatial resolution that is difficult to access in vivo. To account for the short T2 and low diffusivity of fixed tissue, ex vivo dMRI is often acquired using strong diffusion-sensitizing gradients and multishot/segmented 3D echo-planar imaging (EPI) sequences to achieve high spatial resolution. However, the combination of strong diffusion-sensitizing gradients and multishot/segmented EPI readout can result in pronounced ghosting artifacts incurred by nonlinear spatiotemporal variations in the magnetic field produced by eddy currents. Such ghosting artifacts cannot be corrected with conventional correction solutions and pose a significant roadblock to leveraging human MRI scanners with ultrahigh gradients for ex vivo whole-brain dMRI. Here, we show that ghosting-correction approaches that correct for either polarity-related ghosting or shot-to-shot variations in a separate manner are suboptimal for 3D multishot diffusion-weighted EPI experiments in fixed human brain specimens using strong diffusion-sensitizing gradients on the 3-T Connectom MRI scanner, resulting in orientationally biased dMRI estimates. We apply a recently developed advanced k-space reconstruction method based on structured low-rank matrix (SLM) modeling that handles both polarity-related ghosting and shot-to-shot variation simultaneously, to mitigate artifacts in high-angular resolution multishot dMRI data acquired in several fixed human brain specimens at 0.7-0.8-mm isotropic spatial resolution using b-values up to 10,000 s/mm2 and gradient strengths up to 280 mT/m. We demonstrate the improved mapping of diffusion tensor imaging and fiber orientation distribution functions in key neuroanatomical areas distributed across the whole brain using SLM-based EPI ghost correction compared with alternative techniques.


Asunto(s)
Imagen de Difusión Tensora , Imagen Eco-Planar , Humanos , Imagen Eco-Planar/métodos , Encéfalo/diagnóstico por imagen , Imagen de Difusión por Resonancia Magnética/métodos , Imagen por Resonancia Magnética , Artefactos , Procesamiento de Imagen Asistido por Computador/métodos
7.
Neuroimage ; 254: 118958, 2022 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-35217204

RESUMEN

Tremendous efforts have been made in the last decade to advance cutting-edge MRI technology in pursuit of mapping structural connectivity in the living human brain with unprecedented sensitivity and speed. The first Connectom 3T MRI scanner equipped with a 300 mT/m whole-body gradient system was installed at the Massachusetts General Hospital in 2011 and was specifically constructed as part of the Human Connectome Project. Since that time, numerous technological advances have been made to enable the broader use of the Connectom high gradient system for diffusion tractography and tissue microstructure studies and leverage its unique advantages and sensitivity to resolving macroscopic and microscopic structural information in neural tissue for clinical and neuroscientific studies. The goal of this review article is to summarize the technical developments that have emerged in the last decade to support and promote large-scale and scientific studies of the human brain using the Connectom scanner. We provide a brief historical perspective on the development of Connectom gradient technology and the efforts that led to the installation of three other Connectom 3T MRI scanners worldwide - one in the United Kingdom in Cardiff, Wales, another in continental Europe in Leipzig, Germany, and the latest in Asia in Shanghai, China. We summarize the key developments in gradient hardware and image acquisition technology that have formed the backbone of Connectom-related research efforts, including the rich array of high-sensitivity receiver coils, pulse sequences, image artifact correction strategies and data preprocessing methods needed to optimize the quality of high-gradient strength diffusion MRI data for subsequent analyses. Finally, we review the scientific impact of the Connectom MRI scanner, including advances in diffusion tractography, tissue microstructural imaging, ex vivo validation, and clinical investigations that have been enabled by Connectom technology. We conclude with brief insights into the unique value of strong gradients for diffusion MRI and where the field is headed in the coming years.


Asunto(s)
Conectoma , Encéfalo/diagnóstico por imagen , China , Conectoma/métodos , Imagen de Difusión por Resonancia Magnética/métodos , Imagen de Difusión Tensora/métodos , Humanos
8.
Neuroimage ; 243: 118530, 2021 11.
Artículo en Inglés | MEDLINE | ID: mdl-34464739

RESUMEN

The first phase of the Human Connectome Project pioneered advances in MRI technology for mapping the macroscopic structural connections of the living human brain through the engineering of a whole-body human MRI scanner equipped with maximum gradient strength of 300 mT/m, the highest ever achieved for human imaging. While this instrument has made important contributions to the understanding of macroscale connectional topology, it has also demonstrated the potential of dedicated high-gradient performance scanners to provide unparalleled in vivo assessment of neural tissue microstructure. Building on the initial groundwork laid by the original Connectome scanner, we have now embarked on an international, multi-site effort to build the next-generation human 3T Connectome scanner (Connectome 2.0) optimized for the study of neural tissue microstructure and connectional anatomy across multiple length scales. In order to maximize the resolution of this in vivo microscope for studies of the living human brain, we will push the diffusion resolution limit to unprecedented levels by (1) nearly doubling the current maximum gradient strength from 300 mT/m to 500 mT/m and tripling the maximum slew rate from 200 T/m/s to 600 T/m/s through the design of a one-of-a-kind head gradient coil optimized to minimize peripheral nerve stimulation; (2) developing high-sensitivity multi-channel radiofrequency receive coils for in vivo and ex vivo human brain imaging; (3) incorporating dynamic field monitoring to minimize image distortions and artifacts; (4) developing new pulse sequences to integrate the strongest diffusion encoding and highest spatial resolution ever achieved in the living human brain; and (5) calibrating the measurements obtained from this next-generation instrument through systematic validation of diffusion microstructural metrics in high-fidelity phantoms and ex vivo brain tissue at progressively finer scales with accompanying diffusion simulations in histology-based micro-geometries. We envision creating the ultimate diffusion MRI instrument capable of capturing the complex multi-scale organization of the living human brain - from the microscopic scale needed to probe cellular geometry, heterogeneity and plasticity, to the mesoscopic scale for quantifying the distinctions in cortical structure and connectivity that define cyto- and myeloarchitectonic boundaries, to improvements in estimates of macroscopic connectivity.


Asunto(s)
Conectoma/métodos , Imagen de Difusión por Resonancia Magnética/métodos , Encéfalo/diagnóstico por imagen , Femenino , Humanos , Masculino , Neuroimagen/métodos , Fantasmas de Imagen
9.
Med Phys ; 48(11): 6941-6961, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-34432901

RESUMEN

PURPOSE: To providea methodology that removes the spatial variability of in-plane resolution using different CT reconstructions. The methodology does not require any training, sinogram, or specific reconstruction method. METHODS: The methodology is formulated as a reconstruction problem. The desired sharp image is modeled as an unobservable variable to be estimated from an arbitrary number of observations with spatially variant resolution. The methodology comprises three steps: (1) density harmonization, which removes the density variability across reconstructions; (2) point spread function (PSF) estimation, which estimates a spatially variant PSF with arbitrary shape; (3) deconvolution, which is formulated as a regularized least squares problem. The assessment was performed with CT scans of phantoms acquired with three different Siemens scanners (Definition AS, Definition AS+, Drive). Four low-dose acquisitions reconstructed with backprojection and iterative methods were used for the resolution harmonization. A sharp, high-dose (HD) reconstruction was used as a validation reference. The different factors affecting the in-plane resolution (radial, angular, and longitudinal) were studied with regression analysis of the edge decay (between 10% and 90% of the edge spread function (ESF) amplitude). RESULTS: Results showed that the in-plane resolution improves remarkably and the spatial variability is substantially reduced without compromising the noise characteristics. The modulated transfer function (MTF) also confirmed a pronounced increase in resolution. The resolution improvement was also tested by measuring the wall thickness of tubes simulating airways. In all scanners, the resolution harmonization obtained better performance than the HD, sharp reconstruction used as a reference (up to 50 percentage points). The methodology was also evaluated in clinical scans achieving a noise reduction and a clear improvement in thin-layered structures. The estimated ESF and MTF confirmed the resolution improvement. CONCLUSION: We propose a versatile methodology to reduce the spatial variability of in-plane resolution in CT scans by leveraging different reconstructions available in clinical studies. The methodology does not require any sinogram, training, or specific reconstruction, and it is not limited to a fixed number of input images. Therefore, it can be easily adopted in multicenter studies and clinical practice. The results obtained with our resolution harmonization methodology evidence its suitability to reduce the spatially variant in-plane resolution in clinical CT scans without compromising the reconstruction's noise characteristics. We believe that the resolution increase achieved by our methodology may contribute in more accurate and reliable measurements of small structures such as vasculature, airways, and wall thickness.


Asunto(s)
Procesamiento de Imagen Asistido por Computador , Tomografía Computarizada por Rayos X , Algoritmos , Análisis de los Mínimos Cuadrados , Fantasmas de Imagen
10.
Neuroimage ; 238: 118256, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-34118399

RESUMEN

In vivo diffusion-weighted magnetic resonance imaging is limited in signal-to-noise-ratio (SNR) and acquisition time, which constrains spatial resolution to the macroscale regime. Ex vivo imaging, which allows for arbitrarily long scan times, is critical for exploring human brain structure in the mesoscale regime without loss of SNR. Standard head array coils designed for patients are sub-optimal for imaging ex vivo whole brain specimens. The goal of this work was to design and construct a 48-channel ex vivo whole brain array coil for high-resolution and high b-value diffusion-weighted imaging on a 3T Connectome scanner. The coil was validated with bench measurements and characterized by imaging metrics on an agar brain phantom and an ex vivo human brain sample. The two-segment coil former was constructed for a close fit to a whole human brain, with small receive elements distributed over the entire brain. Imaging tests including SNR and G-factor maps were compared to a 64-channel head coil designed for in vivo use. There was a 2.9-fold increase in SNR in the peripheral cortex and a 1.3-fold gain in the center when compared to the 64-channel head coil. The 48-channel ex vivo whole brain coil also decreases noise amplification in highly parallel imaging, allowing acceleration factors of approximately one unit higher for a given noise amplification level. The acquired diffusion-weighted images in a whole ex vivo brain specimen demonstrate the applicability and advantage of the developed coil for high-resolution and high b-value diffusion-weighted ex vivo brain MRI studies.


Asunto(s)
Encéfalo/diagnóstico por imagen , Conectoma , Imagen de Difusión por Resonancia Magnética/instrumentación , Diseño de Equipo , Humanos , Neuroimagen , Relación Señal-Ruido
11.
Magn Reson Med ; 86(3): 1614-1632, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-33834546

RESUMEN

PURPOSE: To introduce, develop, and evaluate a novel denoising technique for diffusion MRI that leverages nonlinear redundancy in the data to boost the SNR while preserving signal information. METHODS: We exploit nonlinear redundancy of the dMRI data by means of kernel principal component analysis (KPCA), a nonlinear generalization of PCA to reproducing kernel Hilbert spaces. By mapping the signal to a high-dimensional space, a higher level of redundant information is exploited, thereby enabling better denoising than linear PCA. We implement KPCA with a Gaussian kernel, with parameters automatically selected from knowledge of the noise statistics, and validate it on realistic Monte Carlo simulations as well as with in vivo human brain submillimeter and low-resolution dMRI data. We also demonstrate KPCA denoising on multi-coil dMRI data. RESULTS: SNR improvements up to 2.7 × were obtained in real in vivo datasets denoised with KPCA, in comparison to SNR gains of up to 1.8 × using a linear PCA denoising technique called Marchenko-Pastur PCA (MPPCA). Compared to gold-standard dataset references created from averaged data, we showed that lower normalized root mean squared error was achieved with KPCA compared to MPPCA. Statistical analysis of residuals shows that anatomical information is preserved and only noise is removed. Improvements in the estimation of diffusion model parameters such as fractional anisotropy, mean diffusivity, and fiber orientation distribution functions were also demonstrated. CONCLUSION: Nonlinear redundancy of the dMRI signal can be exploited with KPCA, which allows superior noise reduction/SNR improvements than the MPPCA method, without loss of signal information.


Asunto(s)
Algoritmos , Imagen de Difusión por Resonancia Magnética , Encéfalo/diagnóstico por imagen , Humanos , Análisis de Componente Principal , Relación Señal-Ruido
12.
Magn Reson Med ; 84(4): 1781-1795, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-32125020

RESUMEN

PURPOSE: To develop an accelerated, robust, and accurate diffusion MRI acquisition and reconstruction technique for submillimeter whole human brain in vivo scan on a clinical scanner. METHODS: We extend the ultra-high resolution diffusion MRI acquisition technique, gSlider, by allowing undersampling in q-space and radiofrequency (RF)-encoding space, thereby dramatically reducing the total acquisition time of conventional gSlider. The novel method, termed gSlider-SR, compensates for the lack of acquired information by exploiting redundancy in the dMRI data using a basis of spherical ridgelets (SR), while simultaneously enhancing the signal-to-noise ratio. Using Monte Carlo simulation with realistic noise levels and several acquisitions of in vivo human brain dMRI data (acquired on a Siemens Prisma 3T scanner), we demonstrate the efficacy of our method using several quantitative metrics. RESULTS: For high-resolution dMRI data with realistic noise levels (synthetically added), we show that gSlider-SR can reconstruct high-quality dMRI data at different acceleration factors preserving both signal and angular information. With in vivo data, we demonstrate that gSlider-SR can accurately reconstruct 860 µm diffusion MRI data (64 diffusion directions at b=2000s/mm2 ), at comparable quality as that obtained with conventional gSlider with four averages, thereby providing an eight-fold reduction in scan time (from 1 hour 20 to 10 minutes). CONCLUSIONS: gSlider-SR enables whole-brain high angular resolution dMRI at a submillimeter spatial resolution with a dramatically reduced acquisition time, making it feasible to use the proposed scheme on existing clinical scanners.


Asunto(s)
Imagen de Difusión por Resonancia Magnética , Procesamiento de Imagen Asistido por Computador , Encéfalo/diagnóstico por imagen , Humanos , Ondas de Radio , Relación Señal-Ruido
13.
IEEE Trans Med Imaging ; 37(11): 2414-2427, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-29993537

RESUMEN

In quantitative magnetic resonance mapping, the variable flip angle (VFA) steady state spoiled gradient recalled echo (SPGR) imaging technique is popular as it provides a series of high resolution weighted images in a clinically feasible time. Fast, linear methods that estimate maps from these weighted images have been proposed, such as DESPOT1 and iterative re-weighted linear least squares. More accurate, non-linear least squares (NLLS) estimators are in play, but these are generally much slower and require careful initialization. In this paper, we present NOVIFAST, a novel NLLS-based algorithm specifically tailored to VFA SPGR mapping. By exploiting the particular structure of the SPGR model, a computationally efficient, yet accurate and precise map estimator is derived. Simulation and in vivo human brain experiments demonstrate a twenty-fold speed gain of NOVIFAST compared with conventional gradient-based NLLS estimators while maintaining a high precision and accuracy. Moreover, NOVIFAST is eight times faster than the efficient implementations of the variable projection (VARPRO) method. Furthermore, NOVIFAST is shown to be robust against initialization.


Asunto(s)
Algoritmos , Procesamiento de Imagen Asistido por Computador/métodos , Imagen por Resonancia Magnética/métodos , Adulto , Encéfalo/diagnóstico por imagen , Humanos , Masculino , Fantasmas de Imagen
14.
IEEE Trans Med Imaging ; 36(5): 1041-1053, 2017 05.
Artículo en Inglés | MEDLINE | ID: mdl-28026759

RESUMEN

An important factor influencing the quality of magnetic resonance (MR) images is the reconstruction method that is employed, and specifically, the type of prior knowledge that is exploited during reconstruction. In this work, we introduce a new type of prior knowledge, partial discreteness (PD), where a small number of regions in the image are assumed to be homogeneous and can be well represented by a constant magnitude. In particular, we mathematically formalize the partial discreteness property based on a Gaussian Mixture Model (GMM) and derive a partial discreteness image representation that characterizes the salient features of partially discrete images: a constant intensity in homogeneous areas and texture in heterogeneous areas. The partial discreteness representation is then used to construct a novel prior dedicated to the reconstruction of partially discrete MR images. The strength of the proposed prior is demonstrated on various simulated and real k-space data-based experiments with partially discrete images. Results demonstrate that the PD algorithm performs competitively with state-of-the-art reconstruction methods, being flexible and easy to implement.


Asunto(s)
Imagen por Resonancia Magnética , Algoritmos , Bases de Datos Factuales , Procesamiento de Imagen Asistido por Computador
15.
IEEE Trans Med Imaging ; 36(2): 433-446, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-27662674

RESUMEN

In quantitative MR T1 mapping, the spin-lattice relaxation time T1 of tissues is estimated from a series of T1 -weighted images. As the T1 estimation is a voxel-wise estimation procedure, correct spatial alignment of the T1 -weighted images is crucial. Conventionally, the T1 -weighted images are first registered based on a general-purpose registration metric, after which the T1 map is estimated. However, as demonstrated in this paper, such a two-step approach leads to a bias in the final T1 map. In our work, instead of considering motion correction as a preprocessing step, we recover the motion-free T1 map using a unified estimation approach. In particular, we propose a unified framework where the motion parameters and the T1 map are simultaneously estimated with a Maximum Likelihood (ML) estimator. With our framework, the relaxation model, the motion model as well as the data statistics are jointly incorporated to provide substantially more accurate motion and T1 parameter estimates. Experiments with realistic Monte Carlo simulations show that the proposed unified ML framework outperforms the conventional two-step approach as well as state-of-the-art model-based approaches, in terms of both motion and T1 map accuracy and mean-square error. Furthermore, the proposed method was additionally validated in a controlled experiment with real T1 -weighted data and with two in vivo human brain T1 -weighted data sets, showing its applicability in real-life scenarios.


Asunto(s)
Imagen por Resonancia Magnética , Algoritmos , Humanos , Funciones de Verosimilitud , Método de Montecarlo , Movimiento (Física) , Reproducibilidad de los Resultados
16.
IEEE Trans Image Process ; 24(1): 345-58, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25415987

RESUMEN

Ultrasound (US) imaging exhibits considerable difficulties for medical visual inspection and for development of automatic analysis methods due to speckle, which negatively affects the perception of tissue boundaries and the performance of automatic segmentation methods. With the aim of alleviating the effect of speckle, many filtering techniques are usually considered as a preprocessing step prior to automatic analysis methods or visual inspection. Most of the state-of-the-art filters try to reduce the speckle effect without considering its relevance for the characterization of tissue nature. However, the speckle phenomenon is the inherent response of echo signals in tissues and can provide important features for clinical purposes. This loss of information is even magnified due to the iterative process of some speckle filters, e.g., diffusion filters, which tend to produce over-filtering because of the progressive loss of relevant information for diagnostic purposes during the diffusion process. In this paper, we propose an anisotropic diffusion filter with a probabilistic-driven memory mechanism to overcome the over-filtering problem by following a tissue selective philosophy. In particular, we formulate the memory mechanism as a delay differential equation for the diffusion tensor whose behavior depends on the statistics of the tissues, by accelerating the diffusion process in meaningless regions and including the memory effect in regions where relevant details should be preserved. Results both in synthetic and real US images support the inclusion of the probabilistic memory mechanism for maintaining clinical relevant structures, which are removed by the state-of-the-art filters.


Asunto(s)
Procesamiento de Imagen Asistido por Computador/métodos , Modelos Estadísticos , Ultrasonografía/métodos , Difusión , Humanos , Riñón/diagnóstico por imagen , Fantasmas de Imagen , Ultrasonografía Intervencional
17.
Artículo en Inglés | MEDLINE | ID: mdl-24110347

RESUMEN

Recently, some methods have been proposed for filtering multi-coil MRI acquisitions with correlation between coils. Those methods are based on statistical models of noise to develop a Linear Minimum Mean Square Error (LMMSE) filter. The advantage of LMMSE-based filters stems from their simplicity and robustness. However, they exhibit some drawbacks: their performance strongly depends on the underlying statistical model and on the way the local moments are estimated. The first problem can be avoided when considering effective values provided by recent studies on the models of noise in multi-coil systems with correlation between coils. However, the local moments are estimated in square neighborhoods which can include different kinds of tissues. Thus, the local variance is biased towards upper values, which results in an inaccurate estimate in regions close to tissue boundaries. In this work we propose to overcome this problem by introducing an anisotropic diffusion step in the LMMSE estimate for correlated multi-coil systems which improves the estimation of the signal in regions where other LMMSE methods fail. Results demonstrate the better behavior in different noisy scenarios.


Asunto(s)
Algoritmos , Difusión , Imagen por Resonancia Magnética/instrumentación , Anisotropía , Artefactos , Encéfalo/fisiología , Simulación por Computador , Fantasmas de Imagen , Reproducibilidad de los Resultados
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