Effects of lianas on forest biogeochemistry during their lives and afterlives.

Climate change and other anthropogenic disturbances are increasing liana abundance and biomass in many tropical and subtropical forests. While the effects of living lianas on species diversity, ecosystem carbon, and nutrient dynamics are receiving increasing attention, the role of dead lianas in forest ecosystems has been little studied and is poorly understood. Trees and lianas coexist as the major woody components of forests worldwide, but they have very different ecological strategies, with lianas relying on trees for mechanical support. Consequently, trees and lianas have evolved highly divergent stem, leaf, and root traits. Here we show that this trait divergence is likely to persist after death, into the afterlives of these organs, leading to divergent effects on forest biogeochemistry. We introduce a conceptual framework combining horizontal, vertical, and time dimensions for the effects of liana proliferation and liana tissue decomposition on ecosystem carbon and nutrient cycling. We propose a series of empirical studies comparing traits between lianas and trees to answer questions concerning the influence of trait afterlives on the decomposability of liana and tree organs. Such studies will increase our understanding of the contribution of lianas to terrestrial biogeochemical cycling, and help predict the effects of their increasing abundance.

Chromosome-level reference genome of the soursop (Annona muricata): A new resource for Magnoliid research and tropical pomology.

The flowering plant family Annonaceae includes important commercially grown tropical crops, but development of promising species is hindered by a lack of genomic resources to build breeding programs. Annonaceae are part of the magnoliids, an ancient lineage of angiosperms for which evolutionary relationships with other major clades remain unclear. To provide resources to breeders and evolutionary researchers, we report a chromosome-level genome assembly of the soursop (Annona muricata). We assembled the genome using 444.32 Gb of DNA sequences (676× sequencing depth) from PacBio and Illumina short-reads, in combination with 10× Genomics and Bionano data (v1). A total of 949 scaffolds were assembled to a final size of 656.77 Mb, with a scaffold N50 of 3.43 Mb (v1), and then further improved to seven pseudo-chromosomes using Hi-C sequencing data (v2; scaffold N50: 93.2 Mb, total size in chromosomes: 639.6 Mb). Heterozygosity was very low (0.06%), while repeat sequences accounted for 54.87% of the genome, and 23,375 protein-coding genes with an average of 4.79 exons per gene were annotated using de novo, RNA-seq and homology-based approaches. Reconstruction of the historical population size showed a slow continuous contraction, probably related to Cenozoic climate changes. The soursop is the first genome assembled in Annonaceae, supporting further studies of floral evolution in magnoliids, providing an essential resource for delineating relationships of ancient angiosperm lineages. Both genome-assisted improvement and conservation efforts will be strengthened by the availability of the soursop genome. As a community resource, this assembly will further strengthen the role of Annonaceae as model species for research on the ecology, evolution and domestication potential of tropical species in pomology and agroforestry.

Trees represent community composition of other plant life-forms, but not their diversity, abundance or responses to fragmentation.

Our understanding of the patterns of plant diversity in tropical forests and their responses to fragmentation are mostly based on tree surveys. But are these patterns and responses representative of other plant life-forms? We sampled trees, lianas, herbs, and ferns in a fragmented tropical forest landscape in South-west China. We compared community types generated by clustering presence-absence data for the non-tree life-forms with those generated for trees. We tested how well measures of tree diversity, density and composition, predicted cognate indices in other life-forms. We compared fragmentation responses, with respect to the three measures, of all four life-forms. Presence-absence data from all life-forms generated three community clusters, with only small differences between classifications, suggesting that tree data identified community types representative of all vascular plant life-forms. Tree species diversity and density indices poorly predicted cognate indices of lianas and ferns, but represented herbs well. However, the slopes of these relationships differed substantially between community types. All life-forms responded to fragmentation variables but their responses did not consistently match with responses of trees. Plot-level tree data can identify vegetation community types, but is poorly representative of the richness and density of other life-forms, and poorly represents forest fragmentation responses for the entire plant community.

Seed and Germination Characteristics of 20 Amazonian Liana Species.

Lianas are an important component of tropical forests, and may reach their highest densities in disturbed areas. However, information on seed and germination characteristics is scarce. Twenty Amazon liana species were screened for their germination characteristics, including light dependence, tolerance of desiccation and of alternating temperatures; these characteristics are considered important for the germination success in areas with relatively open canopies. Between 31-1,420 seeds per species were available, as 15 species seeds came from one mother plant. We studied seed biometry and conducted germination trials with fresh seeds (12 h light daily, or dark) and desiccated seeds at 25 °C. Germination at alternating temperatures (20/30 °C, 15/35 °C) was analyzed for nine species. Of the 20 species, eight species with the largest seeds had desiccation sensitive seeds; this is the first record for species of four genera and one family, where only desiccation tolerant seeds are otherwise recorded. Light-dependent germination was found in three species (0.01-0.015 g) and is the first record for two; however, results were based on seeds from one plant per species. Alternating temperatures of 15/35 °C decreased final germination of four out of nine species, and response to 20/30 °C cycles varied compared to constant 25 °C. Seed and germination characteristics of the species ranged from pioneer to climax traits indicating that establishment of lianas from seeds may be confined to species specific niches.

Is palatability of a root-hemiparasitic plant influenced by its host species?

Palatability of parasitic plants may be influenced by their host species, because the parasites take up nutrients and secondary compounds from the hosts. If parasitic plants acquired the full spectrum of secondary compounds from their host, one would expect a correlation between host and parasite palatability. We examined the palatability of leaves of the root-hemiparasite Melampyrum arvense grown with different host plants and the palatability of these host plants for two generalist herbivores, the caterpillar of Spodoptera littoralis and the slug Arion lusitanicus. We used 19 species of host plants from 11 families that are known to contain a wide spectrum of anti-herbivore compounds. Growth of M. arvense was strongly influenced by the host species. The palatability of the individual host species for the two herbivores differed strongly. Both A. lusitanicus and S. littoralis discriminated also between hemiparasites grown with different host plants. There was no correlation between the palatability of a host species and that of the parasites grown on that host, i.e., hemiparasites grown on palatable host species were not more palatable than those grown on unpalatable hosts. We suggest an interacting pattern of specific effects of chemical anti-herbivore defences and indirect effects of the hosts on herbivores through effects on growth and tissue quality of the parasites.