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1.
Chem Sci ; 15(14): 5268-5276, 2024 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-38577353

RESUMEN

Metal-organic frameworks (MOFs) draw increasing attention as nanoenvironments for chemical reactions, especially in the field of catalysis. Knowing the specifics of MOF cavities is decisive in many of these cases; yet, obtaining them in situ remains very challenging. We report the first direct assessment of the apparent polarity and solvent organization inside MOF cavities using a dedicated structurally flexible spin probe. A stable ß-phosphorylated nitroxide radical was incorporated into the cavities of a prospective MOF ZIF-8 in trace amounts. The spectroscopic properties of this probe depend on local polarity, structuredness, stiffness and cohesive pressure and can be precisely monitored by Electron Paramagnetic Resonance (EPR) spectroscopy. Using this approach, we have demonstrated experimentally that the cavities of bare ZIF-8 are sensed by guest molecules as highly non-polar inside. When various alcohols fill the cavities, remarkable self-organization of solvent molecules is observed leading to a higher apparent polarity in MOFs compared to the corresponding bulk alcohols. Accounting for such nanoorganization phenomena can be crucial for optimization of chemical reactions in MOFs, and the proposed methodology provides unique routes to study MOF cavities inside in situ, thus aiding in their various applications.

2.
Biology (Basel) ; 11(12)2022 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-36552218

RESUMEN

Multiple stressors related to changes in environmental conditions (such as water temperature, salinity, and natural and anthropogenic pollution) may cause biological responses of aquatic organisms that lead to significant variations in the biochemical reactions in their tissues and thereby change the concentrations of metabolites. We used a quantitative NMR-based metabolomic analysis of the fish lens for the evaluation of the influence of environmental factors on metabolic processes in aquatic animals. For this purpose, three species of freshwater fish-Perca fluviatilis, Rutilus rutilus lacustris, and Gymnocephalus cernua-were caught at approximately the same time at three locations in Siberia (Russia) that differed in levels of dissolved oxygen (LDO) and water purity, and the concentrations of 57 major metabolites in the fish lenses were determined. We found that the metabolomic profiles of the fish lenses strongly depended on the location. The obtained data demonstrated that two typical stressors for aquatic animals-a reduced LDO and anthropogenic water pollution-caused a largely similar metabolic response in the fish lenses that led to an increase in the concentrations of several amino acids and a decrease in sarcosine and phosphoethanolamine. At the same time, the composition of the major lens osmolytes depended mostly on the oxygen level, while variations in AMP (decrease) and NAD (increase) corresponded to the water pollution. We suggest that the eye lens is a very convenient tissue for studying the impact of ecological factors on the metabolic state of aquatic animals, fish in particular.

3.
Magn Reson (Gott) ; 2(1): 139-148, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-37904760

RESUMEN

Flavin adenine dinucleotide (FAD) is an important cofactor in many light-sensitive enzymes. The role of the adenine moiety of FAD in light-induced electron transfer was obscured, because it involves an adenine radical, which is short-lived with a weak chromophore. However, an intramolecular electron transfer from adenine to flavin was revealed several years ago by Robert Kaptein by using chemically induced dynamic nuclear polarization (CIDNP). The question of whether one or two types of biradicals of FAD in aqueous solution are formed stays unresolved so far. In the present work, we revisited the CIDNP study of FAD using a robust mechanical sample shuttling setup covering a wide magnetic field range with sample illumination by a light-emitting diode. Also, a cost efficient fast field cycling apparatus with high spectral resolution detection up to 16.4 T for nuclear magnetic relaxation dispersion studies was built based on a 700 MHz NMR spectrometer. Site-specific proton relaxation dispersion data for FAD show a strong restriction of the relative motion of its isoalloxazine and adenine rings with coincident correlation times for adenine, flavin, and their ribityl phosphate linker. This finding is consistent with the assumption that the molecular structure of FAD is rigid and compact. The structure with close proximity of the isoalloxazine and purine moieties is favorable for reversible light-induced intramolecular electron transfer from adenine to triplet excited flavin with formation of a transient spin-correlated triplet biradical F⚫--A⚫+. Spin-selective recombination of the biradical leads to the formation of CIDNP with a common emissive maximum at 4.0 mT detected for adenine and flavin protons. Careful correction of the CIDNP data for relaxation losses during sample shuttling shows that only a single maximum of CIDNP is formed in the magnetic field range from 0.1 mT to 9 T; thus, only one type of FAD biradical is detectable. Modeling of the CIDNP field dependence provides good agreement with the experimental data for a normal distance distribution between the two radical centers around 0.89 nm and an effective electron exchange interaction of -2.0 mT.

4.
Sci Rep ; 10(1): 18658, 2020 10 29.
Artículo en Inglés | MEDLINE | ID: mdl-33122681

RESUMEN

The solid-state photo-chemically induced dynamic nuclear polarization (photo-CIDNP) effect generates non-Boltzmann nuclear spin magnetization, referred to as hyperpolarization, allowing for high gain of sensitivity in nuclear magnetic resonance (NMR). Well known to occur in photosynthetic reaction centers, the effect was also observed in a light-oxygen-voltage (LOV) domain of the blue-light receptor phototropin, in which the functional cysteine was removed to prevent photo-chemical reactions with the cofactor, a flavin mononucleotide (FMN). Upon illumination, the FMN abstracts an electron from a tryptophan to form a transient spin-correlated radical pair (SCRP) generating the photo-CIDNP effect. Here, we report on designed molecular spin-machines producing nuclear hyperpolarization upon illumination: a LOV domain of aureochrome1a from Phaeodactylum tricornutum, and a LOV domain named 4511 from Methylobacterium radiotolerans (Mr4511) which lacks an otherwise conserved tryptophan in its wild-type form. Insertion of the tryptophan at canonical and novel positions in Mr4511 yields photo-CIDNP effects observed by 15N and 1H liquid-state high-resolution NMR with a characteristic magnetic-field dependence indicating an involvement of anisotropic magnetic interactions and a slow-motion regime in the transient paramagnetic state. The heuristic biomimetic design opens new categories of experiments to analyze and apply the photo-CIDNP effect.

5.
J Chem Phys ; 152(3): 034103, 2020 Jan 21.
Artículo en Inglés | MEDLINE | ID: mdl-31968965

RESUMEN

Magnetic Field Effects (MFEs) on the recombination of radicals, which diffuse on an infinite plane, are studied theoretically. The case of spin-selective diffusion-controlled recombination of Radical Pairs (RPs) starting from a random spin state is considered assuming uniform initial distribution of the radicals. In this situation, reaction kinetics is described by a time-dependent rate coefficient K(t), which tends to zero at long times. Strong MFEs on K(t) are predicted that originate from the Δg and hyperfine driven singlet-triplet mixing in the RP. The effects of spin relaxation on the magnetic field are studied, as well as the influence of the dipole-dipole interaction between the electron spins of the RP. In the two-dimensional case, this interaction is not averaged out by diffusion and it strongly affects the MFE. The results of this work are of importance for interpreting MFEs on lipid peroxidation, a magnetosensitive process occurring on two-dimensional surfaces of cell membranes.

6.
Sci Rep ; 9(1): 18436, 2019 12 05.
Artículo en Inglés | MEDLINE | ID: mdl-31804538

RESUMEN

The solid-state photo-chemically induced dynamic nuclear polarization (photo-CIDNP) effect generates non-equilibrium nuclear spin polarization in frozen electron-transfer proteins upon illumination and radical-pair formation. The effect can be observed in various natural photosynthetic reaction center proteins using magic-angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy, and in a flavin-binding light-oxygen-voltage (LOV) domain of the blue-light receptor phototropin. In the latter system, a functionally instrumental cysteine has been mutated to interrupt the natural cysteine-involving photochemistry allowing for an electron transfer from a more distant tryptophan to the excited flavin mononucleotide chromophore. We explored the solid-state photo-CIDNP effect and its mechanisms in phototropin-LOV1-C57S from the green alga Chlamydomonas reinhardtii by using field-cycling solution NMR. We observed the 13C and, to our knowledge, for the first time, 15N photo-CIDNP signals from phototropin-LOV1-C57S. Additionally, the 1H photo-CIDNP signals of residual water in the deuterated buffer of the protein were detected. The relative strengths of the photo-CIDNP effect from the three types of nuclei, 1H, 13C and 15N were measured in dependence of the magnetic field, showing their maximum polarizations at different magnetic fields. Theoretical level crossing analysis demonstrates that anisotropic mechanisms play the dominant role at high magnetic fields.

7.
Metabolites ; 9(11)2019 Nov 02.
Artículo en Inglés | MEDLINE | ID: mdl-31684114

RESUMEN

This work represents the first comprehensive report on quantitative metabolomic composition of tissues of pike-perch (Sander lucioperca) and Siberian roach (Rutilus rutilus lacustris). The total of 68 most abundant metabolites are identified and quantified in the fish lenses and gills by the combination of LC-MS and NMR. It is shown that the concentrations of some compounds in the lens are much higher than that in the gills; that indicates the importance of these metabolites for the adaptation to the specific living conditions and maintaining the homeostasis of the fish lens. The lens metabolome undergoes significant seasonal changes due to the variations of dissolved oxygen level and fish feeding activity. The most season-affected metabolites are osmolytes and antioxidants, and the most affected metabolic pathway is the histidine pathway. In late autumn, the major lens osmolytes are N-acetyl-histidine and threonine phosphoethanolamine (Thr-PETA), while in winter the highest concentrations were observed for serine phosphoethanolamine (Ser-PETA) and myo-inositol. The presence of Thr-PETA and Ser-PETA in fish tissues and their role in cell osmotic protection are reported for the first time. The obtained concentrations can be used as baseline levels for studying the influence of environmental factors on fish health.

8.
J Proteome Res ; 18(12): 4206-4214, 2019 12 06.
Artículo en Inglés | MEDLINE | ID: mdl-31599598

RESUMEN

This manuscript collects all the efforts of the Russian Consortium, bottlenecks revealed in the course of the C-HPP realization, and ways of their overcoming. One of the main bottlenecks in the C-HPP is the insufficient sensitivity of proteomic technologies, hampering the detection of low- and ultralow-copy number proteins forming the "dark part" of the human proteome. In the frame of MP-Challenge, to increase proteome coverage we suggest an experimental workflow based on a combination of shotgun technology and selected reaction monitoring with two-dimensional alkaline fractionation. Further, to detect proteins that cannot be identified by such technologies, nanotechnologies such as combined atomic force microscopy with molecular fishing and/or nanowire detection may be useful. These technologies provide a powerful tool for single molecule analysis, by analogy with nanopore sequencing during genome analysis. To systematically analyze the functional features of some proteins (CP50 Challenge), we created a mathematical model that predicts the number of proteins differing in amino acid sequence: proteoforms. According to our data, we should expect about 100 000 different proteoforms in the liver tissue and a little more in the HepG2 cell line. The variety of proteins forming the whole human proteome significantly exceeds these results due to post-translational modifications (PTMs). As PTMs determine the functional specificity of the protein, we propose using a combination of gene-centric transcriptome-proteomic analysis with preliminary fractionation by two-dimensional electrophoresis to identify chemically modified proteoforms. Despite the complexity of the proposed solutions, such integrative approaches could be fruitful for MP50 and CP50 Challenges in the framework of the C-HPP.


Asunto(s)
Proteínas/análisis , Proteoma , Proteómica/métodos , Técnicas Biosensibles , Electroforesis en Gel Bidimensional , Genoma Humano , Humanos , Microscopía de Fuerza Atómica/métodos , Nanotecnología/métodos , Procesamiento Proteico-Postraduccional , Proteínas/aislamiento & purificación , Federación de Rusia , Sensibilidad y Especificidad , Espectrometría de Masa por Ionización de Electrospray , Espectrometría de Masas en Tándem , Flujo de Trabajo
9.
Metabolomics ; 15(6): 84, 2019 05 24.
Artículo en Inglés | MEDLINE | ID: mdl-31127446

RESUMEN

INTRODUCTION: Quantification of metabolites in biological fluids and tissues by NMR spectroscopy is challenged by the presence of abundant macromolecules and lipoproteins in samples, which give broad signals in the NMR spectra. To improve the quality of NMR spectra the different protocols for protein and lipid removal from the sample are used. OBJECTIVES: This work is aimed at the evaluation of the effectiveness of various methods of purification of blood serum from proteins and lipids for 1H NMR metabolomic profiling. METHODS: The advantages and limitations of different methods of the sample preparation for NMR-based quantitative metabolomics have been compared, including ultrafiltration, methanol and ethanol extractions with and without additional lipid removal, and methanol-chloroform extraction. RESULTS: The concentrations of 30 abundant metabolites extracted from human blood serum have been measured. It is found that ultrafiltration provides the best lipid removal, but causes significant and inhomogeneous metabolite losses. Ethanol and methanol extractions demonstrate similar performance with the minimal metabolite losses, and are ideal for fluids and tissues with low lipid content. The additional purification of alcohol extracts from lipids allows for the significant improving of NMR spectra, but causes additional metabolite losses. CONCLUSIONS: The methanol-chloroform extraction seems to be an optimal method for tissues with the high lipid content, providing a satisfactory lipid removal and low metabolite losses. The ultrafiltration leads to large losses of metabolites (up to 60%) and for this reason is not suitable for quantitative analysis.


Asunto(s)
Cristalino/metabolismo , Espectroscopía de Resonancia Magnética/métodos , Metaboloma , Metabolómica/métodos , Suero/metabolismo , Fraccionamiento Químico/métodos , Humanos , Cristalino/química , Suero/química , Ultrafiltración/métodos
10.
J Chem Phys ; 150(6): 064201, 2019 Feb 14.
Artículo en Inglés | MEDLINE | ID: mdl-30769975

RESUMEN

A method is implemented to perform "fast" adiabatic variation of the spin Hamiltonian by imposing the constant adiabaticity condition. The method is applied to improve the performance of singlet-state Nuclear Magnetic Resonance (NMR) experiments, specifically, for efficient generation and readout of the singlet spin order in coupled spin pairs by applying adiabatically ramped RF-fields. Test experiments have been performed on a specially designed molecule having two strongly coupled 13C spins and on selectively isotopically labelled glycerol having two pairs of coupled protons. Optimized RF-ramps show improved performance in comparison, for example, to linear ramps. We expect that the methods described here are useful not only for singlet-state NMR experiments but also for other experiments in magnetic resonance, which utilize adiabatic variation of the spin Hamiltonian.

11.
Dalton Trans ; 46(38): 13108-13117, 2017 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-28944812

RESUMEN

Molecular magnets based on copper(ii) ions and stable nitroxide radicals exhibit promising switchable behavior triggered by a number of external stimuli; however, their spin-state-correlated optical properties vital for photoinduced switching have not been profoundly investigated to date. Herein, the electronic absorption spectra of single crystals of three representatives of this unique family are studied experimentally and theoretically in the visible and near-IR regions. We established that the color of the complexes is mainly determined by optical properties of the nitroxide radicals, whereas the Cu(hfac)2 fragment contributes to the near-IR range with the intensity smaller by an order of magnitude. The thermochromism of these complexes evident upon thermal spin state switching is mainly caused by a spectral shift of the absorption bands of the nitroxides. The vibrational progression observed in the visible range for single crystals as well as for solutions of pure nitroxides is well reproduced by DFT calculations, where the C-C stretching mode governs the observed progression. The analysis of the spectra of single crystals in the near-IR region reveals changes in the energy and in the intensity of the copper(ii) d-d transitions, which are well reproduced by SOC-NEVPT2 calculations and owe to the flip of the Jahn-Teller axis in the coordination environment of copper. Further strategies for designing bidirectional magnetic photoswitches using these appealing compounds are discussed.

12.
Inorg Chem ; 54(7): 3446-55, 2015 Apr 06.
Artículo en Inglés | MEDLINE | ID: mdl-25760727

RESUMEN

"Breathing crystals" based on copper(II) hexafluoroacetylacetonates and pyrazolyl-substituted nitronyl nitroxides comprise the exchange-coupled clusters within the polymeric chains. Owing to an interplay of exchange interaction between copper(II) and nitroxide spins and Jahn-Teller nature of copper(II) complex, the breathing crystals demonstrate thermally and light-induced magnetostructural transitions in many aspects similar to the classical spin crossover. Herewith, we report the first application of variable temperature (VT) far/mid Fourier transform infrared (FTIR) spectroscopy and mid FTIR microscopy to breathing crystals. This VT-FTIR study was aimed toward clarification of the transitions mechanism previously debated on the basis of superconducting quantum interference device, X-ray diffraction, and electron paramagnetic resonance data. VT-FTIR showed the onset of new vibrational bands during phase transitions occurring at the expense of several existing ones, whose intensity was significantly reduced. The most pronounced spectral changes were assigned to corresponding vibrational modes using quantum chemical calculations. A clear-cut correlation was found between temperature-dependent effective magnetic moment of studied compounds and the observed VT-FTIR spectra. Importantly, VT-FTIR confirmed coexistence of two types of copper(II)-nitroxide clusters during gradual magnetostructural transition. Such clusters correspond to weakly coupled and strongly coupled spin states, whose relative contribution depends on temperature. The pronounced difference in the VT-FTIR spectra of two states in breathing crystals is a fingerprint of magnetostructural transition, and understanding of these characteristics achieved by us will be useful for future studies of breathing crystals as well as their diamagnetic analogues.

13.
Exp Eye Res ; 134: 15-23, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25773987

RESUMEN

Quantitative metabolomic profiles of normal and cataractous human lenses were obtained with the combined use of high-frequency nuclear magnetic resonance (NMR) and high-performance liquid chromatography with high-resolution mass-spectrometric detection (LC-MS) methods. The concentration of more than fifty metabolites in the lens cortex and nucleus has been determined. For the majority of metabolites, their concentrations in the lens cortex and nucleus are similar, which confirms low metabolic activity in the lens core. The difference between the metabolite levels in the cortex and nucleus of the normal lens is observed for antioxidants and UV filters, which demonstrates the activity of redox processes in the lens. A huge difference is found between the metabolomic compositions of normal and age-matched cataractous lenses: the concentrations of almost all metabolites in the normal lens are higher than in the cataractous one. The most pronounced difference is observed for compounds playing a key role in the lens cell protection and metabolic activity, including antioxidants, UV filters, and osmolytes. The results obtained imply that the development of the age-related cataracts might originate from the metabolic dysfunction of the lens epithelial cells.


Asunto(s)
Envejecimiento/fisiología , Catarata/metabolismo , Proteínas del Ojo/metabolismo , Cristalino/metabolismo , Metaboloma/fisiología , Anciano , Cromatografía Líquida de Alta Presión , Humanos , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Metabolómica/métodos , Persona de Mediana Edad , Donantes de Tejidos
14.
J Am Chem Soc ; 136(28): 10132-8, 2014 Jul 16.
Artículo en Inglés | MEDLINE | ID: mdl-24960618

RESUMEN

Most photoswitchable molecular magnets exhibit thermally induced switching, as is typical of spin crossover (SCO), valence tautomerism and SCO-like phenomena. We report a rare case of a copper-nitroxide based molecular magnet Cu(hfac)2L(i-Pr) that does not exhibit quantitative SCO-like behavior in the temperature range of its chemical stability (2-350 K); however, it can be switched to a metastable thermally inaccessible spin state via visible/near-IR light at cryogenic temperatures. By means of photogeneration, unique information on this otherwise unobservable spin state has been obtained using steady-state Q-band (34 GHz) and time-resolved W-band (94 GHz) electron paramagnetic resonance (EPR) spectroscopy. In particular, we have found that the electronic structure and relaxation properties of the photoinduced state in Cu(hfac)2L(i-Pr) are very similar to those in its sister compound Cu(hfac)2L(n-Pr) that is thermally switchable and has been exhaustively characterized by many analytical methods, previously. The first observation of photoswitchable behavior in a thermally unswitchable copper-nitroxide based molecular magnet Cu(hfac)2L(i-Pr) paves the way for photoswitching applications of this and similar compounds in the remarkably broad temperature range of 2-350 K.

15.
Exp Eye Res ; 125: 71-8, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24910091

RESUMEN

This work is the first comprehensive report on the quantitative metabolomic composition of the rat lens. Quantitative metabolomic profiles of lenses were acquired with the combined use of high-frequency nuclear magnetic resonance (NMR) and high-performance liquid chromatography with high-resolution mass-spectrometric detection (LC-MS) methods. More than forty low molecular weight compounds found in the lens have been reliably identified and quantified. The most abundant metabolites in the 3-month-old Wistar rat lens are taurine, hypotaurine, lactate, phosphocholine and reduced glutathione. The analysis of age-related changes in the lens metabolomic composition shows a gradual decrease of the content of most metabolites. This decrease is the most pronounced between 1 and 3 months, which probably corresponds to the completion of the lens maturation in one-month-old rats and to the high rate of the young lens growth. The enhanced levels of tryptophan, tyrosine, carnitine, glycerophosphate, GSH and GSSG were found in lenses of senescence-accelerated OXYS rats; for some metabolites, this effect may probably be attributed to the compensatory response to oxidative stress.


Asunto(s)
Cromatografía Liquida/métodos , Cristalino/metabolismo , Espectroscopía de Resonancia Magnética/métodos , Espectrometría de Masas/métodos , Metabolómica/métodos , Envejecimiento/metabolismo , Envejecimiento Prematuro/metabolismo , Animales , Proteínas del Ojo/metabolismo , Ratas Wistar
16.
J Phys Chem Lett ; 5(1): 20-4, 2014 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-26276175

RESUMEN

Reversible structural rearrangements ("breathing") of metal-organic frameworks (MOFs) are interesting and complex phenomena with many potential applications. They are often triggered by small amounts of adsorbed guest molecules; therefore, the guest-host interactions in breathing MOFs are intensively investigated. Due to the sensitivity limitations, most analytical methods require relatively high concentrations of guests in these studies. However, because guest molecules are not "innocent", breathing behavior may become suppressed and unperturbed structural states inaccessible. We propose here the use of guest nitroxide molecules in tiny concentrations (such as 1 molecule per 1000 unit cells), which serve as spin probes for electron paramagnetic resonance (EPR), for effective study of breathing phenomena in MOFs. Using a perspective MIL-53(Al) framework as an example, we demonstrate the great advantage of this general approach, which avoids perturbation of the framework structure and allows in-depth investigation of guest-host interactions in the breathing mode.

17.
Mol Vis ; 19: 2196-208, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24227915

RESUMEN

PURPOSE: To determine age-related changes in the composition of the urea-soluble (US) protein fraction from lenses of senescence-accelerated OXYS (cataract model) and Wistar (control) rats and to establish posttranslational modifications (PTMs) occurring under enhanced oxidative stress in OXYS lenses. METHODS: The identity and the relative abundance of crystallins in the US fractions were determined using two-dimensional gel electrophoresis (2-DE) and matrix-assisted laser desorption ionization-time of flight mass spectrometry (MS). The identities and the positions of PTMs were established using MS/MS measurements. RESULTS: Two-dimensional gel electrophoresis maps of US protein fractions were obtained for lenses of 3-, 12-, and 62-week-old Wistar and OXYS rats, and the relative abundance of different isoforms of α-, ß-, and γ-crystallins was determined. ß-Crystallins were the major contributor of the US fraction in 3-week-old lenses (above 50%), γ-crystallins in 12-week-old lenses (50-60%), and in 62-week-old lenses, the contributions from all three crystallin families leveled out. The major interstrain difference was the elevated level of α-crystallins in the US fraction from 12-week-old OXYS lenses. Spots with increased relative abundance in OXYS maps were attributed to the cataract-specific spots of interest. The crystallins from these spots were subjected to MS/MS analysis, and the positions of acetylation, oxidation, deamidation, and phosphorylation were established. CONCLUSIONS: The increased relative abundance of α-crystallins in the US fraction from 12-week-old OXYS lenses points to the fast insolubilization of α-crystallins under oxidative stress. Most of the PTMs attributed to the cataract-specific modifications also correspond to α-crystallins. These PTMs include oxidation of methionine residues, deamidation of asparagine and glutamine residues, and phosphorylation of serine and threonine residues.


Asunto(s)
Catarata/metabolismo , Proteínas del Ojo/metabolismo , Cristalino/metabolismo , Procesamiento Proteico-Postraduccional , Urea/farmacología , Acetilación/efectos de los fármacos , Secuencia de Aminoácidos , Aminoácidos/metabolismo , Animales , Catarata/patología , Fraccionamiento Químico , Cristalinas/química , Cristalinas/metabolismo , Electroforesis en Gel Bidimensional , Humanos , Cristalino/patología , Datos de Secuencia Molecular , Oxidación-Reducción/efectos de los fármacos , Estrés Oxidativo/efectos de los fármacos , Fosforilación/efectos de los fármacos , Procesamiento Proteico-Postraduccional/efectos de los fármacos , Ratas , Ratas Wistar , Solubilidad/efectos de los fármacos , Espectrometría de Masas en Tándem
18.
Nat Commun ; 4: 2469, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24036685

RESUMEN

The microbial community of the human gut has a crucial role in sustaining host homeostasis. High-throughput DNA sequencing has delineated the structural and functional configurations of gut metagenomes in world populations. The microbiota of the Russian population is of particular interest to researchers, because Russia encompasses a uniquely wide range of environmental conditions and ethnogeographical cohorts. Here we conduct a shotgun metagenomic analysis of gut microbiota samples from 96 healthy Russian adult subjects, which reveals novel microbial community structures. The communities from several rural regions display similarities within each region and are dominated by the bacterial taxa associated with the healthy gut. Functional analysis shows that the metabolic pathways exhibiting differential abundance in the novel types are primarily associated with the trade-off between the Bacteroidetes and Firmicutes phyla. The specific signatures of the Russian gut microbiota are likely linked to the host diet, cultural habits and socioeconomic status.


Asunto(s)
Tracto Gastrointestinal/microbiología , Microbiota , Población Rural , Población Urbana , Adulto , Análisis por Conglomerados , Dinamarca , Femenino , Geografía , Humanos , Masculino , Metabolismo , Metagenoma/genética , Microbiota/genética , Federación de Rusia , Estados Unidos
19.
J Phys Chem A ; 117(30): 6483-8, 2013 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-23806031

RESUMEN

We report the study of light-induced magnetostructural anomalies in a polymer chain complex of Cu(hfac)2 (hfac = hexafluoroacetylacetonate) with an unusual acyclic tert-butylpyrazolylnitroxide radical (Ltert(Me)) using EPR. This complex ([Cu(hfac)2Ltert(Me)]n) belongs to the family of thermo- and photoswitchable molecular magnets "breathing crystals". Compared to previously studied breathing crystals with nitronyl nitroxides, [Cu(hfac)2Ltert(Me)]n shows much weaker absorption bands in the visible spectral region and therefore is superior for optical manipulation of the spin states. Illumination with light (λ ≈ 540 nm) at cryogenic temperatures leads to formation of a metastable weakly coupled spin state, which relaxes to the ground strongly coupled spin state on a time scale of hours. These phenomena are in many aspects similar to the light-induced excited spin state trapping (LIESST) well-known for spin-crossover compounds. Remarkably, the photoinduced spin state in [Cu(hfac)2Ltert(Me)]n is metastable at temperatures up to TLIESST ≈ 60 K, which is a significant improvement compared to that of previously studied breathing crystals with nitronyl nitroxides (TLIESST ≈ 20 K). We describe LIESST-like behavior observed in [Cu(hfac)2Ltert(Me)]n and discuss possible reasons for the increased stability of the photoinduced spin state.

20.
Bioconjug Chem ; 24(5): 780-95, 2013 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-23521072

RESUMEN

Herein, we report a novel strategy to engineer an acid-sensitive anticancer theranostic agent using a vector-drug ensemble. The ensemble was synthesized by directly conjugating the linoleic acid (LA)-modified branched polyethyleneimine with a chemotherapeutic drug trifluorothymidine. Linoleic acid residues were grafted onto 25 kDa polyethyleneimine (PEI) by treating PEI with linoleic acid chloroanhydride. 5-Trifluoromethyl-2'-deoxyuridine (trifluorothymidine, TFT) was introduced into LA-PEI conjugate by phosphorylating the conjugate with amidophosphate of trifluorothymidine 5'-monophosphate (pTFT), which had been activated by its conversion into the N,N-dimethylaminopyridine derivative. The extent of mononucleotide analog incorporation in the polymer was regulated by the ratio of pTFT to the polymer during the synthesis. Samples containing 20-70 TFT residues per PEI molecule were obtained. The cytotoxicity of PEI-LA-pTFT conjugates decreased with increasing nucleotide content, as examined using the MTT method. Due to the presence of fluorine atoms, TFT-based conjugates could be detected directly in the animals by (19)F magnetic resonance imaging. In addition, the presence of the amidophosphate group in PEI-LA-pTFT conjugates allowed their detection by in vivo(31)P NMR spectroscopy. Indeed, the (31)P NMR signal of a phosphoramide (δ ~ 12 ppm) was observed in the mouse muscle tissue treated with PEI-LA-pTFT conjugate along with the signals from endogenous phosphorus-containing compounds. At the same time, the use of PEI-LA-pTFT conjugate for chemotherapeutic drug delivery is limited due to the low release of pTFT from the carrier. To enhance the release of the drug from the conjugate in the endosomes, PEI-LA polymer was coupled with urocanic acid (UA), which bears imidazole ring and thus can form an acid-labile P-N bond with pTFT. The PEI-LA-UA-pTFT conjugate containing 30 residues of UA and 40 residues of pTFT was tested against the murine Krebs-II ascites carcinoma, grown as an ascetic tumor. The intraperitoneal injection of the conjugates resulted in prolongation of the animals' life and to the complete disappearance of the tumor after three injections.


Asunto(s)
Antineoplásicos/química , Antineoplásicos/uso terapéutico , Ácido Linoleico/química , Polietileneimina/análogos & derivados , Trifluridina/química , Trifluridina/uso terapéutico , Animales , Antineoplásicos/administración & dosificación , Antineoplásicos/farmacocinética , Carcinoma Krebs 2/tratamiento farmacológico , Línea Celular Tumoral , Portadores de Fármacos/química , Humanos , Ligandos , Ratones , Ratones Endogámicos C57BL , Trifluridina/administración & dosificación , Trifluridina/farmacocinética
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