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1.
Environ Sci Pollut Res Int ; 31(7): 10184-10197, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37160521

RESUMEN

Grass carp (Ctenopharyngodon idellus) is the most productive freshwater fish in China, but its traditional aquaculture model still has problems, such as poor water quality and frequent diseases. We have taken monoculture and 80:20 polyculture grass carp ponds as the research object and used EwE software to build the Ecopath model of two ponds. We analyzed and compared the characteristics of ecological structure and energy flow in two ponds. The result showed the highest effective trophic level in the polyculture pond that was higher than that in the monoculture pond, and fish in polyculture had higher EE values which showed the production of fish in polyculture contributed more to the energy conversion efficiency of the ecosystem. Flows into detritus were the largest component of TST both in the two ponds, which accounted for 49.34% and 50.37%. And the average transfer efficiency in monoculture was 13.07%, while that in polyculture was 15.6%. The ascendency/total development capacity (A/TDC) and overhead/total development capacity (O/TDC) were 0.35 and 0.65 both in the two ponds, respectively, which indicated that both systems had a strong anti-perturbation ability, but the stability could be improved. Finn's cycling index (FCI) in polyculture was higher and showed that the polyculture pond was more mature and stable. Unused energy of functional groups will flow to detritus, and that in the monoculture pond was higher, the energy of C. idellus that flowed to detritus in monoculture was 48.17% higher than that in polyculture; unused energy of bacteria and phytoplankton were also high. The result showed that polyculture could improve energy utilization, increase transfer efficiency, and raise the stability of the ecosystem. Grass carp ponds still need to be improved in the aspects of mixed species and energy consumption. It is necessary to improve the ecological and economic benefits of grass carp ponds by optimizing the aquaculture structure and adjusting the aquaculture proportion.


Asunto(s)
Carpas , Animales , Estanques/química , Ecosistema , Agua Dulce , China , Acuicultura
2.
Sensors (Basel) ; 23(13)2023 Jun 29.
Artículo en Inglés | MEDLINE | ID: mdl-37447872

RESUMEN

Underwater wireless sensor networks (UWSNs) have gained prominence in wireless sensor technology, featuring resource-limited sensor nodes deployed in challenging underwater environments. To address challenges like power consumption, network lifetime, node deployment, topology, and propagation delays, cooperative transmission protocols like co-operative (Co-UWSN) and co-operative energy-efficient routing (CEER) have been proposed. These protocols utilize broadcast capabilities and neighbor head node (NHN) selection for cooperative routing. This research introduces NBEER, a novel neighbor-based energy-efficient routing protocol tailored for UWSNs. NBEER aims to surpass the limitations of Co-UWSN and CEER by optimizing NHNS and cooperative mechanisms to achieve load balancing and enhance network performance. Through comprehensive MATLAB simulations, we evaluated NBEER against Co-UWSN and CEER, demonstrating its superior performance across various metrics. NBEER significantly maximizes end-to-end delay, reduces energy consumption, improves packet delivery ratio, extends network lifetime, and enhances total received packets analysis compared to the existing protocols.


Asunto(s)
Benchmarking , Reproducción , Fenómenos Físicos , Tecnología Inalámbrica
3.
Sensors (Basel) ; 23(7)2023 Apr 06.
Artículo en Inglés | MEDLINE | ID: mdl-37050832

RESUMEN

To solve the problem of low accuracy of pavement crack detection caused by natural environment interference, this paper designed a lightweight detection framework named PCDETR (Pavement Crack DEtection TRansformer) network, based on the fusion of the convolution features with the sequence features and proposed an efficient pavement crack detection method. Firstly, the scalable Swin-Transformer network and the residual network are used as two parallel channels of the backbone network to extract the long-sequence global features and the underlying visual local features of the pavement cracks, respectively, which are concatenated and fused to enrich the extracted feature information. Then, the encoder and decoder of the transformer detection framework are optimized; the location and category information of the pavement cracks can be obtained directly using the set prediction, which provided a low-code method to reduce the implementation complexity. The research result shows that the highest AP (Average Precision) of this method reaches 45.8% on the COCO dataset, which is significantly higher than that of DETR and its variants model Conditional DETR where the AP values are 36.9% and 42.8%, respectively. On the self-collected pavement crack dataset, the AP of the proposed method reaches 45.6%, which is 3.8% higher than that of Mask R-CNN (Region-based Convolution Neural Network) and 8.8% higher than that of Faster R-CNN. Therefore, this method is an efficient pavement crack detection algorithm.

4.
Sensors (Basel) ; 22(23)2022 Nov 23.
Artículo en Inglés | MEDLINE | ID: mdl-36501791

RESUMEN

A super-resolution reconstruction approach based on an improved generative adversarial network is presented to overcome the huge disparities in image quality due to variable equipment and illumination conditions in the image-collecting stage of intelligent pavement detection. The nonlinear network of the generator is first improved, and the Residual Dense Block (RDB) is created to serve as Batch Normalization (BN). The Attention Module is then formed by combining the RDB, Gated Recurrent Unit (GRU), and Conv Layer. Finally, a loss function based on the L1 norm is utilized to replace the original loss function. The experimental findings demonstrate that the self-built pavement crack dataset's Peak Signal-to-Noise Ratio (PSNR) and Structural Similarity (SSIM) of the reconstructed images reach 29.21 dB and 0.854, respectively. The results improved compared to the Set5, Set14, and BSD100 datasets. Additionally, by employing Faster-RCNN and a Fully Convolutional Network (FCN), the effects of image reconstruction on detection and segmentation are confirmed. The findings indicate that the segmentation results' F1 is enhanced by 0.012 to 0.737 and the detection results' confidence is increased by 0.031 to 0.9102 when compared to state-of-the-art methods. It has a significant engineering application value and can successfully increase pavement crack-detecting accuracy.

5.
Front Oncol ; 12: 1001959, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36353532

RESUMEN

Objective: Embryonal tumors with multilayered rosettes (ETMRs) are a histologically heterogeneous entity and gather embryonal tumors with abundant neuropil and true rosettes (ETANTRs), ependymoblastoma, and medulloepithelioma. ETMRs are highly aggressive and associated with poorer clinical courses. However, cases of this entity are rare, and advances in molecular genetics and therapy are minor. The purpose of our study was to retrospectively analyze the clinical, pathological features, and prognostic factors of ETMRs. Methods: Our cohort consisted of 17 patients diagnosed with ETMRs in our hospital from 2018 to 2022, and two of them were lost to follow-up. Clinical data were retrieved, and immunohistochemistry and genetic analyses were performed. Results: Among 17 cases, 16 were ETANTRs, and one was medulloepithelioma. Morphologically, tumor cells of ETANTRs could transform into anaplasia and lose the biphasic architecture during tumor progression. Immunohistochemistry of LIN28A revealed positive expression in 17 cases, and the expression of LIN28A was more intense and diffuse in the recurrent lesions than in primaries. The increased N-MYC copy numbers were detected in the primary tumor and recurrence of patient 8. Moreover, the incidence of metastatic disease was 100% in patients aged > 4 years and 18% in the younger group. For patients receiving chemotherapy, the median overall survival time was 7.4 months, while that of those who didn't receive it was 1.2 months. Nevertheless, surgical approaches, radiotherapy, age at presentation, gender, tumor location, and metastatic status were not associated with independent prognosis. Conclusion: ETANTR might not present as the typical morphologies during tumor progression, so analyses of C19MC amplification and Lin28A antibody are indispensable for diagnosing ETMRs accurately. Children aged > 4 years tend to have a higher rate of metastasis in ETMRs. Chemotherapy is the only prognostic factor for ETMRs patients with a favorable prognosis. The biological nature and clinical patterns for recurrent diseases need to be further demonstrated to predict prognosis and guide treatment.

6.
Artículo en Inglés | MEDLINE | ID: mdl-36231329

RESUMEN

An integrated multi-trophic aquaculture system (IMTA) combined muti-trophic organism cultivation with ecological engineering facilities effectively improves energy utilization efficiency and reduces pollution emission, which promotes the development of the aquaculture industry. In this study, an Ecopath model was used to analyze the Pelteobagrus fulvidraco-integrated multi-trophic aquaculture system (FMRP). The results showed that the effective trophic level range of FMRP was low (1~2.566), and the energy throughput was mainly concentrated in trophic level I (65.39%). The utilization rate of commercial fish feed was high. Due to the lack of predators for detritus and primary producers (Oryza sativa L. and hydrophyte), the energy throughput of detritus and the primary production were not fully utilized. The ascendency/total development capacity (A/TDC) and overhead/total development capacity (O/TDC) were 0.29 and 0.59, respectively, which indicated that the aquaculture system had high elasticity and strong anti-perturbation ability, but the stability could be substantially improved. The results of the carrying capacity assessment showed that the maximal single increments of Pelteobagrus fulvidraco fry and juvenile were 0.12 g/m2 and 0.42 g/m2, respectively, and the maximal common increments of Pelteobagrus fulvidraco fry and juvenile were 0.10 g/m2 and 0.10 g/m2, respectively, which indicated that there was insufficient space for increment. The study showed that the FMRP still needed to be improved in the aspects of polyculture species, energy consumption and stability. It would be necessary for the FMRP to perform further optimization and enhancement on the energy utilization efficiency, system stability and comprehensive benefits.


Asunto(s)
Acuicultura , Bagres , Animales , Conservación de los Recursos Naturales
7.
World Neurosurg ; 168: e442-e450, 2022 12.
Artículo en Inglés | MEDLINE | ID: mdl-36195182

RESUMEN

BACKGROUND: Bilateral thalamic gliomas (BTGs) are rare central nervous system tumors, and the outcome is usually dismal. BTG often harbors an EGFR mutation; however, a mutation in H3K27M is rare. We described 5 cases of BTGs harboring concomitant alterations of EGFR and H3K27M and retrospectively analyzed the clinicopathological features and prognosis of this rare entity. METHODS: Clinical data of patients were retrieved, and immunohistochemistry and molecular analyses were performed. In addition, a systematic review of literature was conducted using PubMed. RESULTS: Median patient age was 6 years (range, 3-9 years). The male-to-female ratio was 3:2. Tremors and disturbed speech were the main clinical manifestations. All lesions were located at bilateral thalami, and in 3 of 4 patients, the more significant thalamic lesion was on the left. Two patients harbored insertion mutations in exon 20 of EGFR, 1 missense mutation in exon 7 of EGFR, and 2 EGFR amplifications. After a median overall survival of 8 months, 3 patients died as a result of tumor progression. CONCLUSIONS: Concomitant alterations of EGFR and H3K27M might indicate a new subtype of diffuse midline glioma, H3K27M-altered. In addition, EGFR alterations could provide potential molecular therapeutic strategies to improve the dismal prognosis of BTGs. Due to the rarity of these tumors, more cases must be collected to study the pathogenesis, treatment, and clinical outcomes of BTGs with double alteration phenotypes.


Asunto(s)
Neoplasias Encefálicas , Glioma , Neoplasias Supratentoriales , Femenino , Humanos , Masculino , Neoplasias Encefálicas/patología , Receptores ErbB/genética , Glioma/patología , Mutación/genética , Pronóstico , Estudios Retrospectivos , Preescolar , Niño
8.
Materials (Basel) ; 15(15)2022 Jul 30.
Artículo en Inglés | MEDLINE | ID: mdl-35955210

RESUMEN

The lack of skid resistance performance is a crucial factor leading to road traffic accidents. The pavement surface friction is an essential indicator for measuring the skid resistance. The surface texture structure significantly affects the friction between the tire and the pavement, determining the pavement skid resistance. To deeply study the relationship between surface texture structure and pavement skid resistance performance, two types of asphalt mixture specimens, asphalt concrete (AC) and open-graded friction course (OGFC), are prepared for the skid resistance performance test. Firstly, a high-precision 3D smart sensor Gocator 3110 is used to collect the 3D point cloud data of the asphalt mixture surface texture. The British pendulum tester is used to measure the friction. Secondly, ten feature parameters are extracted to describe the 3D macrotexture characteristics. A data set containing 10 features and 200 groups of texture and friction data was also constructed. Meanwhile, the influence of macro-texture features on the skid resistance performance is discussed. Finally, an optimized Bayesian-LightGBM model is trained based on the constructed dataset. Compared with LightGBM, XGBoost, RF, and SVR algorithms, the Bayesian-LightGBM model can evaluate skid resistance more accurately. The R2 value of the proposed model is 92.83%. The research results prove that ten macrotexture features contribute to the evaluation of skid resistance to varying degrees. Furthermore, compared with AC mixture specimen, the texture surface of OGFC mixture specimen has more obvious height characteristics and higher roughness. The skid resistance of OGFC mixture specimens is better than that of AC.

9.
Sensors (Basel) ; 22(10)2022 May 23.
Artículo en Inglés | MEDLINE | ID: mdl-35632365

RESUMEN

Car crashes are among the top ten leading causes of death; they could mainly be attributed to distracted drivers. An advanced driver-assistance technique (ADAT) is a procedure that can notify the driver about a dangerous scenario, reduce traffic crashes, and improve road safety. The main contribution of this work involved utilizing the driver's attention to build an efficient ADAT. To obtain this "attention value", the gaze tracking method is proposed. The gaze direction of the driver is critical toward understanding/discerning fatal distractions, pertaining to when it is obligatory to notify the driver about the risks on the road. A real-time gaze tracking system is proposed in this paper for the development of an ADAT that obtains and communicates the gaze information of the driver. The developed ADAT system detects various head poses of the driver and estimates eye gaze directions, which play important roles in assisting the driver and avoiding any unwanted circumstances. The first (and more significant) task in this research work involved the development of a benchmark image dataset consisting of head poses and horizontal and vertical direction gazes of the driver's eyes. To detect the driver's face accurately and efficiently, the You Only Look Once (YOLO-V4) face detector was used by modifying it with the Inception-v3 CNN model for robust feature learning and improved face detection. Finally, transfer learning in the InceptionResNet-v2 CNN model was performed, where the CNN was used as a classification model for head pose detection and eye gaze angle estimation; a regression layer to the InceptionResNet-v2 CNN was added instead of SoftMax and the classification output layer. The proposed model detects and estimates head pose directions and eye directions with higher accuracy. The average accuracy achieved by the head pose detection system was 91%; the model achieved a RMSE of 2.68 for vertical and 3.61 for horizontal eye gaze estimations.


Asunto(s)
Aprendizaje Profundo , Movimientos Oculares , Ojo , Fijación Ocular , Movimientos de la Cabeza
10.
PeerJ ; 10: e13057, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35356464

RESUMEN

Background: Recurrence is a risk factor for the prognosis of lung squamous carcinoma (LUSC). DNA methylation levels of RNAs are also associated with LUSC prognosis. This study aimed to construct a prognostic model with high performance in predicting LUSC prognosis using the methylation levels of lncRNAs and genes. Methods: The differentially expressed RNAs (DERs) and differentially methylated RNAs (DMRs) between the recurrent and non-recurrent LUSC tissues in The Cancer Genome Atlas (TCGA; training dataset) were identified. Weighted correlation network analysis was performed to identify co-methylation networks. Differentially methylated genes and lncRNAs with opposite expression-methylation levels were used for the screening of prognosis-associated RNAs. The prognostic model was constructed and its performance was validated in the GSE39279 dataset. Results: A total of 664 DERs and 981 DMRs (including 972 genes) in recurrent LUSC tissues were identified. Three co-methylation modules, including 226 differentially methylated genes, were significantly associated with LUSC. Among prognosis-associated RNAs, 18 DERs/DMRs with opposite methylation-expression levels were included in the methylation prognostic risk model. LUSC patients with high risk scores had a poor prognosis compared with patients who had low risk scores (TCGA: HR = 3.856, 95% CI [2.297-6.471]; GSE39279: HR = 3.040, 95% CI [1.435-6.437]). This model had a high accuracy in predicting the prognosis (AUC = 0.903 and 0.800, respectively), equivalent to the nomogram model inclusive of clinical variables. Conclusions: Referring to the methylation levels of the 16-RNAs might help to predict the survival outcomes in LUSC.


Asunto(s)
Carcinoma de Pulmón de Células no Pequeñas , Carcinoma de Células Escamosas , Neoplasias Pulmonares , ARN Largo no Codificante , Humanos , Metilación de ADN/genética , ARN Largo no Codificante/genética , Pronóstico , Recurrencia Local de Neoplasia/genética , Carcinoma de Células Escamosas/genética , Neoplasias Pulmonares/genética , Carcinoma de Pulmón de Células no Pequeñas/genética , Pulmón/patología
11.
Math Biosci Eng ; 19(1): 253-270, 2022 01.
Artículo en Inglés | MEDLINE | ID: mdl-34902990

RESUMEN

Purpose: Lung adenocarcinoma (LUAD) is a highly lethal subtype of primary lung cancer with a poor prognosis. N6-methyladenosine (m6A), the most predominant form of RNA modification, regulates biological processes and has critical prognostic implications for LUAD. Our study aimed to mine potential target genes of m6A regulators to explore their biological significance in subtyping LUAD and predicting survival. Methods: Using gene expression data from TCGA database, candidate target genes of m6A were predicted from differentially expressed genes (DEGs) in tumor based on M6A2 Target database. The survival-related target DEGs identified by Cox-regression analysis was used for consensus clustering analysis to subtype LUAD. Uni-and multi-variable Cox regression analysis and LASSO Cox-PH regression analysis were used to select the optimal prognostic genes for constructing prognostic score (PS) model. Nomogram encompassing PS score and independent prognostic factors was built to predict 3-year and 5-year survival probability. Results: We obtained 2429 DEGs in tumor tissue, within which, 1267 were predicted to m6A target genes. A prognostic m6A-DEGs network of 224 survival-related target DEGs was established. We classified LUAD into 2 subtypes, which were significantly different in OS time, clinicopathological characteristics, and fractions of 12 immune cell types. A PS model of five genes (C1QTNF6, THSD1, GRIK2, E2F7 and SLCO1B3) successfully split the training set or an independent GEO dataset into two subgroups with significantly different OS time (p < 0.001, AUC = 0.723; p = 0.017, AUC = 0.705).A nomogram model combining PS status, pathologic stage, and recurrence was built, showing good performance in predicting 3-year and 5-year survival probability (C-index = 0.708, 0.723, p-value = 0). Conclusion: Using candidate m6A target genes, we obtained two molecular subtypes and designed a reliable five-gene PS score model for survival prediction in LUAD.


Asunto(s)
Adenocarcinoma del Pulmón , Neoplasias Pulmonares , Adenocarcinoma del Pulmón/genética , Adenocarcinoma del Pulmón/patología , Adenosina/análogos & derivados , Biomarcadores de Tumor/genética , Biomarcadores de Tumor/metabolismo , Regulación Neoplásica de la Expresión Génica , Humanos , Neoplasias Pulmonares/diagnóstico , Neoplasias Pulmonares/genética
12.
Exp Ther Med ; 16(5): 4150-4154, 2018 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-30344690

RESUMEN

Effects of minimally invasive plate-screw internal fixation and sacroiliac joint screw fixation in the treatment of posterior pelvic ring fracture were compared. Continuous selection of 20 cases of unstable pelvic posterior ring fractures, according to indications of operation, were divided into a group of 13 cases of plate-screw internal fixation and a group of 7 cases of sacroiliac joint screw fixation, and the operation effect and complications were compared. The comparisons of operation time, amount of radiation exposure, intraoperative blood loss, length of incision, partial load and full load time, and complications between two groups were carried out, and there were no statistically significant differences (P>0.05). The evaluation of clinical effects (based on the Majeed pelvic functional scoring criteria) and the evaluation of anatomic effects (based on Matta and Tornetta scoring criteria) between the two groups were compared, there was no statistically significant difference (P>0.05). Minimally invasive plate-screw internal fixation and sacroiliac joint screw fixation in the treatment of the posterior pelvic instability fracture both have indications and their therapeutic effects are equally matched.

13.
Biomed Res Int ; 2018: 4690879, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30643807

RESUMEN

OBJECTIVES: This study aims to investigate screw insertion sites on the pubic body and the safe screw insertion parameters of a plate-screw fixation system based on the premise of avoiding damage to the inguinal canal and disruption of the rectus abdominis at the pubic symphysis and pubic crest. RESEARCH METHODS: Excluding cases with poor image quality, tumors, malformations, and fractures, the data of 80 healthy adults (40 males and 40 females aged from 21 to 83 years old, with an average age of 51.65 years) undergoing a computed tomography (CT) scan of the pelvis between January and June of 2017 were collected from Shandong Provincial Hospital. The CT scans were imported to Mimics® software to reconstruct three-dimensional pelvic models. A 3.5 mm pelvic reconstruction plate was placed starting at the outer edge of the pubic tubercle and along the pelvic brim. The two innermost screw insertion sites were marked. The safe range for the screw insertion sites was then determined. The screw insertion plane was selected to measure the safe screw insertion parameters. The length of the screw, the direction of insertion, and intersex differences were then explored via statistical analyses. RESULTS: The medial inclination angles (MIAs) of the screw insertion plane for males and females were 30.42±7.95° and 32.88±10.65°, respectively, with no statistically significant differences. For the medial screw, the maximum anterior inclination angle (MAIA), the maximum screw length, and the maximum posterior inclination angle (MPIA) were 46.51±4.01°, 12.40±9.53 mm, and 11.78±10.22° on average, respectively, with no significant differences by gender (P>0.05). For the lateral screw, the MAIA was 10.35±9.46° and showed no gender differences (P>0.05), but the male group had a greater MPIA (male 11.80±11.00° vs. female 6.23±7.91°, P<0.05) and maximum screw length (male 55.71±6.36 mm vs. female 48.68±8.65, P<0.001). For the tangential screw, the maximum screw length, MIA, and anterior/posterior inclination angle (APIA) were 52.19±8.33 mm, 31.65±9.42°, and 7.53±10.18°, respectively, with no significant differences in the angles by gender (both P>0.05), although the screw length in the male group was significantly longer than that in the female group. CONCLUSIONS: Insertion of two screws into the pubic body through a plate from the lateral side of the pubic tubercle is safe and can maintain the origin of the rectus abdominis and the integrity of the inguinal canal compared to traditional plate-screw fixation. Considering that the pubic body is thinner on the lateral side, we suggest a more medial inclination angle for the lateral screw.


Asunto(s)
Tornillos Óseos , Fijación de Fractura , Fracturas Óseas , Hueso Púbico , Adulto , Anciano , Anciano de 80 o más Años , Femenino , Fracturas Óseas/diagnóstico , Fracturas Óseas/cirugía , Humanos , Masculino , Persona de Mediana Edad , Hueso Púbico/diagnóstico por imagen , Hueso Púbico/cirugía
14.
J Chromatogr Sci ; 54(3): 472-8, 2016 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-26590235

RESUMEN

An efficient method for the rapid extraction, separation and purification of bioactive lignans, arctiin and arctigenin, from Fructus arctii by microwave-assisted extraction coupled with high-speed countercurrent chromatography was developed. The optimal extraction conditions of arctiin and arctigenin were evaluated by orthogonal array. Arctigenin could be converted from arctiin by hydrochloric acid hydrolysis. The separations were performed at a preparative scale with two-phase solvents composed of ethyl acetate-ethanol-water (5 : 1 : 5, v/v/v) for arctiin, and n-hexane-ethyl acetate-ethanol-water (4 : 4 : 3 : 4, v/v/v/v) for arctigenin. From 500 mg of crude extract sample, 122.3 mg of arctiin and 45.7 mg of arctigenin were obtained with the purity of 98.46 and 96.57%, and the recovery of 94.3 and 81.6%, respectively. Their structures were determined by comparison with the high-performance liquid chromatography retention time of standard substance as well as UV, FT-IR, electrospray ion source (ESI)-MS, (1)H-NMR and (13)C-NMR spectrum. According to the antioxidant activity assay, arctigenin had stronger 1,1-diphenyl-2-picrylhydrazyl free radicals scavenging activity.


Asunto(s)
Arctium/química , Distribución en Contracorriente/métodos , Depuradores de Radicales Libres/aislamiento & purificación , Furanos/aislamiento & purificación , Glucósidos/aislamiento & purificación , Lignanos/aislamiento & purificación , Extracción Líquido-Líquido/métodos , Acetatos , Compuestos de Bifenilo/antagonistas & inhibidores , Cromatografía Líquida de Alta Presión , Etanol , Depuradores de Radicales Libres/química , Furanos/química , Glucósidos/química , Hexanos , Ácido Clorhídrico/química , Hidrólisis , Lignanos/química , Microondas , Picratos/antagonistas & inhibidores , Extractos Vegetales/química , Solventes , Agua
15.
Onco Targets Ther ; 8: 1795-803, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26229487

RESUMEN

OBJECTIVE: To uncover the potential regulatory mechanisms of the relevant genes that contribute to the prognosis and prevention of multiple myeloma (MM). METHODS: Microarray data (GSE13591) were downloaded, including five plasma cell samples from normal donors and 133 plasma cell samples from MM patients. Differentially expressed genes (DEGs) were identified by Student's t-test. Functional enrichment analysis was performed for DEGs using the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. Transcription factors and tumor-associated genes were also explored by mapping genes in the TRANSFAC, the tumor suppressor gene (TSGene), and tumor-associated gene (TAG) databases. A protein-protein interaction (PPI) network and PPI subnetworks were constructed by Cytoscape software using the Search Tool for the Retrieval of Interacting Genes (STRING) database. RESULTS: A total of 63 DEGs (42 downregulated, 21 upregulated) were identified. Functional enrichment analysis showed that HLA-DRB1 and VCAM1 might be involved in the positive regulation of immune system processes, and HLA-DRB1 might be related to the intestinal immune network for IgA production pathway. The genes CEBPD, JUND, and ATF3 were identified as transcription factors. The top ten nodal genes in the PPI network were revealed including HLA-DRB1, VCAM1, and TFRC. In addition, genes in the PPI subnetwork, such as HLA-DRB1 and VCAM1, were enriched in the cell adhesion molecules pathway, whereas CD4 and TFRC were both enriched in the hematopoietic cell pathway. CONCLUSION: Several crucial genes correlated to MM were identified, including CD4, HLA-DRB1, TFRC, and VCAM1, which might exert their roles in MM progression via immune-mediated pathways. There might be certain regulatory correlations between HLA-DRB1, CD4, and TFRC.

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