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1.
Front Microbiol ; 13: 879246, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35685922

RESUMEN

Acetic acid bacteria (AAB) are a group of Gram-negative, strictly aerobic bacteria, including 19 reported genera until 2021, which are widely found on the surface of flowers and fruits, or in traditionally fermented products. Many AAB strains have the great abilities to incompletely oxidize a large variety of carbohydrates, alcohols and related compounds to the corresponding products mainly including acetic acid, gluconic acid, gulonic acid, galactonic acid, sorbose, dihydroxyacetone and miglitol via the membrane-binding dehydrogenases, which is termed as AAB oxidative fermentation (AOF). Up to now, at least 86 AOF products have been reported in the literatures, but no any monograph or review of them has been published. In this review, at first, we briefly introduce the classification progress of AAB due to the rapid changes of AAB classification in recent years, then systematically describe the enzymes involved in AOF and classify the AOF products. Finally, we summarize the application of molecular biology technologies in AOF researches.

2.
Biosci Biotechnol Biochem ; 86(5): 681-690, 2022 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-35150230

RESUMEN

We identified a novel flavoprotein-cytochrome c complex d-gluconate dehydrogenase (GADH) encoded by gndXYZ of Gluconobacter oxydans NBRC 3293, which is phylogenetically distinct from previously reported GADHs encoded by gndFGH and gndSLC of Gluconobacter spp. To analyze the biochemical properties of respective GADHs, Gluconobacter japonicus NBRC 3271 mutant strain lacking membranous d-gluconate dehydrogenase activity was constructed. All GADHs (GndFGH, GndSLC, and GndXYZ) were successfully overexpressed in the constructed strain. The optimal pH and KM value at that pH of GndFGH, GndSLC, and GndXYZ were 5, 6, and 4, and 8.82 ± 1.15, 22.9 ± 5.0, and 11.3 ± 1.5 m m, respectively. When the mutants overexpressing respective GADHs were cultured in d-glucose-containing medium, all of them produced 2-keto-d-gluconate, revealing that GndXYZ converts d-gluconate to 2-keto-d-gluconate as well as other GADHs. Among the recombinants, the gndXYZ-overexpressing strain accumulated the highest level of 2-keto-d-gluconate, suggesting its potential for 2-keto-d-gluconate production.


Asunto(s)
Gluconobacter oxydans , Gluconobacter , Gluconatos/química , Gluconobacter/genética , Gluconobacter oxydans/genética , Oxidorreductasas
3.
Microbiol Resour Announc ; 10(25): e0141420, 2021 Jun 24.
Artículo en Inglés | MEDLINE | ID: mdl-34165330

RESUMEN

We report here the draft genome sequence for Saccharomyces cerevisiae strain Awamori number 101, an industrial strain used for producing awamori, a distilled alcohol beverage. It was constructed by assembling the short reads obtained by next-generation sequencing. The 315 contigs constitute an 11.5-Mbp genome sequence encoding 6,185 predicted proteins.

4.
Biosci Biotechnol Biochem ; 85(3): 722-727, 2021 Feb 24.
Artículo en Inglés | MEDLINE | ID: mdl-33624784

RESUMEN

There are only a few combinations of antifungal drugs with known resistance marker genes in the Aspergillus species; therefore, the transformation of their wild-type strains is limited. In this study, to develop the novel dominant selectable marker for itraconazole, a fungal cell membrane synthesis inhibitor, we focused on Aspergillus luchuensis cyp51A (Alcyp51A), which encodes a 14-α-sterol demethylase related to the steroid synthesis pathway. We found that the G52R mutation in AlCyp51A and the replacement of the native promoter with a high-expression promoter contributed to itraconazole resistance in Aspergillus oryzae, designated as itraconazole resistant gene (itrA). The random integration in the A. luchuensis genome of the itrA marker cassette gene also allowed for transformation using itraconazole. Therefore, we succeed in developing a novel itraconazole resistance marker as a dominant selectable marker for transformation in A. oryzae and A. luchuensis.


Asunto(s)
Antifúngicos/farmacología , Aspergillus oryzae/efectos de los fármacos , Aspergillus/efectos de los fármacos , Farmacorresistencia Fúngica/genética , Marcadores Genéticos , Itraconazol/farmacología , Aspergillus/genética , Aspergillus oryzae/genética , Genes Fúngicos
5.
J Biosci Bioeng ; 128(2): 129-134, 2019 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-30824179

RESUMEN

Aspergillus luchuensis NBRC4314 recently underwent genome sequencing. We have not used the frequently used protoplast-polyethylene glycol (PEG) method but have used agrobacterium-mediated transformation (AMT) to genetically engineer this strain because it was difficult to generate protoplasts using commercial cell wall lytic enzymes. In this study, we initially investigated the various conditions for protoplast formation in A. luchuensis. We found that A. luchuensis protoplasts could be generated using a minimal medium for the preculture medium, a static culture for the preculture condition, and Yatalase and α-1,3-glucanase as cell-wall lytic enzymes. These protoplasts could then be transformed with the protoplast-PEG method. Because α-1,3-glucanase was needed to form protoplasts in A. luchuensis, we investigated the role of the α-1,3-glucan synthase gene agsE in protoplast formation, one of five α-1,3-glucan synthase genes in A. luchuensis and a homolog of the major α-1,3-glucan synthase agsB in Aspergillus nidulans. We disrupted agsE in A. luchuensis (ΔagsE) with AMT and found that protoplast formation in ΔagsE was comparable with protoplast formation in Aspergillus oryzae with Yatalase. The ΔagsE protoplasts were also competent for transformation with the protoplast-PEG method. Hence, agsE appears to inhibit protoplast formation in A. luchuensis.


Asunto(s)
Aspergillus oryzae/citología , Aspergillus oryzae/genética , Glucosiltransferasas/genética , Protoplastos/metabolismo , Transformación Genética , Aspergillus nidulans/genética
6.
Appl Environ Microbiol ; 84(10)2018 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-29549098

RESUMEN

Thermotolerant microorganisms are beneficial to the fermentation industry because they reduce the need for cooling and offer other operational advantages. Previously, we obtained a thermally adapted Gluconobacter frateurii strain by experimental evolution. In the present study, we found only a single G insertion in the adapted strain, which causes a frameshift in a gene encoding a putative drug transporter. A mutant derivative strain with the single G insertion in the transporter gene (Wild-G) was constructed from the wild-type strain and showed increased thermotolerance. We found that the thermotolerant strains accumulated substantial intracellular trehalose and manifested a defect in sorbose assimilation, suggesting that the transporter is partly involved in trehalose efflux and sorbose uptake and that the defect in the transporter can improve thermotolerance. The ΔotsAB strain, constructed by elimination of the trehalose synthesis gene in the wild type, showed no trehalose production but, unexpectedly, much better growth than the adapted strain at high temperatures. The ΔotsAB mutant produced more acetate as the final metabolite than the wild-type strain did. We hypothesized that trehalose does not contribute to thermotolerance directly; rather, a metabolic change including increased carbon flux to the pentose phosphate pathway may be the key factor. The NADPH/NADP+ ratio was higher in strain Wild-G, and much higher in the ΔotsAB strain, than in the wild-type strain. Levels of reactive oxygen species (ROS) were lower in the thermotolerant strains. We propose that the defect of the transporter causes the metabolic flux to generate more NADPH, which may enhance thermotolerance in G. frateuriiIMPORTANCE The biorefinery industry has to ensure that microorganisms are robust and retain their viability and function at high temperatures. Here we show that Gluconobacterfrateurii, an industrially important member of the acetic acid bacteria, exhibited enhanced thermotolerance through the reduction of trehalose excretion after thermal adaptation. Although intracellular trehalose may play a key role in thermotolerance, the molecular mechanisms of action of trehalose in thermotolerance are a matter of debate. Our mutated strain that was defective in trehalose synthase genes, producing no trehalose but a larger amount of acetic acid as the end metabolite instead, unexpectedly showed higher thermotolerance than the wild type. Our adapted and mutated thermotolerant strains showed increased NADPH/NADP+ ratios and reductions in ROS levels. We concluded that in G. frateurii, trehalose does not contribute to thermotolerance directly; rather, the metabolic change increases the NADPH/NADP+ ratio to enhance thermotolerance.


Asunto(s)
Proteínas Bacterianas/genética , Gluconobacter/genética , Gluconobacter/metabolismo , Mutagénesis Insercional , NADP/metabolismo , Ácido Acético/metabolismo , Proteínas Bacterianas/metabolismo , Calor , Mutagénesis Sitio-Dirigida , Fenotipo , Sorbosa/metabolismo , Termotolerancia , Trehalosa/metabolismo
7.
Protein Expr Purif ; 145: 100-107, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29366965

RESUMEN

Gluconobacter oxydans produces 3-dehydroquinate by oxidation of quinate through a reaction catalyzed by the quinate dehydrogenase (QDH), membrane-bound, pyrroloquinoline quinone (PQQ)-dependent dehydrogenase. We previously reported the nucleotide and deduced amino acid sequence of QDH and constructed a heterologous expression system of QDH in Pseudomonas sp. (A.S. Vangnai, W. Promden, W. De-Eknamkul, K. Matsushita, H. Toyama, Biochemistry (Moscow) 75:452-459, 2010). Through this study, we aim to update the sequences of QDH and improve the heterologous expression of QDH in Gluconobacter strains using a broad-host-range plasmid. Expression of QDH using a plasmid containing a long 5'-UTR was higher than that using a plasmid with a short 5'-UTR. In addition, the usage of the putative promoter region of the membrane-bound, alcohol dehydrogenase (ADH) of Gluconobacter resulted in higher expression levels compared to the usage of the lacZ promoter. Base substitution experiments allowed to identify the correct TTG initiation codon between two possibilities, and the result of these experiments were consistent with the N-terminal amino acid sequence of the expressed QDH. However, change of the TTG codon to ATG did not increase QDH expression. Therefore, the optimal plasmid for QDH expression included the structural gene with a long 5'-UTR and the ADH promoter. Cell membrane of the recombinant Gluconobacter strain presented approximately 10-times higher specific QDH activity than that observed in the wild-type strain.


Asunto(s)
Oxidorreductasas de Alcohol/genética , Regulación Bacteriana de la Expresión Génica , Gluconobacter oxydans/enzimología , Proteínas Bacterianas/genética , Clonación Molecular , Escherichia coli/genética , Expresión Génica , Gluconobacter oxydans/genética , Proteínas Recombinantes
8.
J Biochem ; 159(1): 87-99, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26188050

RESUMEN

Methylobacterium extorquens AM1 is an aerobic facultative methylotroph known to secrete pyrroloquinoline quinone (PQQ), a cofactor of a number of bacterial dehydrogenases, into the culture medium. To elucidate the molecular mechanism of PQQ biosynthesis, we are focusing on PqqE which is believed to be the enzyme catalysing the first reaction of the pathway. PqqE belongs to the radical S-adenosyl-l-methionine (SAM) superfamily, in which most, if not all, enzymes are very sensitive to dissolved oxygen and rapidly inactivated under aerobic conditions. We here report that PqqE from M. extorquens AM1 is markedly oxygen-tolerant; it was efficiently expressed in Escherichia coli cells grown aerobically and affinity-purified to near homogeneity. The purified and reconstituted PqqE contained multiple (likely three) iron-sulphur clusters and showed the reductive SAM cleavage activity that was ascribed to the consensus [4Fe-4S](2+) cluster bound at the N-terminus region. Mössbauer spectrometric analyses of the as-purified and reconstituted enzymes revealed the presence of [4Fe-4S](2+) and [2Fe-2S](2+) clusters as the major forms with the former being predominant in the reconstituted enzyme. PqqE from M.extorquens AM1 may serve as a convenient tool for studying the molecular mechanism of PQQ biosynthesis, avoiding the necessity of establishing strictly anaerobic conditions.


Asunto(s)
Proteínas Bacterianas/química , Endopeptidasas/química , Methylobacterium extorquens/enzimología , Oxígeno/química , Cofactor PQQ/biosíntesis , S-Adenosilmetionina/química , Secuencia de Aminoácidos , Proteínas Bacterianas/metabolismo , Endopeptidasas/metabolismo , Datos de Secuencia Molecular , Homología de Secuencia de Aminoácido , Espectroscopía de Mossbauer
9.
Biosci Biotechnol Biochem ; 78(3): 533-41, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25036846

RESUMEN

From the pellicle formed on top of brewing coconut water vinegar in Sri Lanka, three Acetobacter strains (SL13E-2, SL13E-3, and SL13E-4) that grow at 42 °C and four Gluconobacter strains (SL13-5, SL13-6, SL13-7, and SL13-8) grow at 37 °C were identified as Acetobacter pasteurianus and Gluconobacter frateurii, respectively. Acetic acid production by the isolated Acetobacter strains was examined. All three strains gave 4% acetic acid from 6% initial ethanol at 37 °C, and 2.5% acetic acid from 4% initial ethanol at 40 °C. Compared with the two other strains, SL13E-4 showed both slower growth and slower acetic acid production. As well as the thermotolerant SKU1108 strain, the activities of the alcohol dehydrogenase and the aldehyde dehydrogenase of SL13E-2 and SL13E-4 were more stable than those of the mesophilic strain. The isolated strains were used to produce coconut water vinegar at higher temperatures than typically used for vinegar production.


Asunto(s)
Ácido Acético/metabolismo , Cocos/microbiología , Fermentación , Gluconobacter/metabolismo , Ácido Acético/química , Alcohol Deshidrogenasa/química , Aldehído Deshidrogenasa/química , Estabilidad de Enzimas , Etanol/química , Gluconobacter/enzimología , Gluconobacter/aislamiento & purificación , Calor , ARN Ribosómico 16S/genética , Sri Lanka
10.
Biochim Biophys Acta ; 1837(10): 1810-20, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24862920

RESUMEN

The bacterial aerobic respiratory chain has a terminal oxidase of the heme-copper oxidase superfamily, comprised of cytochrome c oxidase (COX) and ubiquinol oxidase (UOX); UOX evolved from COX. Acetobacter pasteurianus, an α-Proteobacterial acetic acid bacterium (AAB), produces UOX but not COX, although it has a partial COX gene cluster, ctaBD and ctaA, in addition to the UOX operon cyaBACD. We expressed ctaB and ctaA genes of A. pasteurianus in Escherichia coli and demonstrated their function as heme O and heme A synthases. We also found that the absence of ctaD function is likely due to accumulated mutations. These COX genes are closely related to other α-Proteobacterial COX proteins. However, the UOX operons of AAB are closely related to those of the ß/γ-Proteobacteria (γ-type UOX), distinct from the α/ß-Proteobacterial proteins (α-type UOX), but different from the other γ-type UOX proteins by the absence of the cyoE heme O synthase. Thus, we suggest that A. pasteurianus has a functional γ-type UOX but has lost the COX genes, with the exception of ctaB and ctaA, which supply the heme O and A moieties for UOX. Our results suggest that, in AAB, COX was replaced by ß/γ-Proteobacterial UOX via horizontal gene transfer, while the COX genes, except for the heme O/A synthase genes, were lost.


Asunto(s)
Acetobacter/metabolismo , Evolución Biológica , Complejo IV de Transporte de Electrones/metabolismo , Oxidorreductasas/metabolismo , Acetobacter/enzimología , Acetobacter/genética , Escherichia coli/genética , Genes Bacterianos , Filogenia
11.
J Biosci Bioeng ; 118(2): 134-8, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24559734

RESUMEN

Acetobacter species are well known to have the ability to grow floating on the surface of the medium by producing pellicle, which consists of cells and a self-produced matrix of cell-attached polysaccharide. We previously isolated three thermotolerant strains (SL13E-2, SL13E-3, and SL13E-4) from Sri Lankan coconut vinegar and identified all these strains as Acetobacter pasteurianus. The pellicle polysaccharides of these three strains and of A. pasteurianus SKU1108, which was originally isolated from Thailand, were characterized. The monosaccharide composition of the pellicle polysaccharides of these A. pasteurianus strains was found to be varied. For example, the pellicle polysaccharide of SL13E-2 is composed of rhamnose and glucose in the ratio 1:8, and that of SL13E-4 and mesophilic A. pasteurianus NBRC3191 consists of rhamnose, glucose and xylose in the ratio 1:5:2 and 1:4:2, respectively. On the other hand, the pellicle polysaccharides of SL13E-3 and SKU1108 strains are composed of rhamnose, glucose and galactose in the ratio 2:2:1 and 1:5:2.5, respectively. The pellicle formation of thermotolerant SL13E-2, SL13E-3, and SL13E-4 was found to be significantly induced by the addition of ethanol, while poor induction was observed with SKU1108. The size and sugar composition of the polysaccharides obtained from cells induced by ethanol and by uninduced cells were the same, indicating that the number of molecules of the polysaccharides had increased but the polysaccharide molecule remained unchanged. The addition of a sugar source such as glucose, sucrose or fructose slightly induced pellicle formation in SKU1108, especially at 40°C.


Asunto(s)
Acetobacter/metabolismo , Polisacáridos Bacterianos/metabolismo , Acetobacter/efectos de los fármacos , Membrana Celular/metabolismo , Etanol/farmacología , Glucosa/metabolismo , Ramnosa/metabolismo
12.
Appl Microbiol Biotechnol ; 98(7): 2955-63, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24352733

RESUMEN

Shikimate and 3-dehydroshikimate are useful chemical intermediates for the synthesis of various compounds, including the antiviral drug oseltamivir. Here, we show an almost stoichiometric biotransformation of quinate to 3-dehydroshikimate by an engineered Gluconobacter oxydans strain. Even under pH control, 3-dehydroshikimate was barely detected during the growth of the wild-type G. oxydans strain NBRC3244 on the medium containing quinate, suggesting that the activity of 3-dehydroquinate dehydratase (DHQase) is the rate-limiting step. To identify the gene encoding G. oxydans DHQase, we overexpressed the gox0437 gene from the G. oxydans strain ATCC621H, which is homologous to the aroQ gene for type II DHQase, in Escherichia coli and detected high DHQase activity in cell-free extracts. We identified the aroQ gene in a draft genome sequence of G. oxydans NBRC3244 and constructed G. oxydans NBRC3244 strains harboring plasmids containing aroQ and different types of promoters. All recombinant G. oxydans strains produced a significant amount of 3-dehydroshikimate from quinate, and differences between promoters affected 3-dehydroshikimate production levels with little statistical significance. By using the recombinant NBRC3244 strain harboring aroQ driven by the lac promoter, a sequential pH adjustment for each step of the biotransformation was determined to be crucial because 3-dehydroshikimate production was enhanced. Under optimal conditions with a shift in pH, the strain could efficiently produce a nearly equimolar amount of 3-dehydroshikimate from quinate. In the present study, one of the important steps to convert quinate to shikimate by fermenting G. oxydans cells was investigated.


Asunto(s)
Expresión Génica , Gluconobacter oxydans/enzimología , Gluconobacter oxydans/metabolismo , Hidroliasas/biosíntesis , Ingeniería Metabólica/métodos , Ácido Quínico/metabolismo , Ácido Shikímico/análogos & derivados , Biotransformación , Medios de Cultivo/química , Dosificación de Gen , Gluconobacter oxydans/genética , Hidroliasas/genética , Concentración de Iones de Hidrógeno , Plásmidos , Regiones Promotoras Genéticas , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Ácido Shikímico/metabolismo
13.
J Biosci Bioeng ; 116(5): 533-9, 2013 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-23791634

RESUMEN

Symbiosis has long been a central theme in microbiology. There have been many studies on the symbioses between microorganisms and higher organisms such as plants and animals. There also have been some studies on the symbiosis or coexistence of microorganisms, such as yeasts, lactic acid bacteria (LAB), acetic acid bacteria (AAB) and koji molds, in traditional fermentation (brewing). These microorganisms are considered to interact and cooperate with each other in various natural environments, such as dropped cereal crops or ripe fruits. Human beings have taken advantage of these microbial interactions for producing various fermented foods.


Asunto(s)
Bacterias/metabolismo , Fermentación , Microbiología de Alimentos , Hongos/metabolismo , Simbiosis , Ácido Acético/metabolismo , Bebidas Alcohólicas/microbiología , Grano Comestible/metabolismo , Ácido Láctico/metabolismo , Levaduras/metabolismo
14.
Biosci Biotechnol Biochem ; 76(8): 1497-505, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22878210

RESUMEN

Further upstream of sldSLC, genes for FAD-dependent D-sorbitol dehydrogenase in Gluconobacter frateurii, three additional genes (sldR, xdhA, and perA) are found: for a transcriptional regulator, NAD(P)-dependent xylitol dehydrogenase, and a transporter protein, a member of major facilitator superfamily, respectively. xdhA and perA but not sldR were found to be in the same transcriptional unit. Disruption of sldR resulted in a dramatic decrease in sldSLC promoter activity, indicating that it is an activator for sldSLC expression. The recombinant protein of XdhA expressed in Escherichia coli showed NAD-dependent dehydrogenase activities with xylitol and D-sorbitol, but a mutant strain defective in this gene showed similar activities with both substrates as compared to the wild-type strain. Nonetheless, the growth of the xdhA mutant strain on D-sorbitol and xylitol was retarded, and so was that of a mutant strain defective in perA. These results indicate that xdhA and perA are involved in assimilation of D-sorbitol and xylitol.


Asunto(s)
Proteínas Bacterianas/metabolismo , Proteínas Portadoras/metabolismo , D-Xilulosa Reductasa/metabolismo , Gluconobacter/genética , L-Iditol 2-Deshidrogenasa/metabolismo , Sorbitol/metabolismo , Xilitol/metabolismo , Proteínas Bacterianas/genética , Proteínas Portadoras/genética , D-Xilulosa Reductasa/genética , Escherichia coli , Gluconobacter/enzimología , Calor , L-Iditol 2-Deshidrogenasa/genética , Mutación , NADP/metabolismo , Oxidación-Reducción , Regiones Promotoras Genéticas , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Transcripción Genética
15.
Appl Microbiol Biotechnol ; 95(6): 1531-40, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22434571

RESUMEN

We succeeded in obtaining a strain adapted to higher temperature from a thermotolerant strain, Gluconobacter frateurii CHM43, for sorbose fermentation. The adapted strain showed higher growth and L-sorbose production than original CHM43 strain at higher temperature around 38.5-40 °C. It was also shown to be useful even with the fermentation without temperature control. To understand the sorbose fermentation ability of the adapted strain at higher temperature, D-sorbitol-oxidizing respiratory chain was compared with the CHM43 strain and the adapted strain. We found that the activity of pyrroloquinoline quinone (PQQ)-dependent glycerol dehydrogenase (GLDH), which is a primary dehydrogenase of the respiratory chain and responsible for L-sorbose production, was decreased when the temperature increased, but the decreased activity of GLDH was recovered by the addition of PQQ. Since the adapted strain was found to produce more PQQ than the CHM43 strain, it was suggested that the adapted strain keeps GLDH as holoenzyme with the increased PQQ production, and thus produces more L-sorbose and grows better under higher temperature.


Asunto(s)
Gluconobacter/fisiología , Mutación , Sorbosa/metabolismo , Adaptación Fisiológica , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Fermentación , Regulación Bacteriana de la Expresión Génica , Gluconobacter/enzimología , Gluconobacter/genética , Gluconobacter/crecimiento & desarrollo , Calor , Cofactor PQQ/metabolismo , Deshidrogenasas del Alcohol de Azúcar/genética , Deshidrogenasas del Alcohol de Azúcar/metabolismo
16.
Biosci Biotechnol Biochem ; 75(10): 1921-8, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21979075

RESUMEN

Acetobacter tropicalis SKU1100 is a thermotolerant acetic acid bacterium that grows even at 42 °C, a much higher temperature than the limit for the growth of mesophilic strains. To elucidate the mechanism underlying the thermotolerance of this strain, we attempted to identify the genes essential for growth at high temperature by transposon (Tn10) mutagenesis followed by gene or genome analysis. Among the 4,000 Tn10-inserted mutants obtained, 32 exhibited a growth phenotype comparable to that of the parent strain at 30 °C but not at higher temperatures. We identified the insertion site of Tn10 on the chromosomes of all the mutant strains by TAIL (Thermal Asymmetric Interlaced)-PCR, and found 24 genes responsible for thermotolerance. The results also revealed a partial overlap between the genes required for thermotolerance and those required for acetic acid resistance. In addition, the origin and role of these thermotolerant genes are discussed.


Asunto(s)
Acetobacter/genética , Acetobacter/fisiología , Adaptación Biológica/genética , Genes Bacterianos/genética , Genómica , Temperatura , Acetobacter/crecimiento & desarrollo , Elementos Transponibles de ADN/genética , Mutación , Análisis de Secuencia
17.
Biosci Biotechnol Biochem ; 75(3): 586-9, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21389606

RESUMEN

Selective, high-yield production of 5-keto-D-gluconate (5KGA) from D-glucose by Gluconobacter was achieved without genetic modification. 5KGA production by Gluconobacter suffers byproduct formation of 2-keto-D-gluconate (2KGA). By controlling the medium pH strictly in a range of pH 3.5-4.0, 5KGA was accumulated with 87% conversion yield from D-glucose. The pH dependency of 5KGA formation appeared to be related to that of gluconate oxidizing activity.


Asunto(s)
Gluconatos/metabolismo , Glucosa/metabolismo , Proteínas Bacterianas/metabolismo , Reactores Biológicos , Biotransformación , Fermentación , Gluconobacter/enzimología , Concentración de Iones de Hidrógeno , Oxidación-Reducción , Deshidrogenasas del Alcohol de Azúcar/metabolismo
18.
J Ind Microbiol Biotechnol ; 38(9): 1485-92, 2011 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-21298320

RESUMEN

An acid proteinase from Monascus purpureus No. 3403, MpuAP, was previously purified and some characterized in our laboratory (Agric Biol Chem 48:1637-1639, 1984). However, further information about this enzyme is lacking. In this study, we investigated MpuAP's comprehensive substrate specificity, storage stability, and prospects for reducing antigenicity of whey proteins for application in the food industry. MpuAP hydrolyzed primarily five peptide bonds, Gln(4)-His(5), His(10)-Leu(11), Ala(14)-Leu(15), Gly(23)-Phe(24) and Phe(24)-Phe(25) in the oxidized insulin B-chain. The lyophilized form of the enzyme was well preserved at 30-40°C for 7 days without stabilizers. To investigate the possibility of reducing the antigenicity of the milk whey protein, enzymatic hydrolysates of the whey protein were evaluated by inhibition ELISA. Out of the three main components of whey protein, casein and α-lactalbumin were efficiently degraded by MpuAP. The sequential reaction of MpuAP and trypsin against the whey protein successfully degraded casein, α-lactalbumin and ß-lactoglobulin with the highest degree of hydrolysis. As a result, the hydrolysates obtained by using the MpuAP-trypsin combination showed the lowest antigenicity compared with the single application of pepsin, trypsin or pepsin-trypsin combination. Therefore, the overall result suggested that the storage-stable MpuAP and trypsin combination will be a productive approach for making hypoallergic bovine milk whey protein hydrolysates.


Asunto(s)
Proteínas de la Leche/inmunología , Proteínas de la Leche/metabolismo , Monascus/enzimología , Péptido Hidrolasas/metabolismo , Animales , Antígenos/inmunología , Antígenos/metabolismo , Caseínas/metabolismo , Bovinos , Hidrólisis , Lactalbúmina/metabolismo , Lactoglobulinas/metabolismo , Papaína/metabolismo , Pepsina A/metabolismo , Hidrolisados de Proteína/inmunología , Tripsina/metabolismo , Proteína de Suero de Leche
19.
J Mol Biol ; 407(4): 543-55, 2011 Apr 08.
Artículo en Inglés | MEDLINE | ID: mdl-21277857

RESUMEN

l-Sorbose reductase from Gluconobacter frateurii (SR) is an NADPH-dependent oxidoreductase. SR preferentially catalyzes the reversible reaction between d-sorbitol and l-sorbose with high substrate specificity. To elucidate the structural basis of the catalytic mechanism and the substrate specificity of SR, we have determined the structures of apo-SR, SR in complex with NADPH, and the inactive mutant (His116Leu) of SR in complex with NADPH and l-sorbose at 2.83 Å, 1.90 Å, and 1.80 Å resolutions, respectively. Our results show that SR belongs to the short-chain dehydrogenase/reductase (SDR) family and forms a tetrameric structure. Although His116 is not conserved among SDR family enzymes, the structures of SR have revealed that His116 is important for the stabilization of the proton relay system and for active-site conformation as a fourth catalytic residue. In the ternary complex structure, l-sorbose is recognized by 11 hydrogen bonds. Site-directed mutagenesis of residues around the l-sorbose-binding site has shown that the loss of almost full enzymatic activity was caused by not only the substitution of putative catalytic residues but also the substitution of the residue used for the recognition of the C4 hydroxyl groups of l-sorbose (Glu154) and of the residues used for the construction of the substrate-binding pocket (Cys146 and Gly188). The recognition of the C4 hydroxyl group of l-sorbose would be indispensable for the substrate specificity of SR, which recognizes only l-sorbose and d-sorbitol but not other sugars. Our results indicated that these residues were crucial for the substrate recognition and specificity of SR.


Asunto(s)
Gluconobacter/enzimología , NADP/química , Sorbosa/química , Deshidrogenasas del Alcohol de Azúcar/química , Coenzimas/química , Coenzimas/metabolismo , Cristalografía por Rayos X , Modelos Moleculares , Mutagénesis Sitio-Dirigida , Proteínas Mutantes/química , Mutación Missense , NADP/metabolismo , Multimerización de Proteína , Estructura Cuaternaria de Proteína , Sorbosa/metabolismo
20.
Biochemistry ; 50(9): 1556-66, 2011 Mar 08.
Artículo en Inglés | MEDLINE | ID: mdl-21155540

RESUMEN

PQQ is an exogenous, tricyclic, quino-cofactor for a number of bacterial dehydrogenases. The final step of PQQ formation is catalyzed by PqqC, a cofactorless oxidase. This study focuses on the activation of molecular oxygen in an enzyme active site without metal or cofactor and has identified a specific oxygen binding and activating pocket in PqqC. The active site variants H154N, Y175F,S, and R179S were studied with the goal of defining the site of O(2) binding and activation. Using apo-glucose dehydrogenase to assay for PQQ production, none of the mutants in this "O(2) core" are capable of PQQ/PQQH(2) formation. Spectrophotometric assays give insight into the incomplete reactions being catalyzed by these mutants. Active site variants Y175F, H154N, and R179S form a quinoid intermediate (Figure 1) anaerobically. Y175S is capable of proceeding further from quinoid to quinol, whereas Y175F, H154N, and R179S require O(2) to produce the quinol species. None of the mutations precludes substrate/product binding or oxygen binding. Assays for the oxidation of PQQH(2) to PQQ show that these O(2) core mutants are incapable of catalyzing a rate increase over the reaction in buffer, whereas H154N can catalyze the oxidation of PQQH(2) to PQQ in the presence of H(2)O(2) as an electron acceptor. Taken together, these data indicate that none of the targeted mutants can react fully to form quinone even in the presence of bound O(2). The data indicate a successful separation of oxidative chemistry from O(2) binding. The residues H154, Y175, and R179 are proposed to form a core O(2) binding structure that is essential for efficient O(2) activation.


Asunto(s)
Proteínas Bacterianas/metabolismo , Cofactor PQQ/biosíntesis , Anaerobiosis , Apraxia Ideomotora , Proteínas Bacterianas/genética , Dominio Catalítico , Clonación Molecular , Methylobacterium/enzimología , Modelos Moleculares , Oxígeno/metabolismo , Conformación Proteica
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