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1.
RSC Adv ; 14(22): 15302-15318, 2024 May 10.
Artículo en Inglés | MEDLINE | ID: mdl-38741951

RESUMEN

To purify water polluted by tetracycline antibiotics, a new visible light-driven magnetically recoverable photocatalyst, g-C3N4/CoFe2O4/Bi2MoO6, was prepared in this study, and it effectively removed tetracycline antibiotics. Its rapid recycling was achieved by external magnets, which greatly increased material utilization. After four repeated uses, the degradation rate of tetracycline antibiotics by the g-C3N4/CoFe2O4/Bi2MoO6 composite photocatalyst remained at a high level, and the magnetic separation performance remained stable. Subsequently, it was further discovered that the degradation mechanism of this photocatalytic system was consistent with a double Z-type mechanism, which enabled two transport channels for photogenerated electrons, and was favorable for the separation of the photogenerated electron-hole pairs and prolonged the lifetime of the photogenerated carriers. The active substances playing an important role in the photocatalytic system were ˙O2- and h+. In addition, the possible intermediates in the photocatalytic process were detected by GC-MS analysis, and a degradation mechanism was proposed. The ecotoxicity of the degradation products and intermediates was evaluated using the Toxicity Estimation Software Tool (TEST), and the mung bean seed cultivation test was carried out to visually and efficiently illustrate that the g-C3N4/CoFe2O4/Bi2MoO6 photocatalyst can effectively degrade antibiotics, with low ecotoxicity of the degradation products. This provides a new idea for the removal of organic pollutants using light energy.

2.
J Org Chem ; 89(11): 7982-7990, 2024 Jun 07.
Artículo en Inglés | MEDLINE | ID: mdl-38805363

RESUMEN

The synthesis of monofluorinated heterocyclic compounds by C-H activation combined with defluorination is useful. Studies on the reaction mechanism and selectivity have shown that these processes play a positive role in promoting the development of monofluorinated reactions. Density functional theory (DFT) calculations were performed to investigate the mechanism and selectivity of Ru(II)-catalyzed 2-arylbenzimidazole with trifluoromethyl diazo. DFT calculations showed that C-H activation occurs through a concerted metalation/deprotonation (CMD) mechanism. After that, deprotonation and defluorinative cyclization are assisted by acetate and trifluoroethanol (TFE). Further mechanistic insights through noncovalent interaction (NCI) analysis were also obtained to elucidate the origin of the selectivity in the defluorination process.

3.
Int J Biol Macromol ; 267(Pt 2): 131463, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38599418

RESUMEN

The rational and effective combination of different electrochemical substances to prepare high-performance supercapacitor electrodes has been widely studied by researchers. Currently, most work focuses on polymerizing conductive polymers onto the surface of nanocellulose and carbon materials, and then preparing them into supercapacitor electrodes. This method is effective, but the process is cumbersome. Therefore, we propose a simpler and more effective method. A hydrogel was prepared by using TEMPO oxidized cellulose nanofibers (TOCNF)/multi walled carbon nanotubes (MWCNT), and then immersed in aniline and FeCI3 solutions for 24 h to obtain a hydrogel electrode. At a current density of 0.5 mA cm-2, it exhibits an area specific capacitance of 1028 mF cm-2, with a maximum strain of 58 % and a compressive stress of 150 KPa. The assembled symmetrical supercapacitor exhibits a high specific capacitance of 303 mF cm-2 at a current density of 0.5 mA cm-2. The research results indicate that the proposed method is a new feasible approach for developing supercapacitors.


Asunto(s)
Celulosa , Capacidad Eléctrica , Electrodos , Hidrogeles , Nanotubos de Carbono , Celulosa/química , Nanotubos de Carbono/química , Hidrogeles/química , Nanofibras/química
4.
Chem Asian J ; : e202400184, 2024 Apr 16.
Artículo en Inglés | MEDLINE | ID: mdl-38628038

RESUMEN

We reported a chiral oxamide-phosphine ligand (COAP-Ph)-Pd-catalyzed asymmetric [3+2] cycloaddition reaction between vinyl cyclopropane compounds derived from 1,3-indanedione and 2-vinylcyclopropane-1,1-dicarboxylates with cyclic sulfonyl 1-azadienes. The corresponding reactions provided a series of enantiomerically active spiro cyclopentane-indandione and cyclopentane structures bearing three consecutive stereogenic centers in good yields with good diastereo- and enantioselectivity. The COAP-Pd complex serves not only to promote generation of chiral π-allyl-palladium intermediates and induce the asymmetry of the reaction, but also depress the background reaction.

5.
Adv Sci (Weinh) ; : e2401301, 2024 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-38544484

RESUMEN

The left atrial appendage (LAA) occluder is an important medical device for closing the LAA and preventing stroke. The device-related thrombus (DRT) prevents the implantation of the occluder in exerting the desired therapeutic effect, which is primarily caused by the delayed endothelialization of the occluder. Functional coatings are an effective strategy for accelerating the endothelialization of occluders. However, the occluder surface area is particularly large and structurally complex, and the device is subjected to a large shear friction in the sheath during implantation, which poses a significant challenge to the coating. Herein, a hydrogel coating by the in situ UV-triggered polymerization of double-network polyelectrolytes is reported. The findings reveal that the double network and electrostatic interactions between the networks resulted in excellent mechanical properties of the hydrogel coating. The sulfonate and Arg-Gly-Asp (RGD) groups in the coating promoted hemocompatibility and endothelial growth of the occluder, respectively. The coating significantly accelerated the endothelialization of the LAA occluder in a canine model is further demonstrated. This study has potential clinical benefits in reducing both the incidence of DRT and the postoperative anticoagulant course for LAA closure.

6.
J Org Chem ; 89(7): 4904-4915, 2024 Apr 05.
Artículo en Inglés | MEDLINE | ID: mdl-38500413

RESUMEN

The palladium-catalyzed highly regioselective asymmetric allylic alkylation of 3'-indolyl-3-oxindole derivatives with Morita-Baylis-Hillman (MBH) carbonates was developed to facilely construct chiral 3,3'-bisindole derivatives under mild reaction conditions. The regioselectivity (α/γ) of MBH carbonates was efficiently switched in the presence of chiral oxalamide phosphine or spiroketal-based diphosphine/Pd(0) complexes as a chiral catalyst. A series of multifunctional 3,3'-bisindole derivatives with all-carbon quaternary stereogenic centers were obtained in high yields with good to excellent enantio-, diastereo-, and regioselectivity. The present process is endowed with some salient features such as broad substrate scope, N-protecting group-free, excellent stereoselectivity, as well as adjustable regioselectivity.

7.
Adv Mater ; 36(15): e2310216, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38237136

RESUMEN

The sprayable hydrogel coatings that can establish robust adhesion onto diverse materials and devices hold enormous potential; however, a significant challenge persists due to monomer hydration, which impedes even coverage during spraying and induces inadequate adhesion post-gelation. Herein, a polycation-reinforced (PCR) surface bridging strategy is presented to achieve tough and sprayable hydrogel coatings onto diverse materials. The polycations offer superior wettability and instant electrostatic interactions with plasma-treated substrates, facilitating an effective spraying application. This PCR-based hydrogel coatings demonstrate tough adhesion performance to inert PTFE and silicone, including remarkable shear strength (161 ± 49 kPa for PTFE), interfacial toughness (198 ± 27 J m-2 for PTFE), and notable tolerance to cyclic tension (10 000 cycles, 200% strain, silicone). Meanwhile, this method can be applied to various hydrogel formulations, offering diverse functionalities, including underwater adhesion, lubrication, and drug delivery. Furthermore, the PCR concept enables the conformal construction of durable hydrogel coatings onto sophisticated medical devices like cardiovascular stents. Given its simplicity and adaptability, this approach paves an avenue for incorporating hydrogels onto solid surfaces and potentially promotes untapped applications.


Asunto(s)
Hidrogeles , Polielectrolitos , Siliconas , Politetrafluoroetileno , Reacción en Cadena de la Polimerasa
8.
ACS Omega ; 8(38): 34610-34628, 2023 Sep 26.
Artículo en Inglés | MEDLINE | ID: mdl-37780008

RESUMEN

The blending of hydrogen in natural gas may have effects on the safety of its usage in a domestic house. In this work, the leakage accident of hydrogen-blended natural gas (HBNG) in the kitchen of a domestic house is analyzed by CFD with a hydrogen blending ratio (HBR) ≤ 30%. The whole process is divided into the gas accumulation process and the ventilation process. In the initial leakage stage, the influence of heights and the HBR on the gas distribution is analyzed. HBNG concentration increases with increasing height. Based on the exit Froude number, the formation of a gas cloud in the kitchen is significantly influenced by the initial momentum and buoyancy, while it is more driven by the concentration gradient beyond the kitchen. In contrast to height, the variation of HBR on the HBNG distribution is not significant. In the ventilation process, the evolution of the hazardous gas cloud volume is analyzed. With windows and doors closed, the hazardous gas cloud fills the house in approximately 3600 s after the leakage occurs. When windows and doors are open for ventilation, the volume of the hazardous gas cloud first declines rapidly and then slowly. The reasons for the variation rate of hazardous gas cloud volume are analyzed according to ventilation conditions. The difference during the decline stage for different HBRs is analyzed according to the gas layering properties. Under a lack of convection condition, the ventilation process finally reaches a stagnant stage. In addition, another ventilation process has been investigated after extending the gas accumulation time. After extending the gas accumulation time, the effect of different HBRs on the ventilation process remains the same as before. However, it postpones the time point to enter the stagnation stage. As gas accumulation time extends from 3600 to 5400 and 7200 s, the ventilation time into the stagnation stage increases from about 4800 to 5400 and 6000 s, respectively. This study has implications for the establishment of a risk assessment system based on hazardous gas cloud volume.

10.
J Org Chem ; 88(16): 11867-11873, 2023 Aug 18.
Artículo en Inglés | MEDLINE | ID: mdl-37527492

RESUMEN

A palladium-catalyzed regioselective and asymmetric allylic alkylation of azlactones with MBH carbonates has been developed with chiral oxalamide-phosphine ligands. The corresponding reaction afforded a range of optically active γ-arylidenyl glutamic acid derivatives bearing an α-chiral quaternary stereocenter in good yields with excellent linear regio- and high enantioselectivity. This protocol furnishes an alternative approach for the construction of enantio-enriched unnatural α-amino acid derivatives.

11.
Front Genet ; 14: 1227724, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37600658

RESUMEN

Objective: To assess the performance of diverse prenatal diagnostic approaches for nuchal translucency (NT) thickening and to investigate the optimal prenatal screening or diagnostic action with a NT thickening of 95th percentile-3.50 mm. Methods: A retrospective analysis of 2,328 pregnancies with NT ≥ 95th percentile through ultrasound-guided transabdominal chorionic villus sampling (CVS), amniocentesis, or cordocentesis obtained clinical samples (chorionic villi, amniotic fluid, and cord blood), and real-time quantitative fluorescent PCR (QF-PCR), chromosome karyotyping (CS), chromosome microarray analysis (CMA), or whole exome sequencing (WES) were provided to identify genetic etiologies. Results: In this study, the incidence of chromosomal defects increased with NT thickness. When NT ≥ 6.5 mm, 71.43% were attributed to genetic abnormalities. The 994 gravidas with fetal NT thickening underwent short tandem repeat (STR), CS, and CMA. In 804 fetuses with normal karyotypes, CMA detected 16 (1.99%) extra pathogenic or likely pathogenic copy number variations (CNVs). The incremental yield of CMA was only 1.16% (3/229) and 3.37% (10/297) in the group with NT 95th percentile-2.99 mm and NT 3.0-3.49 mm, separately. Among the 525 gravidas with fetal NT thickening who underwent STR, CMA, and WES, the incremental yield of WES was 4.09% (21/513). In the group of NT 95th percentile-2.99 mm, there were no additional single-nucleotide variations (SNVs) detected in WES, while in 143 cases with NT of 3.0-3.49 mm, the incremental yield of WES was 5.59% (8/143). Conclusion: In the group of NT 95th percentile-3.0 mm, since chromosomal aneuploidy and chromosomal copy number variation were the primary causes and the additional contribution of CMA and WES was not significant, we recommend NIPT-Plus for pregnant women with a NT thickening of 95th percentile-3.0 mm first. In addition, comprehensive prenatal genetic testing involving CMA and WES can benefit pregnancies with NT thickening of 3.0-3.49 mm.

12.
Front Chem ; 11: 1114454, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37324557

RESUMEN

Photocatalysis has exhibited huge potential in selective conversion of glucose into value-added chemicals. Therefore, modulation of photocatalytic material for selective upgrading of glucose is significant. Here, we have investigated the insertion of different central metal ions, Fe, Co, Mn, and Zn, into porphyrazine loading with SnO2 for access to more efficient transformation of glucose into value-added organic acids in aqueous solution at mild reaction conditions. The best selectivity for organic acids containing glucaric acid, gluconic acid, and formic acid of 85.9% at 41.2% glucose conversion was attained by using the SnO2/CoPz composite after reacting for 3 h. The effects of central metal ions on surficial potential and related possible factors have been studied. Experimental results showed that the introduction of metalloporphyrazine with different central metal ions on the surface of SnO2 has a significant effect on the separation of photogenerated charges, changing the adsorption and desorption of glucose and products on the catalyst surface. The central metal ions of cobalt and iron contributed more to the positive effects toward enhancing conversion of glucose and yields of products, and manganese and zinc contributed more to the negative effects, resulting in the poor yield of products. The differences from the central metals may attribute to the surficial potential change of the composite and the coordination effects between the metal and oxygen atom. An appropriate surficial potential environment of the photocatalyst may achieve a better interactive relationship between the catalyst and reactant, while appropriate ability of producing active species matched with adsorption and desorption abilities would gain a better yield of products. These results have provided valued ideas for designing more efficient photocatalysts in selective oxidation of glucose utilizing clean solar energy in the future.

13.
Endocrinology ; 164(7)2023 06 06.
Artículo en Inglés | MEDLINE | ID: mdl-37232361

RESUMEN

Lipid metabolism is closely linked to adiposity. Prader-Willi syndrome (PWS) is a typical genetic disorder causing obesity; however, the distinct lipidomic profiles in PWS children have not been thoroughly investigated. Herein, serum lipidomics analyses were simultaneously explored in PWS, simple obesity (SO), and normal children (Normal). Results indicated that the total concentration of phosphatidylcholine (PC) and lysophosphatidylcholine (LPC) in the PWS group were significantly deceased compared with both the SO and the Normal group. In contrast, compared with the Normal group, there was an overall significant increase in triacylglycerol (TAG) levels in both the PWS and the SO groups, with the highest found in SO group. Thirty-nine and 50 differential lipid species were screened among 3 groups: between obesity (PWS and SO) and the Normal group. Correlation analysis revealed distinct profiles in PWS that was different from other 2 groups. Notably, PC (P16:0/18:1), PE (P18:0-20:3), PE (P18:0-20:4)) showed significant negative correlation with body mass index (BMI) only in the PWS group. PE (P16:0-18:2) showed a negative association with BMI and weight in the PWS group, but significant positive correlation in the SO group; no statistically significant association was found in the Normal group. We also found a significant negative correlation between Blautia genus abundance and several significantly changed lipids, including LPC (14:0), LPC (16:0), TAG (C50:2/C51:9), TAG (C52:2/C53:9), TAG (C52:3/C53:10), and TAG (C52:4/C53:11), but no significant correlation in the Normal group and the SO group. Similarly, in the PWS group, the Neisseria genus was significantly negatively associated with acylcarnitine (CAR) (14:1), CAR (18:0), PE (P18:0/20:3), and PE (P18:0/20:4), and extremely positively associated with TAG (C52:2/C53:9); no obvious correlations were observed in the Normal group and the SO group.


Asunto(s)
Microbioma Gastrointestinal , Obesidad Mórbida , Síndrome de Prader-Willi , Humanos , Niño , Síndrome de Prader-Willi/genética , Obesidad/complicaciones , Índice de Masa Corporal , Lípidos
14.
Sci Total Environ ; 892: 164397, 2023 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-37247732

RESUMEN

As a tree species of shelterbelts, Populus popularis maintains significant ecological functions in arid and semiarid areas. However, stand transpiration (T) and canopy conductance (gc) dynamics of P. popularis are unclear in arid irrigated areas with shallow groundwater fluctuations. To better understand the responses of T and gc to meteorological factors, soil water, and shallow groundwater in arid areas, we observed the environmental conditions and sap flow of P. popularis, and quantified T and gc in three growing seasons of 2018-2020 in a typical arid area of China. Results showed T and gc ranged from 0.18 to 6.11 mm day-1 and 2.26-12.54 mm s-1 in 2018-2020, respectively. Solar radiation and vapor pressure deficit (VPD) were major drivers of T at daily scales. It was consistently found that T exponentially decreased with increasing groundwater table depth (GTD) and decreasing reference evapotranspiration in three years. gc is primarily influenced by VPD and is positively related to soil water content in 0-30 cm soil layer (SWC0-30 cm). Moreover, low SWC0-30 cm and deepening GTD jointly decreased T and gc by 22.45 % and 30.41 %, respectively. The response of gc to VPD was susceptible to groundwater fluctuations, and the synergistic influences of VPD and GTD on gc could be well described by the logarithmic function, especially in 2019. The sensitivity of gc to VPD and its variations under different environmental conditions suggested that a flexible stomatal regulation of transpiration occurred in the observed P. popularis with the arid climate and shallow groundwater. These findings provided the essential basis for the water use strategy of P. popularis and stand water resources management in arid regions.


Asunto(s)
Populus , Agua , Agua/fisiología , Populus/fisiología , Transpiración de Plantas/fisiología , Suelo , Estaciones del Año , Árboles/fisiología
15.
Bioact Mater ; 28: 1-11, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37214260

RESUMEN

The combinational density of immobilized functional molecules on biomaterial surfaces directs cell behaviors. However, limited by the low efficiency of traditional low-throughput experimental methods, investigation and optimization of the combinational density remain daunting challenges. Herein, we report a high-throughput screening set-up to study biomaterial surface functionalization by integrating photo-controlled thiol-ene surface chemistry and machine learning-based label-free cell identification and statistics. Through such a strategy, a specific surface combinational density of polyethylene glycol (PEG) and arginine-glutamic acid-aspartic acid-valine peptide (REDV) leads to high endothelial cell (EC) selectivity against smooth muscle cell (SMC) was identified. The composition was translated as a coating formula to modify medical nickel-titanium alloy surfaces, which was then proved to improve EC competitiveness and induce endothelialization. This work provided a high-throughput method to investigate behaviors of co-cultured cells on biomaterial surfaces modified with combinatorial functional molecules.

16.
Polymers (Basel) ; 15(3)2023 Jan 23.
Artículo en Inglés | MEDLINE | ID: mdl-36771885

RESUMEN

The stable maintenance effect of a chemical oil displacement agent on a foam liquid film usually creates problems with the oilfields surface system. To achieve comprehensive insights into the influence mechanism of these chemical agent components on the foam liquid film, an "SDBS/HPAM/OH-" water-based foam simulation system and corresponding control systems were constructed by adjusting the categories and quantities of component molecules by molecular dynamics (MD) simulation. The simulated results indicated that the foam stability follows the order of "SDBS/HPAM/OH-" system > "SDBS/HPAM" system > "SDBS" system. The smaller the inclination angle of the SDBS molecular tail chain, the greater the tendency of the SDBS molecular configuration to be "upright" at the gas-liquid interface, which is not conducive to preventing the aggregation and penetration of gas molecules at the gas-liquid interface. Although the presence of HPAM molecules can significantly enhance the stability of the liquid film by restricting the liquid film's drainage and the diffusion of gas molecules, the addition of HPAM molecules would weaken the formation ability of the foam liquid film. Through decreasing the aggregation of cations around the co-adsorption layer, OH- not only enhances the interfacial activity of SDBS molecules, but also reduces the electrostatic repulsion between -COO- groups on the HPAM molecular chain, which makes the foam more stable. With an increase in the pH, SDBS concentration, and HPAM concentration, the stability of foam liquid film was strengthened. These results are helpful in facilitating new insights into the formation and stabilization mechanism of water-based foams. In particular, they provide support for the development and application of new defoaming technologies.

17.
Org Lett ; 25(6): 912-916, 2023 Feb 17.
Artículo en Inglés | MEDLINE | ID: mdl-36749129

RESUMEN

A one-pot, five-step domino reaction was developed for the arylation of bis-oxamides derived from optically pure 1,2-diphenylethylenediamine, leading to the formation of a series of chiral bis-oxalamide palladium(II) complexes bearing tetraaryl-conjugated substituents in good yields. In addition, these palladium(II) complexes exhibited perceptible blue fluorescence under ultraviolet light irradiation.

18.
Org Lett ; 25(1): 104-108, 2023 01 13.
Artículo en Inglés | MEDLINE | ID: mdl-36583996

RESUMEN

An asymmetric linear selective allylic alkylation of vinylaziridines with 3-aryl oxindoles has been developed by using a chiral oxamide-phosphine (COAP-Bn-OMe-p)/palladium complex in methanol, which furnished a wide variety of 3,3-disubstituted oxindole derivatives in good yields with excellent regio- and enantioselectivities.


Asunto(s)
Paladio , Oxindoles , Paladio/química , Catálisis , Estereoisomerismo , Alquilación
19.
Front Med (Lausanne) ; 9: 874611, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36388945

RESUMEN

The global epidemic has been controlled to some extent, while sporadic outbreaks still occur in some places. It is essential to summarize the successful experience and promote the development of new drugs. This study aimed to explore the common mechanism of action of the four Chinese patent medicine (CPMs) recommended in the Medical Observation Period COVID-19 Diagnostic and Treatment Protocol and to accelerate the new drug development process. Firstly, the active ingredients and targets of the four CPMs were obtained by the Chinese medicine composition database (TCMSP, TCMID) and related literature, and the common action targets of the four TCMs were sorted out. Secondly, the targets of COVID-19 were obtained through the gene-disease database (GeneCards, NCBI). Then the Venn diagram was used to intersect the common drug targets with the disease targets. And GO and KEGG pathway functional enrichment analysis was performed on the intersected targets with the help of the R package. Finally, the results were further validated by molecular docking and molecular dynamics analysis. As a result, a total of 101 common active ingredients and 21 key active ingredients of four CPMs were obtained, including quercetin, luteolin, acacetin, kaempferol, baicalein, naringenin, artemisinin, aloe-emodin, which might be medicinal substances for the treatment of COVID-19. TNF, IL6, IL1B, CXCL8, CCL2, IL2, IL4, ICAM1, IFNG, and IL10 has been predicted as key targets. 397 GO biological functions and 166 KEGG signaling pathways were obtained. The former was mainly enriched in regulating apoptosis, inflammatory response, and T cell activation. The latter, with 92 entries related to COVID-19, was mainly enriched to signaling pathways such as Coronavirus disease-COVID-19, Cytokine-cytokine receptor interaction, IL-17 signaling pathway, and Toll-like receptor signaling pathway. Molecular docking results showed that 19/21 of key active ingredients exhibited strong binding activity to recognized COVID-19-related targets (3CL of SARS-CoV-2, ACE2, and S protein), even better than one of these four antiviral drugs. Among them, shinflavanone had better affinity to 3CL, ACE2, and S protein of SARS-CoV-2 than these four antiviral drugs. In summary, the four CPMs may play a role in the treatment of COVID-19 by binding flavonoids such as quercetin, luteolin, and acacetin to target proteins such as ACE2, 3CLpro, and S protein and acting on TNF, IL6, IL1B, CXCL8, and other targets to participate in broad-spectrum antiviral, immunomodulatory and inflammatory responses.

20.
BMC Genomics ; 23(1): 590, 2022 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-35964005

RESUMEN

BACKGROUND: Carcass traits are important in pig breeding programs for improving pork production. Understanding the genetic variants underlies complex phenotypes can help explain trait variation in pigs. In this study, we integrated a weighted single-step genome-wide association study (wssGWAS) and copy number variation (CNV) analyses to map genetic variations and genes associated with loin muscle area (LMA), loin muscle depth (LMD) and lean meat percentage (LMP) in Duroc pigs. RESULTS: Firstly, we performed a genome-wide analysis for CNV detection using GeneSeek Porcine SNP50 Bead chip data of 3770 pigs. A total of 11,100 CNVs were detected, which were aggregated by overlapping 695 CNV regions (CNVRs). Next, we investigated CNVs of pigs from the same population by whole-genome resequencing. A genome-wide analysis of 21 pigs revealed 23,856 CNVRs that were further divided into three categories (851 gain, 22,279 loss, and 726 mixed), which covered 190.8 Mb (~ 8.42%) of the pig autosomal genome. Further, the identified CNVRs were used to determine an overall validation rate of 68.5% for the CNV detection accuracy of chip data. CNVR association analyses identified one CNVR associated with LMA, one with LMD and eight with LMP after applying stringent Bonferroni correction. The wssGWAS identified eight, six and five regions explaining more than 1% of the additive genetic variance for LMA, LMD and LMP, respectively. The CNVR analyses and wssGWAS identified five common regions, of which three regions were associated with LMA and two with LMP. Four genes (DOK7, ARAP1, ELMO2 and SLC13A3) were highlighted as promising candidates according to their function. CONCLUSIONS: We determined an overall validation rate for the CNV detection accuracy of low-density chip data and constructed a genomic CNV map for Duroc pigs using resequencing, thereby proving a value genetic variation resource for pig genome research. Furthermore, our study utilized a composite genetic strategy for complex traits in pigs, which will contribute to the study for elucidating the genetic architecture that may be influenced and regulated by multiple forms of variations.


Asunto(s)
Variaciones en el Número de Copia de ADN , Estudio de Asociación del Genoma Completo , Animales , Genotipo , Fenotipo , Polimorfismo de Nucleótido Simple , Porcinos/genética
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