Analysis of the Spatholobus suberectus full-length transcriptome identified an R2R3-MYB transcription factor-encoding gene SsMYB158 that regulates flavonoid biosynthesis.

Spatholobus suberectus Dunn (Leguminosae) has been used for medicinal purposes for a long period. Flavonoids are the major bioactive components of S. suberectus. However, there is still limited knowledge of the exact method via which transcription factors (TFs) regulate flavonoid biosynthesis. The full-length transcriptome of S. suberectus was analyzed using SMRT sequencing; 61,548 transcripts were identified, including 12,311 new gene loci, 53,336 novel transcripts, 44,636 simple sequence repeats, 36,414 complete coding sequences, 871 long non-coding RNAs and 6781 TFs. The SsMYB158 TF, which is associated with flavonoid biosynthesis, belongs to the R2R3-MYB class and is localized subcellularly to the nucleus. The overexpression of SsMYB158 in Nicotiana benthamiana and the transient overexpression of SsMYB158 in S. suberectus resulted in a substantial enhancement in both flavonoids and catechin levels. In addition, there was a remarkable upregulation in the expression of essential enzyme-coding genes associated with the flavonoid biosynthesis pathways. Our study revealed SsMYB158 as a critical regulator of flavonoid biosynthesis in S. suberectus and laying the foundation for its molecular breeding.

Shade responses and resistant mechanisms in Spatholobus suberectus.

The medicinal plant Spatholobus suberectus Dunn is easily exposed to shade stress during growth, but its shade responses and shade stress resistant mechanisms have not been clarified. In this study, shade treatments including four attenuated sunlight intensities (100%, 60%, 40%, and 10%) and three shade durations (30 d, 45 d, and 60 d) were applied to S. suberectus. The shade-induced morphological indicators, phytohormonal regulations, metabolic flavonoids contents, transcriptomic flavonoid pathway gene expressions, and stress physiological changes of S. suberectus were analyzed. The putative promoter cis-regulatory elements (CREs) of 18 flavonoid biosynthetic pathway genes were identified. Results showed the stem growth indicators of S. suberectus were better at 40% light intensity. Phytohormones were involved in the shade-induced responses. Short-term shade (30 d) increased total flavonoids, gallated catechins and especially epigallocatechin gallate contents and favored for boosting medicinal value. Long-term shade (45 d, 60 d) tended to decrease flavonoids. The shade-induced flavonoids changes were attributed to their corresponding biosynthesizing genes expression variations. The high antioxidant capacity and the presence of phytohormone-, stress-, and development-related CREs provided the basis for stress resistance. In conclusion, the multiple responses under shade and the CREs analysis elucidated S. suberectus' shade tolerance.

Integrated transcriptome and small RNA sequencing analyses reveal a drought stress response network in Sophora tonkinensis.

BACKGROUND: Sophora tonkinensis Gagnep is a traditional Chinese medical plant that is mainly cultivated in southern China. Drought stress is one of the major abiotic stresses that negatively impacts S. tonkinensis growth. However, the molecular mechanisms governing the responses to drought stress in S. tonkinensis at the transcriptional and posttranscriptional levels are not well understood. RESULTS: To identify genes and miRNAs involved in drought stress responses in S. tonkinensis, both mRNA and small RNA sequencing was performed in root samples under control, mild drought, and severe drought conditions. mRNA sequencing revealed 66,476 unigenes, and the differentially expressed unigenes (DEGs) were associated with several key pathways, including phenylpropanoid biosynthesis, sugar metabolism, and quinolizidine alkaloid biosynthesis pathways. A total of 10 and 30 transcription factors (TFs) were identified among the DEGs under mild and severe drought stress, respectively. Moreover, small RNA sequencing revealed a total of 368 miRNAs, including 255 known miRNAs and 113 novel miRNAs. The differentially expressed miRNAs and their target genes were involved in the regulation of plant hormone signal transduction, the spliceosome, and ribosomes. Analysis of the regulatory network involved in the response to drought stress revealed 37 differentially expressed miRNA-mRNA pairs. CONCLUSION: This is the first study to simultaneously profile the expression patterns of mRNAs and miRNAs on a genome-wide scale to elucidate the molecular mechanisms of the drought stress responses of S. tonkinensis. Our results suggest that S. tonkinensis implements diverse mechanisms to modulate its responses to drought stress.

Economical, green and rapid synthesis of CDs-Cu2O/CuO nanotube from the biomass waste reed as sensitive sensing platform for the electrochemical detection of hydrazine.

Reeds live widely in swamp and wetland and have an important ecological balance functions in environmental protection. However, the use of reeds is not effectively. The carbon dots (CDs) have been developed as the family of 0D nanocarbon materials and have all the advantages of the carbon family. In this work, we prepared CDs via hydrothermal method using reed. It is surprising that the reed-derived CDs are an effective reducing agent. A highly catalytically active composite material CDs-Cu2O/CuO was synthesized using economical, green, one-step ultrasonic method and used for the detection of hydrazine. The electrochemical detection of hydrazine was investigated by cyclic voltammetry. The result shows that the CDs-Cu2O/CuO exhibited good electrocatalytic activity for the oxidation of hydrazine. The fabricated sensor presented a wide linear range from 0.99 µM to 5903 µM and a detection limit of 0.024 µM. In addition, the CDs-Cu2O/CuO exhibited good sensitivity, stability and repeatability. Therefore, the CDs-Cu2O/CuO provides a new idea for the utilization of reed and low-cost electrocatalytic nanocomposite.

Reed-derived fluorescent carbon dots as highly selective probes for detecting Fe3+ and excellent cell-imaging agents.

A kind of highly selective and sensitive fluorescent probe for detecting Fe3+, carbon dots (CDs), was prepared with renewable reed naturally containing C, N, O, and S elements as a green and eco-friendly carbon source by a simple hydrothermal process. The fluorescence of CDs without purification and surface modification can be quenched by Fe3+ in a wide concentration range of 0 to 362 µmol L-1 (concentration of Fe3+), with detection limits as low as 0.014 µmol L-1 in 0-50 µmol L-1. Characterizations, such as TEM, XPS, Raman and FTIR, confirmed that the static quenching mechanism involved the generation of non-luminescent complexes between Fe3+ and functional groups (carboxyl group, sulfur-oxyl group and hydroxyl group) on the surface of CDs and with the aggregation of CDs. More importantly, CDs had good biocompatibility and nontoxicity according to an MTT cell-viability assay, and cells labeled with CDs emitted blue, green and red color fluorescence. Thus, the static quenching mechanism was confirmed. So, this reed-derived natural CD solution can be utilized in detecting Fe3+, culture cells, and cell imaging.