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1.
Discov Oncol ; 15(1): 549, 2024 Oct 11.
Artículo en Inglés | MEDLINE | ID: mdl-39394548

RESUMEN

BACKGROUND: Epstein-Barr virus (EBV) infection has been closely linked to the development of various types of cancer. EB nuclear antigen 1 binding protein 2 (EBNA1BP2) is a crucial molecule for stable isolation of EBV in latent infection. However, the role of EBNA1BP2 in multiple tumor types is remains unclear. In this study, we comprehensively analyzed the functional characteristics of EBNA1BP2 and investigate its potential as a prognostic biomarker in pan-cancer. METHODS: We utilized data from TCGA (The Cancer Genome Atlas) and GEO (Gene Expression Omnibus) databases and employed various bioinformatics analysis tools, including TIMER2.0, HPA, GEPIA2.0, PrognoScan, cBioPortal, CancerSEA, and BioGRID to explore the expression pattern, prognostic value, immune infiltration, and methylation level of EBNA1BP2 in pan-cancer. Additionally, we conducted enrichment analysis of genes associated with EBNA1BP2 to identify potential biological functions and pathways. RESULTS: Our analysis revealed that EBNA1BP2 expression was significantly higher in tumor tissues compared to tumor-adjacent tissues. We observed that lower expression of EBNA1BP2 in adrenocortical carcinoma (ACC), brain lower grade glioma (LGG), sarcoma (SARC), and uterine carcinosarcoma (UCS) was significantly associated with improved overall survival (OS) and disease-free survival (DFS). Furthermore, the promoter methylation level of EBNA1BP2 was downregulated in the majority of cancer types. At the single-cell level, EBNA1BP2 was found to be positively correlated with cell cycle and DNA repair processes, while negatively correlated with hypoxia. Additionally, EBNA1BP2 was associated with the infiltration of immune cells such as B cells, cancer-associated fibroblast cells, and CD8+ T cells. Gene enrichment analysis indicated that EBNA1BP2 was mainly involved in nucleoplasm and RNA binding pathways. CONCLUSION: Our findings suggest that EBNA1BP2 may serve as a potential prognostic biomarker for survival in pan-cancer. Further experimental studies are needed to validate these findings and explore the underlying mechanisms by which EBNA1BP2 contributes to tumorigenesis.

2.
Int J Biol Macromol ; 281(Pt 3): 136410, 2024 Oct 11.
Artículo en Inglés | MEDLINE | ID: mdl-39395514

RESUMEN

Evodiae fructus polysaccharide (EFP) has been previously shown to protect against alcohol-induced gastric lesions. However, which and how active fractions in EFP exert gastroprotection remains unclear. This study aimed to characterize the structure of the purified fraction (EFP-2-1) of EFP, and investigate its gastroprotection and underlying mechanisms. EFP-2-1 was obtained through column chromatography, and was characterized using instrumental analytical techniques. Gastroprotective effect of EFP-2-1 was evaluated using alcohol-induced gastric lesions in rats, and its mechanism was explored through proteomics, metabolomics and diversity sequencing. Results showed that EFP-2-1 had a molecular weight of 7.3 kDa, and consisted mainly of rhamnose, galacturonic acid, galactose and arabinose. Its backbone contained HG and RG-I domains, and branched with →5)-α-l-Araf-(1→, α-l-Araf-(1→ and →4)-ß-d-Galp-(1→ residues. EFP-2-1 reduced gastric lesions and the levels of MDA, TNF-α and IL-6, activated PPARγ, primarily altered protein digestion and absorption and bile secretion metabolic pathways, regulated gut microbiota like Faecalibaculum and Lachnoclostridium, and increased short-chain fatty acids production. Correlations were observed among the gut microbiota, metabolites and biochemical indexes influenced by EFP-2-1. These findings suggest that EFP-2-1 is an active fraction of EFP for protecting against alcohol-induced gastric lesions, which may be linked to PPARγ activation, gut microbiota and serum metabolism.

3.
PLoS One ; 19(9): e0308423, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39250506

RESUMEN

Soil nutrient levels play a crucial role in determining crop yield. A comprehensive understanding of the spatial distribution patterns and evaluation grades of soil nutrients is of significant practical importance for informed fertilization practices, enhancing crop production, and optimizing agricultural land utilization. This study focuses on the urban area of Kashi Prefecture in Xinjiang as a case study. Utilizing soil sample data, GIS spatial interpolation analysis was conducted, incorporating plot boundary information to propose a comprehensive evaluation method for assessing soil nutrient levels at the plot level. Experimental findings revealed the following: (1) The average values of soil organic matter (SOM), total nitrogen (AN), total potassium (AK), and total phosphorus (AP) in the study area were determined to be 13.3 g/kg, 0.74 g/kg, 0.33 g/kg, and 0.03 g/kg, respectively. Among these, AN and SOM were classified as the fourth grade, indicating relatively deficient levels, while AK and AP were classified as the first and second grade, indicating relatively abundant levels. (2) The comprehensive evaluation of soil nutrient grades in the study area primarily fell within the third, fourth, and second grades, representing areas of 29.08 km2, 25 km2, and 4.05 km2, accounting for 50.03%, 43%, and 6.97% of the total area, respectively. (3) The evaluation results of soil nutrient levels at the plot level emphasized the boundary characteristics and provided a more refined assessment grade. This evaluation method is better suited to meet the practical production requirements of farmers and is considered feasible. The outcomes of this study can serve as a reference for precision agriculture management.


Asunto(s)
Agricultura , Nitrógeno , Fósforo , Suelo , Suelo/química , Agricultura/métodos , Fósforo/análisis , Nitrógeno/análisis , Nutrientes/análisis , China , Potasio/análisis , Productos Agrícolas/crecimiento & desarrollo , Sistemas de Información Geográfica
4.
Neural Netw ; 180: 106728, 2024 Sep 10.
Artículo en Inglés | MEDLINE | ID: mdl-39299036

RESUMEN

In the pursuit of potential treatments for neurological disorders and the alleviation of patient suffering, deep brain stimulation (DBS) has been utilized to intervene or investigate pathological neural activities. To explore the exact mechanism of how DBS works, a memristive two-neuron network considering DBS is newly proposed in this work. This network is implemented by coupling two-dimensional Morris-Lecar neuron models and using a memristor synaptic synapse to mimic synaptic plasticity. The complex bursting activities and dynamical effects are revealed numerically through dynamical analysis. By examining the synchronous behavior, the desynchronization mechanism of the memristor synapse is uncovered. The study demonstrates that synaptic connections lead to the appearance of time-lagged or asynchrony in completely synchronized firing activities. Additionally, the memristive two-neuron network is implemented in hardware based on FPGA, and experimental results confirm the abundant neuronal electrical activities and chaotic dynamical behaviors. This work offers insights into the potential mechanisms of DBS intervention in neural networks.

5.
Plant Physiol ; 2024 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-39133898

RESUMEN

The extensive use of nitrogen fertilizer boosts rice (Oryza sativa) production but also harms ecosystems. Therefore, enhancing crop nitrogen use efficiency is crucial. Here, we performed map-based cloning and identified the EARLY FLOWERING3 (ELF3) like protein-encoding gene OsELF3-1, which confers enhanced nitrogen uptake in rice. OsELF3-1 forms a ternary complex (OsEC) with OsELF4s and OsLUX, the putative orthologs of ELF4 and LUX ARRHYTHMO (LUX) in Arabidopsis (Arabidopsis thaliana), respectively. OsEC directly binds to the promoter of Grain number, plant height, and heading date7 (Ghd7) and represses its expression. Ghd7 encodes a transcription factor that has major effects on multiple agronomic traits. Ghd7 is also a transcriptional repressor and directly suppresses the expression of ABC1 REPRESSOR1 (ARE1), a negative regulator of nitrogen use efficiency. Therefore, targeting the OsEC-Ghd7-ARE1 module offers an approach to enhance nitrogen uptake, presenting promising avenues for sustainable agriculture.

6.
Natl Sci Rev ; 11(8): nwae116, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-39007007

RESUMEN

Flexible multiplexing chips that permit reconfigurable multidimensional channel utilization are indispensable for revolutionary 6G terahertz communications, but the insufficient manipulation capability of terahertz waves prevents their practical implementation. Herein, we propose the first experimental demonstration of a flexible multiplexing chip for terahertz communication by revealing the unique mechanism of topological phase (TP) transition and perseveration in a heterogeneously coupled bilayer valley Hall topological photonic system. The synthetic and individual TPs operated in the coupled and decoupled states enable controllable on-chip modular TP transitions and subchannel switching. Two time-frequency interleaved subchannels support 10- and 12-Gbit/s QAM-16 high-speed data streams along corresponding paths over carriers of 120 and 130 GHz with 2.5- and 3-GHz bandwidths, respectively. This work unlocks interlayer heterogeneous TPs for inspiring ingenious on-chip terahertz-wave regulation, allowing functionality-reconfigurable, compactly integrated and CMOS-compatible chips.

7.
Chempluschem ; 89(9): e202400192, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38979961

RESUMEN

A three-dimensional (3D) anionic cadmium-organic framework, namely [(CH3)2NH2][Cd1.5(DMTDC)2] ⋅ 2DMA ⋅ 0.5H2O (Cd-MOF; DMA=N,N-dimethylacetamide), was successfully synthesized under solvothermal conditions by using a linear thienothiophene-containing dicarboxylate ligand, 3,4-dimethylthieno [2,3-b]-thiophene-2,5-dicar-boxylic acid (H2DMTDC). Single-crystal X-ray diffraction analysis reveals that Cd-MOF exhibits a 3D anionic framework with pcu α-Po topology, featuring rectangle and rhombus-shaped channels along b- and c- axis direction. Cd-MOF demonstrates selective adsorption of cationic dyes over anionic and neutral dyes. Additionally, Tb3+-loaded Cd-MOF serves as a fast-response fluorescence sensor for the sensitive detection of Fe3+ ions with a low limit of detection (8.90×10-7 M) through fluorescence quenching.

8.
New Phytol ; 243(6): 2251-2264, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-39073105

RESUMEN

The shape of rice grains not only determines the thousand-grain weight but also correlates closely with the grain quality. Here we identified an ultra-large grain accession (ULG) with a thousand-grain weight exceeding 60 g. The integrated analysis of QTL, BSA, de novo genome assembled, transcription sequencing, and gene editing was conducted to dissect the molecular basis of the ULG formation. The ULG pyramided advantageous alleles from at least four known grain-shaping genes, OsLG3, OsMADS1, GS3, GL3.1, and one novel locus, qULG2-b, which encoded a leucine-rich repeat receptor-like kinase. The collective impacts of OsLG3, OsMADS1, GS3, and GL3.1 on grain size were confirmed in transgenic plants and near-isogenic lines. The transcriptome analysis identified 112 genes cooperatively regulated by these four genes that were prominently involved in photosynthesis and carbon metabolism. By leveraging the pleiotropy of these genes, we enhanced the grain yield, appearance, and stress tolerance of rice var. SN265. Beyond showcasing the pyramiding of multiple grain size regulation genes that can produce ULG, our study provides a theoretical framework and valuable genomic resources for improving rice variety by leveraging the pleiotropy of grain size regulated genes.


Asunto(s)
Grano Comestible , Regulación de la Expresión Génica de las Plantas , Oryza , Sitios de Carácter Cuantitativo , Oryza/genética , Oryza/crecimiento & desarrollo , Oryza/metabolismo , Grano Comestible/genética , Grano Comestible/crecimiento & desarrollo , Sitios de Carácter Cuantitativo/genética , Genes de Plantas , Plantas Modificadas Genéticamente , Proteínas de Plantas/metabolismo , Proteínas de Plantas/genética , Fenotipo , Alelos , Estrés Fisiológico/genética
9.
Int J Colorectal Dis ; 39(1): 97, 2024 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-38922361

RESUMEN

BACKGROUND: The 8th AJCC TNM staging for non-metastatic lymph node-positive colon adenocarcinoma patients(NMLP-CA) stages solely by lymph node status, irrespective of the positivity of tumor deposits (TD). This study uses machine learning and Cox regression to predict the prognostic value of tumor deposits in NMLP-CA. METHODS: Patient data from the SEER registry (2010-2019) was used to develop CSS nomograms based on prognostic factors identified via multivariate Cox regression. Model performance was evaluated by c-index, dynamic calibration, and Schmid score. Shapley additive explanations (SHAP) were used to explain the selected models. RESULTS: The study included 16,548 NMLP-CA patients, randomized 7:3 into training (n = 11,584) and test (n = 4964) sets. Multivariate Cox analysis identified TD, age, marital status, primary site, grade, pT stage, and pN stage as prognostic for cancer-specific survival (CSS). In the test set, the gradient boosting machine (GBM) model achieved the best C-index (0.733) for CSS prediction, while the Cox model and GAMBoost model optimized dynamic calibration(6.473) and Schmid score (0.285), respectively. TD ranked among the top 3 most important features in the models, with increasing predictive significance over time. CONCLUSIONS: Positive tumor deposit status confers worse prognosis in NMLP-CA patients. Tumor deposits may confer higher TNM staging. Furthermore, TD could play a more significant role in the staging system.


Asunto(s)
Adenocarcinoma , Neoplasias del Colon , Ganglios Linfáticos , Metástasis Linfática , Aprendizaje Automático , Modelos de Riesgos Proporcionales , Humanos , Neoplasias del Colon/patología , Neoplasias del Colon/mortalidad , Masculino , Adenocarcinoma/patología , Adenocarcinoma/mortalidad , Femenino , Pronóstico , Persona de Mediana Edad , Ganglios Linfáticos/patología , Anciano , Estadificación de Neoplasias , Nomogramas , Programa de VERF
10.
Cell Stem Cell ; 31(8): 1175-1186.e7, 2024 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-38876106

RESUMEN

Organoids and organs-on-a-chip have emerged as powerful tools for modeling human gut physiology and disease in vitro. Although physiologically relevant, these systems often lack the environmental milieu, spatial organization, cell type diversity, and maturity necessary for mimicking human intestinal mucosa. To instead generate models closely resembling in vivo tissue, we herein integrated organoid and organ-on-a-chip technology to develop an advanced human organoid model, called "mini-colons." By employing an asymmetric stimulation with growth factors, we greatly enhanced tissue longevity and replicated in vivo-like diversity and patterning of proliferative and differentiated cell types. Mini-colons contain abundant mucus-producing goblet cells and, signifying mini-colon maturation, single-cell RNA sequencing reveals emerging mature and functional colonocytes. This methodology is expanded to generate microtissues from the small intestine and incorporate additional microenvironmental components. Finally, our bioengineered organoids provide a precise platform to systematically study human gut physiology and pathology, and a reliable preclinical model for drug safety assessment.


Asunto(s)
Bioingeniería , Colon , Efectos Colaterales y Reacciones Adversas Relacionados con Medicamentos , Organoides , Organoides/citología , Organoides/fisiología , Colon/citología , Colon/efectos de los fármacos , Colon/fisiología , Pirrolidinas/toxicidad , para-Aminobenzoatos/toxicidad , Proliferación Celular , Diferenciación Celular , Intestino Delgado/citología
11.
Theor Appl Genet ; 137(7): 154, 2024 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-38856926

RESUMEN

KEY MESSAGE: Our findings highlight a valuable breeding resource, demonstrating the potential to concurrently enhance grain shape, thermotolerance, and alkaline tolerance by manipulating Gγ protein in rice. Temperate Geng/Japonica (GJ) rice yields have improved significantly, bolstering global food security. However, GJ rice breeding faces challenges, including enhancing grain quality, ensuring stable yields at warmer temperatures, and utilizing alkaline land. In this study, we employed CRISPR/Cas9 gene-editing technology to knock out the GS3 locus in seven elite GJ varieties with superior yield performance. Yield component measurements revealed that GS3 knockout mutants consistently enhanced grain length and reduced plant height in diverse genetic backgrounds. The impact of GS3 on the grain number per panicle and setting rate depended on the genetic background. GS3 knockout did not affect milling quality and minimally altered protein and amylose content but notably influenced chalkiness-related traits. GS3 knockout indiscriminately improved heat and alkali stress tolerance in the GJ varieties studied. Transcriptome analysis indicated differential gene expression between the GS3 mutants and their wild-type counterparts, enriched in biological processes related to photosynthesis, photosystem II stabilization, and pathways associated with photosynthesis and cutin, suberine, and wax biosynthesis. Our findings highlight GS3 as a breeding resource for concurrently improving grain shape, thermotolerance, and alkaline tolerance through Gγ protein manipulation in rice.


Asunto(s)
Grano Comestible , Oryza , Fitomejoramiento , Proteínas de Plantas , Termotolerancia , Álcalis , Sistemas CRISPR-Cas , Grano Comestible/genética , Grano Comestible/crecimiento & desarrollo , Edición Génica , Regulación de la Expresión Génica de las Plantas , Oryza/genética , Oryza/crecimiento & desarrollo , Oryza/metabolismo , Fenotipo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Plantas Modificadas Genéticamente/genética , Termotolerancia/genética
12.
PLoS One ; 19(5): e0303219, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38805455

RESUMEN

The mixing of cotton seeds of different cultivars and qualities can lead to differences in growth conditions and make field management difficult. In particular, except for yield loss, it can also lead to inconsistent cotton quality and poor textile product quality, causing huge economic losses to farmers and the cotton processing industry. However, traditional cultivar identification methods for cotton seeds are time-consuming, labor-intensive, and cumbersome, which cannot meet the needs of modern agriculture and modern cotton processing industry. Therefore, there is an urgent need for a fast, accurate, and non-destructive method for identifying cotton seed cultivars. In this study, hyperspectral images (397.32 nm-1003.58 nm) of five cotton cultivars, namely Jinke 20, Jinke 21, Xinluzao 64, Xinluzao 74, and Zhongmiansuo 5, were captured using a Specim IQ camera, and then the average spectral information of seeds of each cultivar was used for spectral analysis, aiming to estab-lish a cotton seed cultivar identification model. Due to the presence of many obvious noises in the < 400 nm and > 1000 nm regions of the collected spectral data, spectra from 400 nm to 1000 nm were selected as the representative spectra of the seed samples. Then, various denoising techniques, including Savitzky-Golay (SG), Standard Normal Variate (SNV), and First Derivative (FD), were applied individually and in combination to improve the quality of the spectra. Additionally, a successive projections algorithm (SPA) was employed for spectral feature selection. Based on the full-band spectra, a Partial Least Squares-Discriminant Analysis (PLS-DA) model was established. Furthermore, spectral features and textural features were fused to create Random Forest (RF), Convolutional Neural Network (CNN), and Extreme Learning Machine (ELM) identification models. The results showed that: (1) The SNV-FD preprocessing method showed the optimal denoising performance. (2) SPA highlighted the near-infrared region (800-1000 nm), red region (620-700 nm), and blue-green region (420-570 nm) for identifying cotton cultivar. (3) The fusion of spectral features and textural features did not consistently improve the accuracy of all modeling strategies, suggesting the need for further research on appropriate modeling strategies. (4) The ELM model had the highest cotton cultivar identification accuracy, with an accuracy of 100% for the training set and 98.89% for the test set. In conclusion, this study successfully developed a highly accurate cotton seed cultivar identification model (ELM model). This study provides a new method for the rapid and non-destructive identification of cotton seed cultivars, which will help ensure the cultivar consistency of seeds used in cotton planting, and improve the overall quality and yield of cotton.


Asunto(s)
Gossypium , Semillas , Semillas/crecimiento & desarrollo , Análisis Espectral/métodos
13.
Cogn Neurodyn ; 18(2): 645-657, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38699611

RESUMEN

Electromagnetic induction plays a crucial impact on the firing activity of biological neurons, since it exists along with the mutual effect between membrane potential and ions transport. Flux-controlled memristor is an available candidate in characterizing the electromagnetic induction effect. Different from the previously reported literature, a non-ideal flux-controlled memristor with cosine mem-conductance function is employed to determine the periodic magnetization and leakage flux processes in neurons. Thereafter, a three-dimensional (3D) memristive Wilson (m-Wilson) neuron model is constructed under the consideration of this kind of electromagnetic induction. Numerical simulations are performed by multiple numerical tools, which demonstrate that the 3D m-Wilson neuron model can generate abundant firing activities. Interestingly, coexisting firing activities, antimonotonicity, and firing frequency regulation are discovered under special parameter settings. Furthermore, a PCB-based analog circuit is designed and hardware measurements are executed to verify the numerical simulations. These explorations in numerical and hardware surveys might provide insights to regulate the firing activities by appropriate electromagnetic induction.

14.
Cogn Neurodyn ; 18(2): 539-555, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38699613

RESUMEN

Synaptic plasticity makes memristors particularly suitable for simulating the connection synapses between neurons that describe magnetic induction coupling. By applying a memristor to the synaptic coupling between two map-based neuron models, a memristor-coupled dual-neuron mapping (MCDN) model is proposed in this article. The MCDN model has a line fixed point set associated with the memristor initial state, which is always unstable for the model parameters and memristor initial state of interest. Complex spiking/bursting firing patterns and their transitions are disclosed using some dynamical analysis means. The numerical results show that these spiking/bursting firings are significantly relied on the memristor initial state, demonstrating the coexistence of firing patterns. Moreover, the initial effects of complete synchronization are explored for the homogeneous MCDN model, and it is clarified that in addition to being related to the coupling strength, the synchronization activities are extremely dependent on the initial states of the memristor and neurons. Finally, these numerical results are confirmed by the FPGA-based hardware experiments.

15.
Rice (N Y) ; 17(1): 35, 2024 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-38748282

RESUMEN

BACKGROUND: Plant cell walls have evolved precise plasticity in response to environmental stimuli. The plant heterotrimeric G protein complexes could sense and transmit extracellular signals to intracellular signaling systems, and activate a series of downstream responses. dep1 (Dense and Erect Panicles 1), the gain-of-function mutation of DEP1 encoding a G protein γ subunit, confers rice multiple improved agronomic traits. However, the effects of DEP1 on cell wall biosynthesis and wall-related agronomic traits remain largely unknown. RESULTS: In this study, we showed that the DEP1 mutation affects cell wall biosynthesis, leading to improved lodging resistance and biomass saccharification. The DEP1 is ubiquitously expressed with a relatively higher expression level in tissues rich in cell walls. The CRISPR/Cas9 editing mutants of DEP1 (dep1-cs) displayed a significant enhancement in stem mechanical properties relative to the wild-type, leading to a substantial improvement in lodging resistance. Cell wall analyses showed that the DEP1 mutation increased the contents of cellulose, hemicelluloses, and pectin, and reduced lignin content and cellulose crystallinity (CrI). Additionally, the dep1-cs seedlings exhibited higher sensitivity to cellulose biosynthesis inhibitors, 2,6-Dichlorobenzonitrile (DCB) and isoxaben, compared with the wild-type, confirming the role of DEP1 in cellulose deposition. Moreover, the DEP1 mutation-mediated alterations of cell walls lead to increased enzymatic saccharification of biomass after the alkali pretreatment. Furthermore, the comparative transcriptome analysis revealed that the DEP1 mutation substantially altered expression of genes involved in carbohydrate metabolism, and cell wall biosynthesis. CONCLUSIONS: Our findings revealed the roles of DEP1 in cell wall biosynthesis, lodging resistance, and biomass saccharification in rice and suggested genetic modification of DEP1 as a potential strategy to develop energy rice varieties with high lodging resistance.

16.
Oncogene ; 43(23): 1769-1778, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38632437

RESUMEN

Pyruvate kinase M2 (PKM2) is a central metabolic enzyme driving the Warburg effect in tumor growth. Previous investigations have demonstrated that PKM2 is subject to O-linked ß-N-acetylglucosamine (O-GlcNAc) modification, which is a nutrient-sensitive post-translational modification. Here we found that unc-51 like autophagy activating kinase 1 (ULK1), a glucose-sensitive kinase, interacts with PKM2 and phosphorylates PKM2 at Ser333. Ser333 phosphorylation antagonizes PKM2 O-GlcNAcylation, promotes its tetramer formation and enzymatic activity, and decreases its nuclear localization. As PKM2 is known to have a nuclear role in regulating c-Myc, we also show that PKM2-S333 phosphorylation inhibits c-Myc expression. By downregulating glucose consumption and lactate production, PKM2 pS333 attenuates the Warburg effect. Through mouse xenograft assays, we demonstrate that the phospho-deficient PKM2-S333A mutant promotes tumor growth in vivo. In conclusion, we identified a ULK1-PKM2-c-Myc axis in inhibiting breast cancer, and a glucose-sensitive phosphorylation of PKM2 in modulating the Warburg effect.


Asunto(s)
Homólogo de la Proteína 1 Relacionada con la Autofagia , Neoplasias de la Mama , Proteínas Portadoras , Péptidos y Proteínas de Señalización Intracelular , Proteínas de la Membrana , Proteínas de Unión a Hormona Tiroide , Hormonas Tiroideas , Efecto Warburg en Oncología , Humanos , Homólogo de la Proteína 1 Relacionada con la Autofagia/metabolismo , Homólogo de la Proteína 1 Relacionada con la Autofagia/genética , Fosforilación , Animales , Neoplasias de la Mama/metabolismo , Neoplasias de la Mama/patología , Neoplasias de la Mama/genética , Femenino , Ratones , Hormonas Tiroideas/metabolismo , Hormonas Tiroideas/genética , Proteínas de la Membrana/metabolismo , Proteínas de la Membrana/genética , Proteínas Portadoras/metabolismo , Proteínas Portadoras/genética , Péptidos y Proteínas de Señalización Intracelular/metabolismo , Péptidos y Proteínas de Señalización Intracelular/genética , Línea Celular Tumoral , Proteínas Proto-Oncogénicas c-myc/metabolismo , Proteínas Proto-Oncogénicas c-myc/genética , Acetilglucosamina/metabolismo
17.
Artículo en Inglés | MEDLINE | ID: mdl-38578854

RESUMEN

Predicting the potential for recovery of motor function in stroke patients who undergo specific rehabilitation treatments is an important and major challenge. Recently, electroencephalography (EEG) has shown potential in helping to determine the relationship between cortical neural activity and motor recovery. EEG recorded in different states could more accurately predict motor recovery than single-state recordings. Here, we design a multi-state (combining eyes closed, EC, and eyes open, EO) fusion neural network for predicting the motor recovery of patients with stroke after EEG-brain-computer-interface (BCI) rehabilitation training and use an explainable deep learning method to identify the most important features of EEG power spectral density and functional connectivity contributing to prediction. The prediction accuracy of the multi-states fusion network was 82%, significantly improved compared with a single-state model. The neural network explanation result demonstrated the important region and frequency oscillation bands. Specifically, in those two states, power spectral density and functional connectivity were shown as the regions and bands related to motor recovery in frontal, central, and occipital. Moreover, the motor recovery relation in bands, the power spectrum density shows the bands at delta and alpha bands. The functional connectivity shows the delta, theta, and alpha bands in the EC state; delta, theta, and beta mid at the EO state are related to motor recovery. Multi-state fusion neural networks, which combine multiple states of EEG signals into a single network, can increase the accuracy of predicting motor recovery after BCI training, and reveal the underlying mechanisms of motor recovery in brain activity.


Asunto(s)
Interfaces Cerebro-Computador , Aprendizaje Profundo , Rehabilitación de Accidente Cerebrovascular , Accidente Cerebrovascular , Humanos , Electroencefalografía/métodos , Rehabilitación de Accidente Cerebrovascular/métodos
18.
J Nanobiotechnology ; 22(1): 117, 2024 Mar 16.
Artículo en Inglés | MEDLINE | ID: mdl-38493145

RESUMEN

Reactive oxygen species (ROS) has emerged as potent therapeutic agents for biofilm-associated bacterial infections. Chemodynamic therapy (CDT), involving the generation of high-energy ROS, displays great potential in the therapy of bacterial infections. However, challenges such as insufficient hydrogen peroxide (H2O2) and over-expressed glutathione (GSH) levels within the microenvironment of bacterial biofilms severely limit the antibacterial efficacy of CDT. Herein, we have developed a multifunctional nanoplatform (CuS@CaO2@Dex) by integrating copper sulfide (CuS) and calcium peroxide (CaO2) into dextran (Dex)-coated nanoparticles. This innovative platform enhanced ROS generation for highly efficient biofilm elimination by simultaneously supplying H2O2 and depleting GSH. The Dex-coating facilitated the penetrability of CuS@CaO2@Dex into biofilms, while CaO2 generated a substantial amount of H2O2 in the acidic biofilm microenvironment. CuS, through a Fenton-like reaction, catalyzed the conversion of self-supplied H2O2 into hydroxyl radicals (•OH) and consumed the overexpressed GSH. Additionally, the incorporation of near-infrared II (NIR II) laser irradiation enhanced the photothermal properties of CuS, improving the catalytic efficiency of the Fenton-like reaction for enhanced antibacterial effects. In vivo experiments have demonstrated that CuS@CaO2@Dex exhibited remarkable antibacterial and antibiofilm efficacy, exceptional wound healing capabilities, and notable biosafety. In summary, the Dex-coated nanoplatform proposed in this study, with its self-sterilization capability through ROS, holds significant potential for future biomedical applications.


Asunto(s)
Infecciones Bacterianas , Staphylococcus aureus Resistente a Meticilina , Neoplasias , Humanos , Peróxido de Hidrógeno/farmacología , Especies Reactivas de Oxígeno , Antibacterianos/farmacología , Biopelículas , Glutatión , Línea Celular Tumoral , Microambiente Tumoral
19.
Heliyon ; 10(4): e26499, 2024 Feb 29.
Artículo en Inglés | MEDLINE | ID: mdl-38404763

RESUMEN

Accurately portraying the mechanism of the flow of natural resource consumption between regions and its impact on ecology is of crucial value in deepening the understanding of the coordinated relationship between population, resources, environment and development. Consequently, this promotes the sustainable development of the natural economy and society. Based on a regional-industrial perspective, this study used a localized three-dimensional ecological footprint model to measure and decompose natural resources in Xinjiang from 2005 to 2020. In doing so, the study clarified the supply, demand, and flow utilization of natural capital in Xinjiang, the balance of spatial and temporal allocation of resources, the coupling between economic growth and resource consumption, and the coordination between industrial structure and ecological environment. The results showed that (1) Xinjiang's per capita ecological deficit grew from 2.096 to 11.667 in 2005-2020. Moreover, the energy footprint was a decisive part of the ecological deficit throughout the study period. Furthermore, the trend of increased ecological pressure was higher in northern and eastern Xinjiang than in southern Xinjiang. (2) The overall Gini coefficient of Xinjiang's ecological carrying capacity was at the critical value of spatial equilibrium (0.4), with differences between the groups: Northern & Southern Xinjiang > Northern & Eastern Xinjiang > Eastern & Southern Xinjiang. The reasons for this inter-regional economic disparity are related to fiscal expenditure/GDP, level of urbanization, and regional industrial output. Overall, the decoupling relationship between environmental pressures and economic growth was optimistic. (3) From an industrial perspective, the levels of industrial structural efficiency and the industrial ecological harmony index were still relatively low, but the overall trend was on the rise. (4) Resource endowment, economic development, consumption structure, and population had significant driving effects on the ecological footprint, whereas environmental protection, science, and technology could inhibit its growth to a certain extent. This study aimed to provide an in-depth analysis of the current situation and problems of natural resource use in Xinjiang and provide theoretical and practical references for sustainable development in the region.

20.
Zhongguo Shi Yan Xue Ye Xue Za Zhi ; 32(1): 257-261, 2024 Feb.
Artículo en Chino | MEDLINE | ID: mdl-38387931

RESUMEN

OBJECTIVE: To observe the clinical efficacy and safety of hypomethylating agent therapy in chronic myelomonocytic leukemia (CMML). METHODS: From February 2014 to June 2021, the clinical data, efficacy, survival time and safety of CMML patients diagnosed in the Second Hospital of Hebei Medical University and treated with hypomethylating agent therapy were retrospectively analyzed. RESULTS: A total of 25 CMML patients received hypomethylating agent therapy, including 18 cases treated with decitabine (DEC) and 7 cases treated with azacytidine (AZA) as the basic treatment. Among them, 20 patients responded, and 7 patients got complete remission (CR). All patients with CR were treated with DEC as the basic treatment. Five cases of CR occurred in the first 4 courses of treatment. After a median follow-up of 16.4 (9.4-20.5) months, 4 patients with CR progressed to acute myeloid leukemia (AML). The median overall survival (OS) time of 25 CMML patients was 17.4 months (95%CI: 12.437-22.363). According to MD Anderson prognostic scoring system (MDAPS), CMML-specific prognostic scoring system (CPSS), CPSS molecular (CPSS-mol), Mayo molecular model (MMM), risk stratification of patients was performed, and the difference only between different risk stratification of MDAPS and survival time was statistically significant. Common adverse reactions of hypomethylating agent therapy in CMML patients included infection, gastrointestinal reaction, hematological toxicity, skin allergy and liver function damage. All patients' symptoms were improved after corresponding treatment. CONCLUSION: Hypomethylating agent therapy is effective and safe for CMML patients. CR mostly occurs in the first 4 courses of treatment, and hypomethylating agent therapy combined with low-dose chemotherapy can be used for patients who do not respond. Hypomethylating agent therapy can delay the disease, but can't prevent progression.


Asunto(s)
Leucemia Mieloide Aguda , Leucemia Mielomonocítica Crónica , Humanos , Leucemia Mielomonocítica Crónica/tratamiento farmacológico , Estudios Retrospectivos , Resultado del Tratamiento , Azacitidina/uso terapéutico , Leucemia Mieloide Aguda/tratamiento farmacológico
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