Hydrochemical fingerprints of karst underground river systems impacted by urbanization in Guiyang, Southwest China.

Karst groundwater plays an irreplaceable role in the formation and development of urban areas, and land-use and land-cover change (LUCC) and the input of pollutants during the urbanization process would pose potential environmental risks to underground rivers. We analysed the relationship between urbanization processes and underground river hydrochemistry over nearly 35 years in Guiyang city, southwest of China, it was found that concentrations of various cations and anions, as well as total dissolved solids (TDS), gradually increased with the urbanization process, with significant fluctuations during the rapid urbanization periods. The Hydrochemical Facies Evolution Diagram (HFED) clearly showed the influence of urbanization on the hydrochemistry of the underground rivers. The ion ratios of γMg2+/γCa2+-γHCO3-, γNa+/γCl-, Ca2+/Mg2+-Ca2+ or Mg2+/Σ cations, HCO3-/SO42--HCO3- or SO42-/Σ anions revealed two distinct phases in the hydrochemical evolution of the underground river system, highly consistent with the urbanization process. Before the rapid urbanization, acid deposition and agricultural activities affected the hydrochemistry, with HCO3-Ca·Mg and HCO3·SO4-Ca·Mg as the dominant types controlled by limestone and dolomite dissolution in water-rock interactions. As acid deposition diminished, the input of SO42- from urban sewage compensated for the reduced impact, but the increased impermeable surfaces reduced the infiltration of atmospheric precipitation, leading to a reduced dissolution of dolomite minerals in water-rock interactions, resulting in a decrease in Mg2+ and a change in the hydrochemical type. The hydrochemical type evolved from a single HCO3·SO4-Ca·Mg type and HCO3-Ca·Mg type to multiple types, such as HCO3·Cl-Ca, HCO3·SO4-Ca, HCO3-Ca, and HCO3·SO4-Ca·Mg, and was highly unstable. With changes in land use, the proportions of various cations and anions in the hydrochemistry changed, especially NH4+, NO3-, SO42-, Na+, and Cl-, which were more sensitive to human activities. This study indicated the impact of urbanization on the hydrochemistry of the underground river system, with the input of SO42- from human activities and the increase in paved surfaces due to urbanization collectively altering the hydrochemical types of the underground river system. The rapid response of karst underground river system hydrochemistry indicates a potential impact on groundwater system by urbanization that should not be ignored.

Abscisic acid inhibits primary root growth by impairing ABI4-mediated cell cycle and auxin biosynthesis.

Cell cycle progression and the phytohormones auxin and abscisic acid (ABA) play key roles in primary root growth, but how ABA mediates the transcription of cell cycle-related genes and the mechanism of crosstalk between ABA and auxin requires further research. Here, we report that ABA inhibits primary root growth by regulating the ABA INSENSITIVE4 (ABI4)-CYCLIN-DEPENDENT KINASE B2;2 (CDKB2;2)/CYCLIN B1;1 (CYCB1;1) module-mediated cell cycle as well as auxin biosynthesis in Arabidopsis (Arabidopsis thaliana). ABA induced ABI4 transcription in the primary root tip, and the abi4 mutant showed an ABA-insensitive phenotype in primary root growth. Compared with the wild type (WT), the meristem size and cell number of the primary root in abi4 increased in response to ABA. Further, the transcription levels of several cell-cycle positive regulator genes, including CDKB2;2 and CYCB1;1, were upregulated in abi4 primary root tips. Subsequent chromatin immunoprecipitation (ChIP)-seq, ChIP-qPCR, and biochemical analysis revealed that ABI4 repressed the expression of CDKB2;2 and CYCB1;1 by physically interacting with their promoters. Genetic analysis demonstrated that overexpression of CDKB2;2 or CYCB1;1 fully rescued the shorter primary root phenotype of ABI4-overexpression lines, and consistently, abi4/cdkb2;2-cr or abi4/cycb1;1-cr double mutations largely rescued the ABA-insensitive phenotype of abi4 with regard to primary root growth. The expression levels of DR5promoter-GFP and PIN1promoter::PIN1-GFP in abi4 primary root tips were significantly higher than those in WT after ABA treatment, with these changes being consistent with changes in auxin concentration and expression patterns of auxin biosynthesis genes. Taken together, these findings indicated that ABA inhibits primary root growth through ABI4-mediated cell cycle and auxin-related regulatory pathways.

The ABI4-RbohD/VTC2 regulatory module promotes reactive oxygen species (ROS) accumulation to decrease seed germination under salinity stress.

Salinity stress enhances reactive oxygen species (ROS) accumulation by activating the transcription of NADPH oxidase genes such as RbohD, thus mediating plant developmental processes, including seed germination. However, how salinity triggers the expression of ROS-metabolism-related genes and represses seed germination has not yet been fully addressed. In this study, we show that Abscisic Acid-Insensitive 4 (ABI4), a key component in abscisic acid (ABA) signaling, directly combines with RbohD and Vitamin C Defective 2 (VTC2), the key genes involved in ROS production and scavenging, to modulate ROS metabolism during seed germination under salinity stress. Salinity-induced ABI4 enhances RbohD expression by physically interacting with its promoter, and subsequently promotes ROS accumulation, thus resulting in cell membrane damage and a decrease in seed vigor. Additional genetic evidence indicated that the rbohd mutant largely rescues the salt-hypersensitive phenotype of ABI4 overexpression seeds. Consistently, the abi4/vtc2 double mutant showed the salt-sensitive phenotype, similar to the vtc2 mutant, suggesting that both RbohD and VTC2 are epistatic to ABI4 genetically. Altogether, these results suggest that the salt-induced RbohD transcription and ROS accumulation is dependent on ABI4, and that the ABI4-RbohD/VTC2 regulatory module integrates both ROS metabolism and cell membrane integrity, ultimately repressing seed germination under salinity stress.

Identification and Bioinformatic Analysis of the GmDOG1-Like Family in Soybean and Investigation of Their Expression in Response to Gibberellic Acid and Abscisic Acid.

Seed germination is one of the most important stages during plant life cycle, and DOG1 (Delay of germination1) plays a pivotal regulatory role in seed dormancy and germination. In this study, we have identified the DOG1-Like (DOG1L) family in soybean (Glycine max), a staple oil crop worldwide, and investigated their chromosomal distribution, structure and expression patterns. The results showed that the GmDOG1L family is composed of 40 members, which can be divided into six subgroups, according to their evolutionary relationship with other known DOG1-Like genes. These GmDOG1Ls are distributed on 18 of 20 chromosomes in the soybean genome and the number of exons for all the 40 GmDOG1Ls varied greatly. Members of the different subgroups possess a similar motif structure composition. qRT-PCR assay showed that the expression patterns of different GmDOG1Ls were significantly altered in various tissues, and some GmDOG1Ls expressed primarily in soybean seeds. Gibberellic acid (GA) remarkably inhibited the expression of most of GmDOG1Ls, whereas Abscisic acid (ABA) inhibited some of the GmDOG1Ls expression while promoting others. It is speculated that some GmDOG1Ls regulate seed dormancy and germination by directly or indirectly relating to ABA and GA pathways, with complex interaction networks. This study provides an important theoretical basis for further investigation about the regulatory roles of GmDOG1L family on soybean seed germination.

A matter of life and death: Molecular, physiological, and environmental regulation of seed longevity.

Both seed germination and early seedling establishment are important biological processes in a plant's lifecycle. Seed longevity is a key trait in agriculture, which directly influences seed germination and ultimately determines crop productivity and hence food security. Numerous studies have demonstrated that seed deterioration is regulated by complex interactions between diverse endogenous genetically controlled factors and exogenous environmental cues, including temperature, relative humidity, and oxygen partial pressure during seed storage. The endogenous factors, including the chlorophyll concentration, the structure of the seed coat, the balance of phytohormones, the concentration of reactive oxygen species, the integrity of nucleic acids and proteins and their associated repair systems, are also involved in the control of seed longevity. A precise understanding of the regulatory mechanisms underlying seed longevity is becoming a hot topic in plant molecular biology. In this review, we describe recent research into the regulation of seed longevity and the interactions between the various environmental and genetic factors. Based on this, the current state-of-play regarding seed longevity regulatory networks will be presented, particularly with respect to agricultural seed storage, and the research challenges to be faced in the future will be discussed.

[Temporal Response of Subterranean Karst Stream Hydrochemistry to Urbanization].

The hydrochemical responses of underground rivers to urbanization were studied using a 25-year groundwater observation dataset and remote sensing. We found that as urbanization progresses, the mineralization degree of underground rivers gradually increases; time-series data for dominant hydrochemical indicators changed from HCO3·SO4-Ca·Mg during the dry season and HCO3-Ca·Mg during flood season to HCO3·Cl-Ca, HCO3·SO4-Ca, HCO3-Ca, and HCO3·SO4-Ca·Mg. Influenced by surface precipitation input, the groundwater chemistry of underground rivers varies greatly during the dry season and the flood season. Prior to urbanization,[Mg2+]/[Ca2+] and[HCO3-]/[SO42-] molar ratios are affected by water-rock interactions, agricultural activities, and acid rain infiltration, the average values of which were 0.86 and 29.34, respectively. After urbanization, agricultural activities and the contribution from acid rain decreased gradually. During the periods 1990-1995, 1996-2010, and 2011-2015, the main sensitive geochemical cations were Ca2+, Mg2+, Na+, and NH4+, and the main anions were HCO3-, HCO3-, and SO42-, and Cl-. The hydrochemical response of underground rivers to urbanization was characterized by clear temporal phases.

Genome-wide identification of GRF transcription factors in soybean and expression analysis of GmGRF family under shade stress.

BACKGROUND: The Growth-regulating factor (GRF) family encodes plant-specific transcription factors which contain two conserved domains, QLQ and WRC. Members of this family play vital roles in plant development and stress response processes. Although GRFs have been identified in various plant species, we still know little about the GRF family in soybean (Glycine max). RESULTS: In the present study, 22 GmGRFs distributed on 14 chromosomes and one scaffold were identified by searching soybean genome database and were clustered into five subgroups according to their phylogenetic relationships. GmGRFs belonging to the same subgroup shared a similar motif composition and gene structure. Synteny analysis revealed that large-scale duplications played key roles in the expansion of the GmGRF family. Tissue-specific expression data showed that GmGRFs were strongly expressed in growing tissues, including the shoot apical meristems, developing seeds and flowers, indicating that GmGRFs play critical roles in plant growth and development. On the basis of expression analysis of GmGRFs under shade conditions, we found that all GmGRFs responded to shade stress. Most GmGRFs were down-regulated in soybean leaves after shade treatment. CONCLUSIONS: Taken together, this research systematically analyzed the characterization of the GmGRF family and its primary roles in soybean development and shade stress response. Further studies of the function of the GmGRFs in the growth, development and stress tolerance of soybean, especially under shade stress, will be valuable.