Isolation, identification and whole-genome analysis of an Achromobacter strain with a novel sulfamethazine resistance gene and sulfamethazine degradation gene cluster.

A sulfamethazine (SM2) degrading strain, Achromobacter mucicolens JD417, was isolated from sulfonamide-contaminated sludge using gradient acclimation. Optimal SM2 degradation conditions were pH 7, 36 °C, and 5 % inoculum, achieving a theoretical maximum degradation rate of 48 % at 50 ppm SM2. Cell growth followed the Haldane equation across different SM2 concentrations. Whole-genome sequencing of the strain revealed novel functional annotations, including a sulfonamide resistance gene (sul4) encoding dihydropteroate synthase, two flavin-dependent monooxygenase genes (sadA and sadB) crucial for SM2 degradation, and unique genomic islands related to metabolism, pathogenicity, and resistance. Comparative genomics analysis showed good collinearity and homology with other Achromobacter species exhibiting organics resistance or degradation capabilities. This study reveals the novel molecular resistance and degradation mechanisms and genetic evolution of an SM2-degrading strain, providing insights into the bioremediation of sulfonamide-contaminated environments.

Environmental DNA metabarcoding reveals the effect of environmental selection on phytoplankton community structure along a subtropical river.

The Dongjiang River, a major tributary of the Pearl River system that supplies water to more than 40 million people in Guangdong Province and neighboring regions of China, harbors rich biodiversity, including many endemic and endangered species. However, human activities such as urbanization, agriculture, and industrialization have posed serious threats to its water quality and biodiversity. To assess the status and drivers of phytoplankton diversity, which is a key indicator of aquatic ecosystem health, this study used Environmental DNA (eDNA) metabarcoding combined with machine learning methods to explore spatial variations in the composition and structure of phytoplankton communities along the Dongjiang River, including its estuary. The results showed that phytoplankton diversity exhibited spatial distribution patterns, with higher community structure similarity and lower network complexity in the upstream than in the downstream regions. Environmental selection was the main mechanism shaping phytoplankton community composition, with natural factors driving the dominance of Pyrrophyta, Ochrophyta, and Cryptophyta in the upstream regions and estuaries. In contrast, the downstream regions was influenced by high concentrations of pollutants, resulting in increased abundance of Cryptophyta. The random forest model identified temperature, dissolved oxygen, chlorophyll a, NO2-, and NH4+ as the main factors influencing the primary phytoplankton communities and could be used to predict changes during wet periods. This study provides valuable insights into the factors influencing phytoplankton diversity and community composition in the Dongjiang River, and demonstrates the application value of eDNA metabarcoding technique in large-scale, long-distance river biodiversity monitoring.

The Influence of Alkali-Free Shotcrete Accelerators on Early Age Hydration and Property Development within Cement Systems.

Fluoride-containing alkali-free setting accelerators are a common type of admixture used in tunnel shotcrete but few studies in the literature focus on the effect of their fluoride compounds on the setting and hardening properties of accelerated cement paste under low environment temperatures. Tunnel shotcrete in cold regions or winter construction periods would be obviously influenced by low environment temperatures, especially for its fast setting and quick support applications. The objective of this work is to evaluate the early age hydration behavior of different accelerated cement pastes under 20 °C and 5 °C environment temperatures. In this study, setting time measurement, early age strength development, hydration ion leaching concentration, isothermal calorimetry, X-ray diffraction, and ESEM were performed on cement systems prepared with a non-fluoride alkali-free accelerator (aluminum sulfate solution with over 60% solid content) and a designed fluoride-containing alkali-free setting accelerator (aluminum sulfate and fluoride compound). The results showed that the fluorides obtained in alkali-free accelerators promote C3S dissolution and massive ettringite needles together with monosulfoaluminate (AFm) hydrate formation, thus leading to a quicker setting effect and low sensitivity to low environment temperatures than in non- fluoride groups. However, the rate of mechanical strength development of cement pastes hydrated within 24 h was decreased obviously when fluorine-containing alkali-free accelerator was used. This phenomenon is mainly related to the crystallization of thin-plate shape calcium fluoride (CaF2) formations and promoted conversion of ettringite to monosulfoaluminate hydrate in the accelerating period, thus weakening the denseness of C-S-H gel and inhibiting alite further hydration.

Bibliometric analysis of microbial sulfonamide degradation: Development, hotspots and trend directions.

Microbial sulfonamide degradation (MSD) is an efficient and safe treatment in both natural and engineered ecosystems. In order to systematically understand the research status and frontier trends of MSD, this study employed CiteSpace to conduct a bibliometric analysis of data from the Web of Science (WoS) and the China National Knowledge Infrastructure (CNKI) published from 2000 to 2021. During this time, China, Germany, Spain, the United States and Australia played leading roles by producing numerous high impact publications, while the Chinese Academy of Sciences was the leading research institution in this interdisciplinary research category. The Chemosphere was the top journal in terms of the number of citations. MSD research has gradually progressed from basic laboratory-based experiments to more complex environmental microbial communities and finally to deeper research on molecular mechanisms and engineering applications. Although multi-omics and synthetic community are the key techniques in the frontier research, they are also the current challenges in this field. A summary of published articles shows that Proteobacteria, Gammaproteobacteria, Burkholderiales and Alcaligenaceae are the most frequently observed MSD phylum, class, order and family, respectively, while Bacillus, Pseudomonas and Achromobacter are the top three MSD genera. To our knowledge, this study is the first to investigate the development and current challenges of MSD research, put forward future perspective, and form a relatively complete list of sulfonamide-degrading microorganisms for reference.

Keystone Species and Niche Differentiation Promote Microbial N, P, and COD Removal in Pilot Scale Constructed Wetlands Treating Domestic Sewage.

The microbial characteristics related to nitrogen (N), phosphorus (P), and chemical oxygen demand (COD) removal were investigated in three pilot scale constructed wetlands (CWs). Compared to horizontal subsurface flow (HSSF) and surface flow (SF) CWs, the aerobic vertical flow (VF) CW enriched more functional bacteria carrying genes for nitrification (nxrA, amoA), denitrification (nosZ), dephosphorization (phoD), and methane oxidation (mmoX), while the removal of COD, total P, and total N increased by 33.28%, 255.28%, and 299.06%, respectively. The co-occurrence network of functional bacteria in the HSSF CW was complex, with equivalent bacterial cooperation and competition. Both the VF and SF CWs exhibited a simple functional topological structure. The VF CW reduced functional redundancy by forming niche differentiation, which filtered out keystone species that were closely related to each other, thus achieving effective sewage purification. Alternatively, bacterial niche overlap protected a single function in the SF CW. Compared with the construction type, temperature, and plants had less effect on nutrient removal in the CWs from this subtropical region. Partial least-squares path modeling (PLS-PM) suggests that high dissolved oxygen and oxidation-reduction potential promoted a diverse bacterial community and that the nonkeystone bacteria reduced external stress for functional bacteria, thereby indirectly promoting nutrient removal.

Differences in bacterial N, P, and COD removal in pilot-scale constructed wetlands with varying flow types.

The mechanisms of bacterial nitrogen (N), phosphorus (P), and chemical oxygen demand (COD) removal in pilot-scale constructed wetlands (CWs) were investigated in the present work. Three types of CWs were assessed: vertical flow (VF), horizontal flow (HF), and surface flow (SF), each with three planting conditions, with either Thalia, Canna or without plants. The results show that construction types affected microbes more than planting conditions. VF CWs promoted the aerobic processing of total N, total P, COD, and NH3-N, increasing the respective removal efficiencies by 4-19%, 13-32%, 19-29%, and 75-80%, respectively, compared with SF CWs. The relative abundance of nitrifying, denitrifying, methanotrophic and dephosphorized bacteria, and functional genes such as nxrA, nirK, nosZ, mmoX, and phoD were higher in VF CWs. Positive and simple gene networks in VF CWs can effectively reduce the redundancy in functional genes, enhance bacterial function and gene interactions, thus promoting nutrient removal.

Biochar and crushed straw additions affect cadmium absorption in cassava-peanut intercropping system.

Cassava (Manihot esculenta Crantz) intercropped with peanut (Arachis hypogaea) has good complementary effects in time and space. In the field plot test, the land equivalent ratio (LER) of cassava-peanut intercropping system was 1.43, showing obvious intercropping yield advantage. Compared with monocropping, Cd contents in the roots of cassava and seeds of peanut were significantly reduced by 20.00% and 31.67%, respectively (p < 0.05). Under the unit area of hectare, compared with monocropping of cassava and peanut, the bioconcentration amount (BCA) of Cd in the intercropping system increased significantly by 24.98% and 25.59%, respectively (p < 0.05), and the metal removal equivalent ratio (MRER) of Cd was 1.25, indicating that the intercropping pattern had advantage in Cd removal. In the cement pool plot test, compared with the control, cassava intercropped with peanut under biochar and crushed straw additions did not only enhance the available nutrients and organic matter contents in rhizosphere soil but also promoted the crop growth and increased the content of chlorophyll (SPAD values) of plant leaves. The peanut seeds biomass under biochar and straw additions were significantly increased by 112.34% and 59.38% (p < 0.05), respectively, while the cassava roots biomass under biochar addition was significantly increased by 63.54% (p < 0.05). Applying biochar significantly decreased the content of Cd which extracted by diethylenetriaminepentaacetic acid (DTPA-Cd) in soil and reduced Cd uptake as well as translocation into plant tissues. The BCA of Cd of cassava under biochar addition decreased significantly by 53.87% in maturity stage (p < 0.05), thus reduced the ecological risk of Cd to crops and was of great significance to produce high quality and safe agricultural products. Besides, the crushed straw enhanced the biomass of crops, reduced Cd content in all tissues and maintained Cd uptake in the intercropping system. Therefore, it can realize the integration of ecological remediation and economic benefit of two energy plants in Cd contaminated soil after applied crushed straw in cassava-peanut intercropping system.