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1.
Biochem Biophys Rep ; 39: 101739, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38974020

RESUMEN

Mesenchymal stem cells (MSCs) have tremendous potential in cell therapy and regenerative medicine. The placenta-derived MSCs (PMSCs) are becoming favorable sources as they are ethically preferable and rich in MSCs. Although several subgroups of PMSCs have been identified from human term placenta, optimal sources for specific clinical applications remain to be elucidated. This study aimed to isolate MSCs from various components of the placenta, and compare their biological characteristics, including morphology, proliferation, immunophenotype, differentiation potential, growth factor and cytokine secretion, and immunomodulatory properties. Finally, four distinct groups of PMSCs were isolated from the placenta: amniotic membrane-derived MSCs (AM-MSCs), chorionic membrane-derived MSCs (CM-MSCs), chorionic plate-derived MSCs (CP-MSCs), and chorionic villi-derived MSCs (CV-MSCs). The results showed that CV-MSCs had good proliferation ability, and were easier to induce osteogenic and chondrogenic differentiation; CP-MSCs exhibited the strongest inhibitory effect on the proliferation of activated T cells, secreted high levels of EGF and IL-6, and could well differentiate into osteoblasts, adipocytes, and chondroblasts; AM-MSCs showed good growth dynamics in the early generations, were able to grow at high density, and tended to induce differentiation into osteogenic and neural lineages. These findings may provide novel evidence for the selection of seed cells in clinical application.

2.
J Affect Disord ; 350: 295-303, 2024 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-38211755

RESUMEN

BACKGROUND: There is evidence indicating that childhood maltreatment is linked to the occurrence of non-suicidal self-injury (NSSI). Nevertheless, the association between childhood maltreatment and the automatic-negative reinforcement aspect of NSSI remains understudied. Chapman's (2006) experiential avoidance model posits that the main factor in sustaining NSSI is negative reinforcement, specifically through the avoidance or escape from distressful emotional experiences. The current study examines a conceptual framework based on this theory and the available literature that explores the potential mediation role of alexithymia in the relation between childhood maltreatment and the automatic-negative reinforcement of NSSI. Additionally, this study investigates how this process may be influenced by individuals' attitudes toward seeking professional help. METHODS: 3657 adolescents (1616 females) completed questionnaires regarding childhood maltreatment, alexithymia, help-seeking attitudes, the NSSI, and its functions. RESULTS: The findings of the study exposed a positive link between childhood maltreatment and the automatic-negative reinforcement of NSSI, with the mediating role of alexithymia. Interestingly, it was unexpected to discover that individuals with high help-seeking attitudes experienced an intensification of the relationship between childhood maltreatment and both alexithymia and the automatic-negative reinforcement of NSSI. LIMITATION: The study's cross-sectional design hindered the inference of causality. CONCLUSION: The present study demonstrated that it is crucial to consider the impact of both alexithymia and help-seeking attitudes in adolescents who have experienced maltreatment. These findings hold implications for preventive interventions that target the reduction of NSSI behaviors driven by automatic-negative reinforcement.


Asunto(s)
Maltrato a los Niños , Conducta Autodestructiva , Adolescente , Femenino , Niño , Humanos , Síntomas Afectivos/epidemiología , Síntomas Afectivos/psicología , Estudios Transversales , Maltrato a los Niños/psicología , Emociones , Conducta Autodestructiva/psicología
3.
Artículo en Inglés | MEDLINE | ID: mdl-35565150

RESUMEN

Whilst effective public expenditure policies are essential for transforming the traditional factor-driven economy into a green and innovation-driven economy, the impacts of public expenditure's size and composition on green economic development have not been comprehensively investigated. This paper attempts to fill this research gap. Based on the data of Chinese prefecture-level cities from 2010 to 2018, we first measure green total factor productivity (GTFP), the proxy variable for green development, and briefly analyze its spatial-temporal trends. Then, using the dynamic panel models, dynamic panel mediation models, and dynamic panel threshold models, we evaluate how public expenditure affects GTFP. The main findings are fourfold: (1) there is a significant inverted U-shaped relationship between the expenditure size and GTFP. (2) The expansion of social expenditures and science and technology (S&T) and environmental protection expenditures play an important role in stimulating green growth, while economic expenditures and administrative expenditures have adverse effects. (3) Public expenditure mainly promotes green development through four channels: human capital accumulation, technological innovation, environmental quality improvement, and labor productivity increase. (4) The expenditure composition influences the turning point of the inverted U-shaped relationship. Based on these findings, we propose some targeted policy suggestions to promote green development.


Asunto(s)
Gastos en Salud , Gastos Públicos , China , Ciudades , Desarrollo Económico , Eficiencia , Humanos
4.
Brain Behav ; 8(5): e00966, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29761018

RESUMEN

Objective: This study's aim was to investigate the features and neural mechanisms of sustained attention in patients with mild traumatic brain injury (mTBI) by comparing and analyzing neuropsychological, behavioral, event-related potentials, and event-related desynchronization and synchronization between mTBI patients and healthy controls. Methods: Twenty mTBI patients with mTBI and 20 healthy controls underwent the Mini-Mental State Examination (MMSE) and a cued continuous performance task (AX-CPT). Neuropsychological, behavioral, and electroencephalogram (EEG) data were collected and analyzed. Results: There were significant differences between the mTBI group and the control group in their MMSE total scores, attention, and calculation, but there were no significant differences in orientation, memory, recall, and verbal scores. There were significant differences between the mTBI group and the control group in hitting the number, reaction time, and the number of errors of omission, but there were no significant differences in the number of false errors. The amplitude of Go-N2 and Nogo-N2 was significantly smaller for the mTBI group than that for the control group. The amplitude of Go-P3 was significantly smaller for the mTBI group than that for the control group, but not for the amplitude of Nogo-P3. The Go-αERS were significantly less for the mTBI group than for the control group during the 0-200 ms after the stimulus onset. The Go-αERD and Nogo-αERD were significantly less for the mTBI group than for the control group during the 600-1,000 ms after the stimulus onset. The Go-ßERS were significantly less for the mTBI group than for the control group during the 200-400 ms after the stimulus onset. There were no significant differences in the Nogo-αERS and Nogo-ßERD/ERS between the mTBI group and the control group. Conclusion: Patients with mTBI exhibited impairments in sustained attention and conflict monitoring, while response inhibition may have been spared.


Asunto(s)
Atención/fisiología , Conmoción Encefálica , Cognición/fisiología , Disfunción Cognitiva , Pruebas Neuropsicológicas , Adulto , Conmoción Encefálica/complicaciones , Conmoción Encefálica/diagnóstico , Conmoción Encefálica/psicología , China , Disfunción Cognitiva/diagnóstico , Disfunción Cognitiva/etiología , Disfunción Cognitiva/fisiopatología , Correlación de Datos , Señales (Psicología) , Electroencefalografía/métodos , Potenciales Evocados/fisiología , Femenino , Humanos , Masculino , Pruebas de Estado Mental y Demencia , Persona de Mediana Edad , Tiempo de Reacción/fisiología
5.
J Breath Res ; 9(2): 026004, 2015 Apr 20.
Artículo en Inglés | MEDLINE | ID: mdl-25891856

RESUMEN

With ascent to altitude, certain individuals are susceptible to high altitude pulmonary edema (HAPE), which in turn can cause disability and even death. The ability to identify individuals at risk of HAPE prior to ascent is poor. The present study examined the profile of volatile organic compounds (VOC) in exhaled breath condensate (EBC) and pulmonary artery systolic pressures (PASP) before and after exposure to normobaric hypoxia (12% O2) in healthy males with and without a history of HAPE (Hx HAPE, n = 5; Control, n = 11). In addition, hypoxic ventilatory response (HVR), and PASP response to normoxic exercise were also measured. Auto-regression/partial least square regression of whole gas chromatography/mass spectrometry (GC/MS) data and binary logistic regression (BLR) of individual GC peaks and physiologic parameters resulted in models that separate individual subjects into their groups with variable success. The result of BLR analysis highlights HVR, PASP response to hypoxia and the amount of benzyl alcohol and dimethylbenzaldehyde dimethyl in expired breath as markers of HAPE history. These findings indicate the utility of EBC VOC analysis to discriminate between individuals with and without a history of HAPE and identified potential novel biomarkers that correlated with physiological responses to hypoxia.


Asunto(s)
Mal de Altura/metabolismo , Hipertensión Pulmonar/metabolismo , Hipoxia/metabolismo , Arteria Pulmonar/fisiopatología , Compuestos Orgánicos Volátiles/metabolismo , Adolescente , Adulto , Altitud , Mal de Altura/fisiopatología , Presión Sanguínea , Pruebas Respiratorias , Estudios de Casos y Controles , Análisis Discriminante , Ecocardiografía Doppler , Prueba de Esfuerzo , Cromatografía de Gases y Espectrometría de Masas , Humanos , Hipertensión Pulmonar/fisiopatología , Hipoxia/fisiopatología , Masculino , Consumo de Oxígeno , Medición de Riesgo , Compuestos Orgánicos Volátiles/análisis , Adulto Joven
6.
PLoS One ; 9(4): e95331, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24748102

RESUMEN

BACKGROUND: An important challenge to pulmonary arterial hypertension (PAH) diagnosis and treatment is early detection of occult pulmonary vascular pathology. Symptoms are frequently confused with other disease entities that lead to inappropriate interventions and allow for progression to advanced states of disease. There is a significant need to develop new markers for early disease detection and management of PAH. METHODOLGY AND FINDINGS: Exhaled breath condensate (EBC) samples were compared from 30 age-matched normal healthy individuals and 27 New York Heart Association functional class III and IV idiopathic pulmonary arterial hypertenion (IPAH) patients, a subgroup of PAH. Volatile organic compounds (VOC) in EBC samples were analyzed using gas chromatography/mass spectrometry (GC/MS). Individual peaks in GC profiles were identified in both groups and correlated with pulmonary hemodynamic and clinical endpoints in the IPAH group. Additionally, GC/MS data were analyzed using autoregression followed by partial least squares regression (AR/PLSR) analysis to discriminate between the IPAH and control groups. After correcting for medicaitons, there were 62 unique compounds in the control group, 32 unique compounds in the IPAH group, and 14 in-common compounds between groups. Peak-by-peak analysis of GC profiles of IPAH group EBC samples identified 6 compounds significantly correlated with pulmonary hemodynamic variables important in IPAH diagnosis. AR/PLSR analysis of GC/MS data resulted in a distinct and identifiable metabolic signature for IPAH patients. CONCLUSIONS: These findings indicate the utility of EBC VOC analysis to discriminate between severe IPAH and a healthy population; additionally, we identified potential novel biomarkers that correlated with IPAH pulmonary hemodynamic variables that may be important in screening for less severe forms IPAH.


Asunto(s)
Pruebas Respiratorias , Hipertensión Pulmonar/metabolismo , Compuestos Orgánicos Volátiles/análisis , Cromatografía de Gases y Espectrometría de Masas , Humanos , Análisis de los Mínimos Cuadrados
7.
Chembiochem ; 15(7): 1040-8, 2014 May 05.
Artículo en Inglés | MEDLINE | ID: mdl-24719290

RESUMEN

Volatile organic compounds (VOCs) emanating from humans have the potential to revolutionize non-invasive diagnostics. Yet, little is known about how these compounds are generated by complex biological systems, and even less is known about how these compounds are reflective of a particular physiological state. In this proof-of-concept study, we examined VOCs produced directly at the cellular level from B lymphoblastoid cells upon infection with three live influenza virus subtypes: H9N2 (avian), H6N2 (avian), and H1N1 (human). Using a single cell line helped to alleviate some of the complexity and variability when studying VOC production by an entire organism, and it allowed us to discern marked differences in VOC production upon infection of the cells. The patterns of VOCs produced in response to infection were unique for each virus subtype, while several other non-specific VOCs were produced after infections with all three strains. Also, there was a specific time course of VOC release post infection. Among emitted VOCs, production of esters and other oxygenated compounds was particularly notable, and these may be attributed to increased oxidative stress resulting from infection. Elucidating VOC signatures that result from the host cells response to infection may yield an avenue for non-invasive diagnostics and therapy of influenza and other viral infections.


Asunto(s)
Linfocitos B/metabolismo , Subtipo H1N1 del Virus de la Influenza A/metabolismo , Subtipo H9N2 del Virus de la Influenza A/metabolismo , Gripe Humana/virología , Linfocitos B/citología , Linfocitos B/virología , Biomarcadores/metabolismo , Línea Celular , Cromatografía de Gases y Espectrometría de Masas , Humanos , Gripe Humana/metabolismo , Gripe Humana/patología , Compuestos Orgánicos Volátiles/análisis , Compuestos Orgánicos Volátiles/metabolismo
8.
Anal Chem ; 86(5): 2481-8, 2014 Mar 04.
Artículo en Inglés | MEDLINE | ID: mdl-24484549

RESUMEN

The viability of the multibillion dollar global citrus industry is threatened by the "green menace", citrus greening disease (Huanglongbing, HLB), caused by the bacterial pathogen Candidatus Liberibacter. The long asymptomatic stage of HLB makes it challenging to detect emerging regional infections early to limit disease spread. We have established a novel method of disease detection based on chemical analysis of released volatile organic compounds (VOCs) that emanate from infected trees. We found that the biomarkers "fingerprint" is specific to the causal pathogen and could be interpreted using analytical methods such as gas chromatography/mass spectrometry (GC/MS) and gas chromatography/differential mobility spectrometry (GC/DMS). This VOC-based disease detection method has a high accuracy of ∼90% throughout the year, approaching 100% under optimal testing conditions, even at very early stages of infection where other methods are not adequate. Detecting early infection based on VOCs precedes visual symptoms and DNA-based detection techniques (real-time polymerase chain reaction, RT-PCR) and can be performed at a substantially lower cost and with rapid field deployment.


Asunto(s)
Helicobacter/aislamiento & purificación , Enfermedades de las Plantas/microbiología , Análisis Espectral/métodos , Cromatografía de Gases y Espectrometría de Masas , Compuestos Orgánicos Volátiles/análisis
9.
PLoS One ; 8(9): e74256, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24086326

RESUMEN

Next-generation sequencing was exploited to gain deeper insight into the response to infection by Candidatus liberibacter asiaticus (CaLas), especially the immune disregulation and metabolic dysfunction caused by source-sink disruption. Previous fruit transcriptome data were compared with additional RNA-Seq data in three tissues: immature fruit, and young and mature leaves. Four categories of orchard trees were studied: symptomatic, asymptomatic, apparently healthy, and healthy. Principal component analysis found distinct expression patterns between immature and mature fruits and leaf samples for all four categories of trees. A predicted protein - protein interaction network identified HLB-regulated genes for sugar transporters playing key roles in the overall plant responses. Gene set and pathway enrichment analyses highlight the role of sucrose and starch metabolism in disease symptom development in all tissues. HLB-regulated genes (glucose-phosphate-transporter, invertase, starch-related genes) would likely determine the source-sink relationship disruption. In infected leaves, transcriptomic changes were observed for light reactions genes (downregulation), sucrose metabolism (upregulation), and starch biosynthesis (upregulation). In parallel, symptomatic fruits over-expressed genes involved in photosynthesis, sucrose and raffinose metabolism, and downregulated starch biosynthesis. We visualized gene networks between tissues inducing a source-sink shift. CaLas alters the hormone crosstalk, resulting in weak and ineffective tissue-specific plant immune responses necessary for bacterial clearance. Accordingly, expression of WRKYs (including WRKY70) was higher in fruits than in leaves. Systemic acquired responses were inadequately activated in young leaves, generally considered the sites where most new infections occur.


Asunto(s)
Citrus/genética , Redes Reguladoras de Genes , Enfermedades de las Plantas/genética , Citrus/microbiología , Reacción en Cadena de la Polimerasa , Transcriptoma
10.
PLoS One ; 7(5): e38039, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22675433

RESUMEN

Huanglongbing (HLB) or "citrus greening" is the most destructive citrus disease worldwide. In this work, we studied host responses of citrus to infection with Candidatus Liberibacter asiaticus (CaLas) using next-generation sequencing technologies. A deep mRNA profile was obtained from peel of healthy and HLB-affected fruit. It was followed by pathway and protein-protein network analysis and quantitative real time PCR analysis of highly regulated genes. We identified differentially regulated pathways and constructed networks that provide a deep insight into the metabolism of affected fruit. Data mining revealed that HLB enhanced transcription of genes involved in the light reactions of photosynthesis and in ATP synthesis. Activation of protein degradation and misfolding processes were observed at the transcriptomic level. Transcripts for heat shock proteins were down-regulated at all disease stages, resulting in further protein misfolding. HLB strongly affected pathways involved in source-sink communication, including sucrose and starch metabolism and hormone synthesis and signaling. Transcription of several genes involved in the synthesis and signal transduction of cytokinins and gibberellins was repressed while that of genes involved in ethylene pathways was induced. CaLas infection triggered a response via both the salicylic acid and jasmonic acid pathways and increased the transcript abundance of several members of the WRKY family of transcription factors. Findings focused on the fruit provide valuable insight to understanding the mechanisms of the HLB-induced fruit disorder and eventually developing methods based on small molecule applications to mitigate its devastating effects on fruit production.


Asunto(s)
Citrus/genética , Enfermedades de las Plantas/genética , Enfermedades de las Plantas/microbiología , Transcriptoma , Análisis de Varianza , Metabolismo de los Hidratos de Carbono/genética , Citrus/inmunología , Citrus/microbiología , Biología Computacional , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Secuenciación de Nucleótidos de Alto Rendimiento , Modelos Biológicos , Fotosíntesis/genética , Enfermedades de las Plantas/inmunología , Reguladores del Crecimiento de las Plantas/metabolismo , Pliegue de Proteína , Estabilidad Proteica , Rhizobiaceae , Transducción de Señal , Factores de Transcripción/genética
11.
Chembiochem ; 13(7): 1053-9, 2012 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-22488873

RESUMEN

The major histocompatibility complex (MHC), or human leukocyte antigen (HLA) gene-coding region in humans, plays a significant role in infectious disease response, autoimmunity, and cellular recognition. This super locus is essential in mate selection and kin recognition because of the organism-specific odor which can be perceived by other individuals. However, how the unique MHC genetic combination of an organism correlates with generation of the organism-specific odor is not well understood. In the present work, we have shown that human B-cells produce a set of volatile organic compounds (VOCs) that can be measured by GC-MS. More importantly, our results show that specific HLA alleles are related to production of selected VOCs, and that this leads to a cell-specific odor "fingerprint". We used a C1R HLA class I A and B locus negative cell line, along with C1R cell lines that were stably transfected with specific A and B alleles. Our work demonstrates for the first time that HLA alleles can directly influence production of specific odor compounds at the cellular level. Given that the resulting odor fingerprint depends on expression of specific HLA sequences, it may yield information on unique human scent profiles, composition of exhaled breath, as well as immune response states in future studies.


Asunto(s)
Antígenos HLA/química , Antígenos de Histocompatibilidad Clase I/química , Compuestos Orgánicos Volátiles/química , Pruebas Respiratorias/métodos , Línea Celular , Cromatografía de Gases y Espectrometría de Masas , Antígenos HLA/genética , Antígenos HLA/inmunología , Antígenos de Histocompatibilidad Clase I/genética , Antígenos de Histocompatibilidad Clase I/inmunología , Humanos , Odorantes , Transfección , Compuestos Orgánicos Volátiles/metabolismo
12.
Artif Intell Med ; 52(1): 1-9, 2011 May.
Artículo en Inglés | MEDLINE | ID: mdl-21515033

RESUMEN

OBJECTIVE: This paper introduces a modified artificial immune system (AIS)-based pattern recognition method to enhance the recognition ability of the existing conventional AIS-based classification approach and demonstrates the superiority of the proposed new AIS-based method via two case studies of breast cancer diagnosis. METHODS AND MATERIALS: Conventionally, the AIS approach is often coupled with the k nearest neighbor (k-NN) algorithm to form a classification method called AIS-kNN. In this paper we discuss the basic principle and possible problems of this conventional approach, and propose a new approach where AIS is integrated with the radial basis function--partial least square regression (AIS-RBFPLS). Additionally, both the two AIS-based approaches are compared with two classical and powerful machine learning methods, back-propagation neural network (BPNN) and orthogonal radial basis function network (Ortho-RBF network). RESULTS: The diagnosis results show that: (1) both the AIS-kNN and the AIS-RBFPLS proved to be a good machine leaning method for clinical diagnosis, but the proposed AIS-RBFPLS generated an even lower misclassification ratio, especially in the cases where the conventional AIS-kNN approach generated poor classification results because of possible improper AIS parameters. For example, based upon the AIS memory cells of "replacement threshold=0.3", the average misclassification ratios of two approaches for study 1 are 3.36% (AIS-RBFPLS) and 9.07% (AIS-kNN), and the misclassification ratios for study 2 are 19.18% (AIS-RBFPLS) and 28.36% (AIS-kNN); (2) the proposed AIS-RBFPLS presented its robustness in terms of the AIS-created memory cells, showing a smaller standard deviation of the results from the multiple trials than AIS-kNN. For example, using the result from the first set of AIS memory cells as an example, the standard deviations of the misclassification ratios for study 1 are 0.45% (AIS-RBFPLS) and 8.71% (AIS-kNN) and those for study 2 are 0.49% (AIS-RBFPLS) and 6.61% (AIS-kNN); and (3) the proposed AIS-RBFPLS classification approaches also yielded better diagnosis results than two classical neural network approaches of BPNN and Ortho-RBF network. CONCLUSION: In summary, this paper proposed a new machine learning method for complex systems by integrating the AIS system with RBFPLS. This new method demonstrates its satisfactory effect on classification accuracy for clinical diagnosis, and also indicates its wide potential applications to other diagnosis and detection problems.


Asunto(s)
Inteligencia Artificial , Neoplasias de la Mama/diagnóstico , Reconocimiento de Normas Patrones Automatizadas/métodos , Algoritmos , Células Artificiales , Neoplasias de la Mama/clasificación , Neoplasias de la Mama/inmunología , Análisis por Conglomerados , Femenino , Humanos , Sistema Inmunológico
13.
Crit Rev Immunol ; 30(3): 277-89, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20370635

RESUMEN

The rapid and unabated spread of vector-borne diseases within US specialty crops threatens our agriculture, our economy, and the livelihood of growers and farm workers. Early detection of vector-borne pathogens is an essential step for the accurate surveillance and management of vector-borne diseases of specialty crops. Currently, we lack the tools that would detect the infectious agent at early (primary) stages of infection with a high degree of sensitivity and specificity. In this paper, we outline a strategy for developing an integrated suite of platform technologies to enable rapid, early disease detection and diagnosis of huanglongbing (HLB), the most destructive citrus disease. The research has two anticipated outcomes: i) identification of very early, disease-specific biomarkers using a knowledge base of translational genomic information on host and pathogen responses associated with early (asymptomatic) disease development; and ii) development and deployment of novel sensors that capture these and other related biomarkers and aid in presymptomatic disease detection. By combining these two distinct approaches, it should be possible to identify and defend the crop by interdicting pathogen spread prior to the rapid expansion phase of the disease. We believe that similar strategies can also be developed for the surveillance and management of diseases affecting other economically important specialty crops.


Asunto(s)
Productos Agrícolas/inmunología , Productos Agrícolas/microbiología , Interacciones Huésped-Patógeno/fisiología , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/terapia , Biomarcadores , Citrus/inmunología , Citrus/metabolismo , Citrus/microbiología , Interacciones Huésped-Patógeno/inmunología , Enfermedades de las Plantas/inmunología , Factores de Tiempo
14.
Anal Chim Acta ; 651(1): 15-23, 2009 Sep 28.
Artículo en Inglés | MEDLINE | ID: mdl-19733729

RESUMEN

This paper introduces the ant colony algorithm, a novel swarm intelligence based optimization method, to select appropriate wavelet coefficients from mass spectral data as a new feature selection method for ovarian cancer diagnostics. By determining the proper parameters for the ant colony algorithm (ACA) based searching algorithm, we perform the feature searching process for 100 times with the number of selected features fixed at 5. The results of this study show: (1) the classification accuracy based on the five selected wavelet coefficients can reach up to 100% for all the training, validating and independent testing sets; (2) the eight most popular selected wavelet coefficients of the 100 runs can provide 100% accuracy for the training set, 100% accuracy for the validating set, and 98.8% accuracy for the independent testing set, which suggests the robustness and accuracy of the proposed feature selection method; and (3) the mass spectral data corresponding to the eight popular wavelet coefficients can be located by reverse wavelet transformation and these located mass spectral data still maintain high classification accuracies (100% for the training set, 97.6% for the validating set, and 98.8% for the testing set) and also provide sufficient physical and medical meaning for future ovarian cancer mechanism studies. Furthermore, the corresponding mass spectral data (potential biomarkers) are in good agreement with other studies which have used the same sample set. Together these results suggest this feature extraction strategy will benefit the development of intelligent and real-time spectroscopy instrumentation based diagnosis and monitoring systems.


Asunto(s)
Algoritmos , Espectrometría de Masas/métodos , Proteómica/métodos , Proteínas Sanguíneas/química , Femenino , Humanos , Neoplasias Ováricas/diagnóstico
15.
Anal Chim Acta ; 647(1): 46-53, 2009 Aug 04.
Artículo en Inglés | MEDLINE | ID: mdl-19576384

RESUMEN

This study introduces two-dimensional (2-D) wavelet analysis to the classification of gas chromatogram differential mobility spectrometry (GC/DMS) data which are composed of retention time, compensation voltage, and corresponding intensities. One reported method to process such large data sets is to convert 2-D signals to 1-D signals by summing intensities either across retention time or compensation voltage, but it can lose important signal information in one data dimension. A 2-D wavelet analysis approach keeps the 2-D structure of original signals, while significantly reducing data size. We applied this feature extraction method to 2-D GC/DMS signals measured from control and disordered fruit and then employed two typical classification algorithms to testify the effects of the resultant features on chemical pattern recognition. Yielding a 93.3% accuracy of separating data from control and disordered fruit samples, 2-D wavelet analysis not only proves its feasibility to extract feature from original 2-D signals but also shows its superiority over the conventional feature extraction methods including converting 2-D to 1-D and selecting distinguishable pixels from training set. Furthermore, this process does not require coupling with specific pattern recognition methods, which may help ensure wide applications of this method to 2-D spectrometry data.


Asunto(s)
Cromatografía de Gases/métodos , Algoritmos , Cromatografía de Gases/clasificación , Frutas/química , Reconocimiento de Normas Patrones Automatizadas , Análisis de Componente Principal
16.
J Air Waste Manag Assoc ; 59(3): 321-31, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19320270

RESUMEN

Aerosol composition data from the Speciation Trends Network (STN) site (East 14th Street) in Cleveland, OH, were analyzed by advanced receptor model methods for source apportionment as well as by the standard positive matrix factorization (PMF) using PMF2. These different models are used in combination to test model limitations. These data were 24-hr average mass concentrations and compositions obtained for samples taken every third day from 2001 to 2003. The Multilinear Engine (ME) was used to solve an expanded model to estimate the source profiles and source contributions and also to investigate the wind speed, wind direction, time-of-day, weekend/weekday, and seasonal effects. PMF2 was applied to the same dataset. Potential source contribution function (PSCF) and conditional probability function (CPF) analyses were used to locate the regional and local sources using the resolved source contributions and appropriate meteorological data. Very little difference was observed between the results of the expanded model and the PMF2 values for the profiles and source contribution time series. The identified sources were as ferrous smelter, secondary sulfate, secondary nitrate, soil/combustion mixture, steel mill, traffic, wood smoke, and coal burning. The CPF analysis was useful in helping to identify local sources, whereas the PSCF results were only useful for regional source areas. Both of these analyses were more useful than the wind directional factor derived from the expanded factor analysis. However, the expanded analysis provided direct information on seasonality and day-of-week behavior of the sources.


Asunto(s)
Aerosoles/análisis , Contaminantes Atmosféricos/análisis , Material Particulado/análisis , Aerosoles/química , Contaminantes Atmosféricos/química , Carbón Mineral , Monitoreo del Ambiente , Hierro , Metalurgia , Nitratos/análisis , Nitratos/química , Ohio , Material Particulado/química , Humo/análisis , Suelo , Sulfatos/análisis , Sulfatos/química , Emisiones de Vehículos/análisis , Viento
17.
Anal Chim Acta ; 628(2): 155-61, 2008 Nov 03.
Artículo en Inglés | MEDLINE | ID: mdl-18929003

RESUMEN

Analytical instruments that can measure small amounts of chemicals in complicated biological samples are often useful as diagnostic tools. However, it can be challenging to optimize these sensors using actual clinical samples, given the heterogeneous background and composition of the test materials. Here we use gas chromatography-differential mobility spectrometry (GC/DMS) to analyze the chemical content of human exhaled breath condensate (EBC). Ultimately, this system can be used for non-invasive disease diagnostics. Many parameters can be adjusted within this instrument system, and we implemented a factorial design-of-experiments to systematically test several combinations of parameter settings while concurrently analyzing effects and interactions. We examined four parameters that affect sensitivity and detection for our instrument, requiring a 2(4) factorial design. We optimized sensor function using EBC samples spiked with acetone, a known clinical biomarker in breath. Two outputs were recorded for each experiment combination: number of chemicals detected, and the amplitude of acetone signal. Our goal is to find the best parameter combination that yields the highest acetone peak while also preserving the largest number of other chemical peaks in the spectra. By optimizing the system, we can conduct further clinical experiments with our sensor more efficiently and accurately.


Asunto(s)
Pruebas Respiratorias , Cromatografía de Gases , Microquímica , Proyectos de Investigación , Análisis Espectral , Acetona/análisis , Pruebas Respiratorias/instrumentación , Pruebas Respiratorias/métodos , Cromatografía de Gases/instrumentación , Cromatografía de Gases/métodos , Humanos , Microquímica/instrumentación , Microquímica/métodos , Estándares de Referencia , Sensibilidad y Especificidad , Análisis Espectral/instrumentación , Análisis Espectral/métodos
18.
Algorithms ; 1(2): 130-152, 2008 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-20191110

RESUMEN

Sensors have been widely used for disease diagnosis, environmental quality monitoring, food quality control, industrial process analysis and control, and other related fields. As a key tool for sensor data analysis, machine learning is becoming a core part of novel sensor design. Dividing a complete machine learning process into three steps: data pre-treatment, feature extraction and dimension reduction, and system modeling, this paper provides a review of the methods that are widely used for each step. For each method, the principles and the key issues that affect modeling results are discussed. After reviewing the potential problems in machine learning processes, this paper gives a summary of current algorithms in this field and provides some feasible directions for future studies.

19.
J Expo Sci Environ Epidemiol ; 17(6): 549-58, 2007 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-17505504

RESUMEN

Various methods have been developed recently to estimate personal exposures to ambient particulate matter less than 2.5 microm in diameter (PM2.5) using fixed outdoor monitors as well as personal exposure monitors. One class of estimators involves extrapolating values using ambient-source components of PM2.5, such as sulfate and iron. A key step in extrapolating these values is to correct for differences in infiltration characteristics of the component used in extrapolation (such as sulfate within PM2.5) and PM2.5. When this is not done, resulting health effect estimates will be biased. Another class of approaches involves factor analysis methods such as positive matrix factorization (PMF). Using either an extrapolation or a factor analysis method in conjunction with regression calibration allows one to estimate the direct effects of ambient PM2.5 on health, eliminating bias caused by using fixed outdoor monitors and estimated personal ambient PM2.5 concentrations. Several forms of the extrapolation method are defined, including some new ones. Health effect estimates that result from the use of these methods are compared with those from an expanded PMF analysis using data collected from a health study of asthmatic children conducted in Denver, Colorado. Examining differences in health effect estimates among the various methods using a measure of lung function (forced expiratory volume in 1 s) as the health indicator demonstrated the importance of the correction factor(s) in the extrapolation methods and that PMF yielded results comparable with the extrapolation methods that incorporated correction factors.


Asunto(s)
Contaminantes Atmosféricos/análisis , Exposición a Riesgos Ambientales/análisis , Volumen Espiratorio Forzado , Modelos Biológicos , Material Particulado/análisis , Monitoreo del Ambiente , Humanos , Hierro/análisis , Tamaño de la Partícula , Sulfatos/análisis
20.
Environ Sci Technol ; 39(4): 1129-37, 2005 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-15773486

RESUMEN

An expanded factor analysis model (ME-2) that is capable of taking into account the influence of independent variables such as wind speed, wind direction, time of year and other variables of the measured fine particle matter (PM2.5) concentration data was utilized for identifying sources of airborne pollutants and providing quantitative estimations of the contribution of each source. The chemical composition data used in this study were obtained from PM2.5 samples collected using the Interagency Monitoring of Protected Visual Environments samplers from August 1999 to December 2001 at an urban monitoring site in Washington, DC. The expanded model has been applied to two different data sets based on the particulate carbon variables. Such an approach had been successfully applied previously and provided improved source resolution in simulated and ambient concentration data. Initially, total OC and EC were used in the expanded model and were compared to the results using conventional positive matrix factorization that had been done previously using the individual carbon fractions data. In the other expanded model analysis, the eight carbon fractions were used during the modeling in order to ascertain if additional source information could be extracted from the data. In both cases, it was possible to separate diesel from spark-ignition vehicles. The use of the individual carbon fractions in the model provides information on what appears to be secondary organic aerosol formation.


Asunto(s)
Contaminantes Atmosféricos/análisis , Monitoreo del Ambiente , Análisis Factorial , Carbono/análisis , District of Columbia , Modelos Teóricos , Tamaño de la Partícula , Factores de Tiempo , Emisiones de Vehículos/análisis
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