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1.
Adv Sci (Weinh) ; : e2310282, 2024 Sep 23.
Artículo en Inglés | MEDLINE | ID: mdl-39308190

RESUMEN

Heterotopic ossification (HO), often arising in response to traumatic challenges, results from the aberrant osteochondral differentiation of mesenchymal stem cells (MSCs). Nevertheless, the impact of trauma-induced inflammatory exposure on MSC fate determination remains ambiguous. In this study, the cellular diversity within inflammatory lesions is elucidated, comprising MSCs and several innate and adaptive immune cells. It is observed that quiescent MSCs transition into cycling MSCs, subsequently giving rise to chondrogenic (cMSC) and/or osteogenic (oMSC) lineages within the inflammatory microenvironment following muscle or tendon injuries, as revealed through single-cell RNA sequencing (scRNA-seq), spatial transcriptome and lineage tracing analysis. Moreover, these investigations demonstrate that neutrophils and natural killer (NK) cells enhance transition of quiescent MSCs into cycling MSCs, which is also controlled by M1 macrophages, a subpopulation of macrophages can also stimulate cMSC and oMSC production from cycling MSCs. Additionally, M2 macrophages, CD4+ and CD8+ T lymphocytes are found to promote chondrogenesis. Further analysis demonstrates that immune cells promotes the activation of signaling transducers and activators of transcription (STAT) pathway and phosphoinositide 3 (PI3K)/protein kinase B (AKT) pathway in MSC proliferation and osteochondral progenitors' production, respectively. These findings highlight the dynamics of MSC fate within the inflammatory lesion and unveil the molecular landscape of osteoimmunological interactions, which holds promise for advancing HO treatment.

2.
Nucleic Acids Res ; 46(3): e17, 2018 02 16.
Artículo en Inglés | MEDLINE | ID: mdl-29165646

RESUMEN

Protein-protein interaction (PPI) network maintains proper function of all organisms. Simple high-throughput technologies are desperately needed to delineate the landscape of PPI networks. While recent state-of-the-art yeast two-hybrid (Y2H) systems improved screening efficiency, either individual colony isolation, library preparation arrays, gene barcoding or massive sequencing are still required. Here, we developed a recombination-based 'library vs library' Y2H system (RLL-Y2H), by which multi-library screening can be accomplished in a single pool without any individual treatment. This system is based on the phiC31 integrase-mediated integration between bait and prey plasmids. The integrated fragments were digested by MmeI and subjected to deep sequencing to decode the interaction matrix. We applied this system to decipher the trans-kingdom interactome between Mycobacterium tuberculosis and host cells and further identified Rv2427c interfering with the phagosome-lysosome fusion. This concept can also be applied to other systems to screen protein-RNA and protein-DNA interactions and delineate signaling landscape in cells.


Asunto(s)
Proteínas Relacionadas con la Autofagia/genética , Proteínas Bacterianas/genética , Biblioteca de Genes , Ensayos Analíticos de Alto Rendimiento , Interacciones Huésped-Patógeno/genética , Mycobacterium tuberculosis/genética , Animales , Proteínas Relacionadas con la Autofagia/clasificación , Proteínas Relacionadas con la Autofagia/metabolismo , Proteínas Bacterianas/clasificación , Proteínas Bacterianas/metabolismo , Sistemas CRISPR-Cas , Desoxirribonucleasas de Localización Especificada Tipo II/química , Edición Génica/métodos , Genes Reporteros , Secuenciación de Nucleótidos de Alto Rendimiento , Integrasas/genética , Integrasas/metabolismo , Proteínas Luminiscentes/genética , Proteínas Luminiscentes/metabolismo , Ratones , Mycobacterium tuberculosis/metabolismo , Fagosomas/metabolismo , Fagosomas/microbiología , Plásmidos/química , Plásmidos/metabolismo , Mapeo de Interacción de Proteínas/métodos , Células RAW 264.7 , Recombinación Genética , Siphoviridae/química , Técnicas del Sistema de Dos Híbridos , Proteína Fluorescente Roja
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