Efficient Aggressive Behavior Recognition of Pigs Based on Temporal Shift Module.

Aggressive behavior among pigs is a significant social issue that has severe repercussions on both the profitability and welfare of pig farms. Due to the complexity of aggression, recognizing it requires the consideration of both spatial and temporal features. To address this problem, we proposed an efficient method that utilizes the temporal shift module (TSM) for automatic recognition of pig aggression. In general, TSM is inserted into four 2D convolutional neural network models, including ResNet50, ResNeXt50, DenseNet201, and ConvNext-t, enabling the models to process both spatial and temporal features without increasing the model parameters and computational complexity. The proposed method was evaluated on the dataset established in this study, and the results indicate that the ResNeXt50-T (TSM inserted into ResNeXt50) model achieved the best balance between recognition accuracy and model parameters. On the test set, the ResNeXt50-T model achieved accuracy, recall, precision, F1 score, speed, and model parameters of 95.69%, 95.25%, 96.07%, 95.65%, 29 ms, and 22.98 M, respectively. These results show that the proposed method can effectively improve the accuracy of recognizing pig aggressive behavior and provide a reference for behavior recognition in actual scenarios of smart livestock farming.

Poly(A)-binding protein is an ataxin-2 chaperone that regulates biomolecular condensates.

Biomolecular condensation underlies the biogenesis of an expanding array of membraneless assemblies, including stress granules (SGs), which form under a variety of cellular stresses. Advances have been made in understanding the molecular grammar of a few scaffold proteins that make up these phases, but how the partitioning of hundreds of SG proteins is regulated remains largely unresolved. While investigating the rules that govern the condensation of ataxin-2, an SG protein implicated in neurodegenerative disease, we unexpectedly identified a short 14 aa sequence that acts as a condensation switch and is conserved across the eukaryote lineage. We identify poly(A)-binding proteins as unconventional RNA-dependent chaperones that control this regulatory switch. Our results uncover a hierarchy of cis and trans interactions that fine-tune ataxin-2 condensation and reveal an unexpected molecular function for ancient poly(A)-binding proteins as regulators of biomolecular condensate proteins. These findings may inspire approaches to therapeutically target aberrant phases in disease.

Circadian clocks are modulated by compartmentalized oscillating translation.

Terrestrial organisms developed circadian rhythms for adaptation to Earth's quasi-24-h rotation. Achieving precise rhythms requires diurnal oscillation of fundamental biological processes, such as rhythmic shifts in the cellular translational landscape; however, regulatory mechanisms underlying rhythmic translation remain elusive. Here, we identified mammalian ATXN2 and ATXN2L as cooperating master regulators of rhythmic translation, through oscillating phase separation in the suprachiasmatic nucleus along circadian cycles. The spatiotemporal oscillating condensates facilitate sequential initiation of multiple cycling processes, from mRNA processing to protein translation, for selective genes including core clock genes. Depleting ATXN2 or 2L induces opposite alterations to the circadian period, whereas the absence of both disrupts translational activation cycles and weakens circadian rhythmicity in mice. Such cellular defect can be rescued by wild type, but not phase-separation-defective ATXN2. Together, we revealed that oscillating translation is regulated by spatiotemporal condensation of two master regulators to achieve precise circadian rhythm in mammals.

A Machine Learning Framework Based on Extreme Gradient Boosting to Predict the Occurrence and Development of Infectious Diseases in Laying Hen Farms, Taking H9N2 as an Example.

The H9N2 avian influenza virus has become one of the dominant subtypes of avian influenza virus in poultry and has been significantly harmful to chickens in China, with great economic losses in terms of reduced egg production or high mortality by co-infection with other pathogens. A prediction of H9N2 status based on easily available production data with high accuracy would be important and essential to prevent and control H9N2 outbreaks in advance. This study developed a machine learning framework based on the XGBoost classification algorithm using 3 months' laying rates and mortalities collected from three H9N2-infected laying hen houses with complete onset cycles. A framework was developed to automatically predict the H9N2 status of individual house for future 3 days (H9N2 status + 0, H9N2 status + 1, H9N2 status + 2) with five time frames (day + 0, day - 1, day - 2, day - 3, day - 4). It had been proven that a high accuracy rate > 90%, a recall rate > 90%, a precision rate of >80%, and an area under the curve of the receiver operator characteristic ≥ 0.85 could be achieved with the prediction models. Models with day + 0 and day - 1 were highly recommended to predict H9N2 status + 0 and H9N2 status + 1 for the direct or auxiliary monitoring of its occurrence and development. Such a framework could provide new insights into predicting H9N2 outbreaks, and other practical potential applications to assist in disease monitor were also considerable.

Hierarchical deployment of Tbx3 dictates the identity of hypothalamic KNDy neurons to control puberty onset.

The neuroendocrine system consists of a heterogeneous collection of neuropeptidergic neurons in the brain, among which hypothalamic KNDy neurons represent an indispensable cell subtype controlling puberty onset. Although neural progenitors and neuronal precursors along the cell lineage hierarchy adopt a cascade diversification strategy to generate hypothalamic neuronal heterogeneity, the cellular logic operating within the lineage to specify a subtype of neuroendocrine neurons remains unclear. As human genetic studies have recently established a link between TBX3 mutations and delayed puberty onset, we systematically studied Tbx3-derived neuronal lineage and Tbx3-dependent neuronal specification and found that Tbx3 hierarchically established and maintained the identity of KNDy neurons for triggering puberty. Apart from the well-established lineage-dependent fate determination, we uncovered rules of interlineage interaction and intralineage retention operating through neuronal differentiation in the absence of Tbx3. Moreover, we revealed that human TBX3 mutations disturbed the phase separation of encoded proteins and impaired transcriptional regulation of key neuropeptides, providing a pathological mechanism underlying TBX3-associated puberty disorders.

Pig Weight and Body Size Estimation Using a Multiple Output Regression Convolutional Neural Network: A Fast and Fully Automatic Method.

Pig weight and body size are important indicators for producers. Due to the increasing scale of pig farms, it is increasingly difficult for farmers to quickly and automatically obtain pig weight and body size. Due to this problem, we focused on a multiple output regression convolutional neural network (CNN) to estimate pig weight and body size. DenseNet201, ResNet152 V2, Xception and MobileNet V2 were modified into multiple output regression CNNs and trained on modeling data. By comparing the estimated performance of each model on test data, modified Xception was selected as the optimal estimation model. Based on pig height, body shape, and contour, the mean absolute error (MAE) of the model to estimate body weight (BW), shoulder width (SW), shoulder height (SH), hip width (HW), hip width (HH), and body length (BL) were 1.16 kg, 0.33 cm, 1.23 cm, 0.38 cm, 0.66 cm, and 0.75 cm, respectively. The coefficient of determination (R2) value between the estimated and measured results was in the range of 0.9879-0.9973. Combined with the LabVIEW software development platform, this method can estimate pig weight and body size accurately, quickly, and automatically. This work contributes to the automatic management of pig farms.

Modeling of Heat Stress in Sows Part 2: Comparison of Various Thermal Comfort Indices.

Heat stress has an adverse effect on the production performance of sows, and causes a large economic loss every year. The thermal environment index is an important indicator for evaluating the level of heat stress in animals. Many thermal indices have been used to analyze the environment of the pig house, including temperature and humidity index (THI), effective temperature (ET), equivalent temperature index of sows (ETIS), and enthalpy (H), among others. Different heat indices have different characteristics, and it is necessary to analyze and compare the characteristics of heat indices to select a relatively suitable heat index for specific application. This article reviews the thermal environment indices used in the process of sow breeding, and compares various heat indices in four ways: (1) Holding the value of the thermal index constant and analyzing the equivalent temperature changes caused by the relative humidity. (2) Analyzing the variations of ET and ETIS caused by changes in air velocity. (3) Conducting a comparative analysis of a variety of isothermal lines fitted to the psychrometric chart. (4) Analyzing the distributions of various heat index values inside the sow barn and the correlation between various heat indices and sow heat dissipation with the use of computational fluid dynamics (CFD) technology. The results show that the ETIS performs better than other thermal indices in the analysis of sows' thermal environment, followed by THI2, THI4, and THI7. Different pigs have different heat transfer characteristics and different adaptability to the environment. Therefore, based on the above results, the following suggestions have been given: The thermal index thresholds need to be divided based on the adaptability of pigs to the environment at different growth stages and the different climates in different regions. An appropriate threshold for a thermal index can provide a theoretical basis for the environmental control of the pig house.

Modeling of Heat Stress in Sows-Part 1: Establishment of the Prediction Model for the Equivalent Temperature Index of the Sows.

Heat stress affects the estrus time and conception rate of sows. Compared with other life stages of pigs, sows are more susceptible to heat stress because of their increased heat production. Various indicators can be found in the literature assessing the level of heat stress in pigs. However, none of them is specific to assess the sows' thermal condition. Moreover, thermal indices are mainly developed by considering partial environment parameters, and there is no interaction between the index and the animal's physiological response. Therefore, this study aims to develop a thermal index specified for sows, called equivalent temperature index for sows (ETIS), which includes parameters of air temperature, relative humidity and air velocity. Based on the heat transfer characteristics of sows, multiple regression analysis is used to combine air temperature, relative humidity and air velocity. Environmental data are used as independent variables, and physiological parameters are used as dependent variables. In 1029 sets of data, 70% of the data is used as the training set, and 30% of the data is used as the test set to create and develop a new thermal index. According to the correlation equation between ETIS and temperature-humidity index (THI), combined with the threshold of THI, ETIS was divided into thresholds. The results show that the ETIS heat stress threshold is classified as follows: suitable temperature ETIS < 33.1 °C, mild temperature 33.1 °C ≤ ETIS < 34.5 °C, moderate stress temperature 34.5 °C ≤ ETIS < 35.9 °C, and severe temperature ETIS ≥ 35.9 °C. The ETIS model can predict the sows' physiological response in a good manner. The correlation coefficients R of skin temperature was 0.82. Compared to early developed thermal indices, ETIS has the best predictive effect on skin temperature. This index could be a useful tool for assessing the thermal environment to ensure thermal comfort for sows.