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1.
Curr Protoc ; 4(5): e1035, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38727641

RESUMEN

Nematodes are naturally infected by the fungal-related pathogen microsporidia. These ubiquitous eukaryotic parasites are poorly understood, despite infecting most types of animals. Identifying novel species of microsporidia and studying them in an animal model can expedite our understanding of their infection biology and evolution. Nematodes present an excellent avenue for pursuing such work, as they are abundant in the environment and many species are easily culturable in the laboratory. The protocols presented here describe how to isolate bacterivorous nematodes from rotting substrates, screen them for microsporidia infection, and molecularly identify the nematode and microsporidia species. Additionally, we detail how to remove environmental contaminants and generate a spore preparation of microsporidia from infected samples. We also discuss potential pitfalls and provide suggestions on how to mitigate them. These protocols allow for the identification of novel microsporidia species, which can serve as an excellent starting point for genomic analysis, determination of host specificity, and infection characterization. © 2024 The Authors. Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Gathering samples Support Protocol 1: Generating 10× and 40× Escherichia coli OP50 and seeding NGM plates Basic Protocol 2: Microsporidia screening, testing for Caenorhabditis elegans susceptibility, and sample freezing Basic Protocol 3: DNA extraction, PCR amplification, and sequencing to identify nematode and microsporidia species Basic Protocol 4: Removal of contaminating microbes and preparation of microsporidia spores Support Protocol 2: Bleach-synchronizing nematodes.


Asunto(s)
Microsporidios , Nematodos , Animales , Microsporidios/aislamiento & purificación , Microsporidios/genética , Microsporidios/clasificación , Microsporidios/patogenicidad , Nematodos/microbiología , Nematodos/genética , Caenorhabditis elegans/microbiología , ADN de Hongos/genética , Reacción en Cadena de la Polimerasa , Microsporidiosis/microbiología , Esporas Fúngicas/aislamiento & purificación
2.
Front Cell Infect Microbiol ; 14: 1367673, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38707512

RESUMEN

Most species of Dothiora are known from the dead parts of various host plants as saprobic fungi in terrestrial habitats occurring in tropical and temperate regions. In the present study, samples of Dothiora were collected from dead twigs and branches of Capparis spinosa, Rhaponticum repens, and an unknown angiosperm plant from the Tashkent and Jizzakh regions of Uzbekistan. Multi-gene phylogenetic analyses based on a combined ITS, LSU, SSU, TEF1, and TUB2 sequence data revealed their taxonomic positions within the Dothideaceae. Three new species of Dothiora, namely, Dothiora capparis, Dothiora rhapontici, and Dothiora uzbekistanica were proposed by molecular and morphological data. Likewise, the phylogenetic relationship and morphology of Dothiora are discussed. In addition, we provide a list of accepted Dothiora species, including host information, distribution, morphology descriptions, and availability of sequence data, to enhance the current knowledge of the diversity within Dothiora.


Asunto(s)
Ascomicetos , ADN de Hongos , Filogenia , Análisis de Secuencia de ADN , ADN de Hongos/genética , Ascomicetos/genética , Ascomicetos/clasificación , Ascomicetos/aislamiento & purificación , Uzbekistán , ADN Ribosómico/genética , Enfermedades de las Plantas/microbiología
3.
Artículo en Inglés | MEDLINE | ID: mdl-38713196

RESUMEN

The genus Exophiala is polymorphic, able to transition between yeast, hyphal and pseudohyphal forms. Species of the genus Exophiala are ubiquitous fungi that are distributed in various environments around the world. During a survey of fungal diversity in the gut of amphipods (Floresorchestia amphawaensis and undescribed Dogielinotid amphipods) from the Amphawa estuary, Samut Songkhram province, Thailand, five black yeast strains (DMKU-MG01, DMKU-MG07, DMKU-MG08, DMKU-HG10 and DMKU-FG04) were identified as representing a novel taxon on the basis of a combination of morphological and molecular phylogenetic features. The five strains did not produce filamentous hyphae or pseudohyphae. Only budding yeast cells were observed. On the basis of the phenotypic characteristics and the results of molecular analyses of the D1/D2 region of the large subunit (LSU) rRNA gene and the internal transcribed spacer (ITS) region, the five strains were identified as representing a novel species via applied nucleotide pairwise analysis. They differed from the most closely related species Exophiala alcalophiala by 3.54 % nucleotide substitutions (20 nucleotide substitutions in 572 bp) in the D1/D2 domains of the LSU rRNA gene. Moreover, the sequences of the ITS region of the five strains differed from those of the most closely related species E. alcalophiala, by 7.44-9.62 % nucleotide substitutions, and Exophiala halophiala, by 7.2-7.53 % nucleotide substitutions. The results of phylogenetic analyses based on the concatenated sequences of the ITS regions and the D1/D2 domains of the LSU rRNA gene confirmed that the five black yeast strains represented a single novel species of the genus Exophiala. In this study, Exophiala amphawaensis sp. nov. is proposed to accommodate these strains. The holotype is TBRC 15626T and the isotype is PYCC9020. The MycoBank accession number of the novel species is MB 851477.


Asunto(s)
Anfípodos , ADN de Hongos , ADN Espaciador Ribosómico , Exophiala , Filogenia , Análisis de Secuencia de ADN , Animales , Tailandia , Anfípodos/microbiología , ADN de Hongos/genética , ADN Espaciador Ribosómico/genética , Exophiala/genética , Exophiala/aislamiento & purificación , Exophiala/clasificación , Técnicas de Tipificación Micológica , Tracto Gastrointestinal/microbiología
4.
Artículo en Inglés | MEDLINE | ID: mdl-38713197

RESUMEN

Two isolates representing a novel species of the genus Wickerhamiella were obtained in India from nectar of flowers of Lantana camara, an ornamental exotic species native to Central and South America. Phylogenetic analyses of the D1/D2 domain of the 26S large subunit (LSU) rRNA gene, internal transcribed spacer (ITS) region, and physiological characteristics, supported the recognition of the novel species, that we designate Wickerhamiella lachancei sp. nov (MycoBank no. MB851709), with MCC 9929T as the holotype and PYCC 10003T as the isotype. Considering pairwise sequence similarity, the type strain of the novel species differs from the type strain of the most closely related species, Wickerhamiella drosophilae CBS 8459T, by 16 nucleotide substitutions and two gaps (3.9 % sequence variation) in the D1/D2 region (560 bp compared) and 28 nucleotide substitutions and five gaps (7.22 % sequence variation) in the ITS region (444 bp compared).


Asunto(s)
ADN de Hongos , ADN Espaciador Ribosómico , Flores , Lantana , Filogenia , Análisis de Secuencia de ADN , India , Flores/microbiología , ADN de Hongos/genética , Lantana/microbiología , ADN Espaciador Ribosómico/genética , Datos de Secuencia Molecular , Técnicas de Tipificación Micológica , ARN Ribosómico/genética , Saccharomycetales/genética , Saccharomycetales/aislamiento & purificación , Saccharomycetales/clasificación
5.
J Appl Microbiol ; 135(5)2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38724454

RESUMEN

AIMS: Neocosmospora species are saprobes, endophytes, and pathogens belonging to the family Nectriaceae. This study aims to investigate the taxonomy, biosynthetic potential, and application of three newly isolated Neocosmospora species from mangrove habitats in the southern part of Thailand using phylogeny, bioactivity screening, genome sequencing, and bioinformatics analysis. METHODS AND RESULTS: Detailed descriptions, illustrations, and a multi-locus phylogenetic tree with large subunit ribosomal DNA (LSU), internal transcribed spacer (ITS), translation elongation factor 1-alpha (ef1-α), and RNA polymerase II second largest subunit (RPB2) regions showing the placement of three fungal strains, MFLUCC 17-0253, MFLUCC 17-0257, and MFLUCC 17-0259 clustered within the Neocosmospora clade with strong statistical support. Fungal crude extracts of the new species N. mangrovei MFLUCC 17-0253 exhibited strong antifungal activity to control Colletotrichum truncatum CG-0064, while N. ferruginea MFLUCC 17-0259 exhibited only moderate antifungal activity toward C. acutatum CC-0036. Thus, N. mangrovei MFLUCC 17-0253 was sequenced by Oxford nanopore technology. The bioinformatics analysis revealed that 49.17 Mb genome of this fungus harbors 41 potential biosynthetic gene clusters. CONCLUSION: Two fungal isolates of Neocosmospora and a new species of N. mangrovei were reported in this study. These fungal strains showed activity against pathogenic fungi causing anthracnose in chili. In addition, full genome sequencing and bioinformatics analysis of N. mangrovei MFLUCC 17-0253 were obtained.


Asunto(s)
Colletotrichum , Filogenia , Colletotrichum/genética , Tailandia , Ascomicetos/genética , Antifúngicos/farmacología , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/prevención & control , Agentes de Control Biológico , ADN de Hongos/genética , Genoma Fúngico , Pueblos del Sudeste Asiático
7.
Mycopathologia ; 189(3): 43, 2024 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-38709328

RESUMEN

During an epidemiological survey, a potential novel species within the basidiomycetous yeast genus Trichosporon was observed. The clinical strain was obtained from a urine sample taken from a Brazilian kidney transplant recipient. The strain was molecularly identified using the intergenic spacer (IGS1) ribosomal DNA locus and a subsequent phylogenetic analysis showed that multiple strains that were previously reported by other studies shared an identical IGS1-genotype most closely related to that of Trichosporon inkin. However, none of these studies provided an in-depth characterization of the involved strains to describe it as a new taxon. Here, we present the novel clinically relevant yeast for which we propose the name Trichosporon austroamericanum sp. nov. (holotype CBS H-24937). T. austroamericanum can be distinguished from other siblings in the genus Trichosporon using morphological, physiological, and phylogenetic characters.


Asunto(s)
ADN de Hongos , ADN Espaciador Ribosómico , Filogenia , Análisis de Secuencia de ADN , Receptores de Trasplantes , Trichosporon , Tricosporonosis , Trichosporon/clasificación , Trichosporon/genética , Trichosporon/aislamiento & purificación , ADN Espaciador Ribosómico/genética , ADN Espaciador Ribosómico/química , ADN de Hongos/genética , Humanos , Brasil , Tricosporonosis/microbiología , Análisis por Conglomerados , Técnicas de Tipificación Micológica , Trasplante de Riñón , Microscopía , Genotipo
8.
Sci Rep ; 14(1): 10601, 2024 05 08.
Artículo en Inglés | MEDLINE | ID: mdl-38719921

RESUMEN

A plant parasite associated with the white haze disease in apples, the Basidiomycota Gjaerumia minor, has been found in most samples of the global bathypelagic ocean. An analysis of environmental 18S rDNA sequences on 12 vertical profiles of the Malaspina 2010 expedition shows that the relative abundance of this cultured species increases with depth while its distribution is remarkably different between the deep waters of the Pacific and Atlantic oceans, being present in higher concentrations in the former. This is evident from sequence analysis and a microscopic survey with a species-specific newly designed TSA-FISH probe. Several hints point to the hypothesis that G. minor is transported to the deep ocean attached to particles, and the absence of G. minor in bathypelagic Atlantic waters could then be explained by the absence of this organism in surface waters of the equatorial Atlantic. The good correlation of G. minor biomass with Apparent Oxygen Utilization, recalcitrant carbon and free-living prokaryotic biomass in South Pacific waters, together with the identification of the observed cells as yeasts and not as resting spores (teliospores), point to the possibility that once arrived at deep layers this species keeps on growing and thriving.


Asunto(s)
Basidiomycota , Océano Pacífico , Basidiomycota/genética , Basidiomycota/aislamiento & purificación , Basidiomycota/clasificación , ARN Ribosómico 18S/genética , Agua de Mar/microbiología , Filogenia , Océano Atlántico , ADN Ribosómico/genética , ADN de Hongos/genética
9.
Emerg Infect Dis ; 30(6): 1232-1235, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38782016

RESUMEN

A 3-year-old patient in India experiencing headaches and seizures was diagnosed with a fungal infection, initially misidentified as Cladophialophora bantiana. Follow-up sequencing identified the isolate to be Fonsecaea monophora fungus. This case demonstrates the use of molecular methods for the correct identification of F. monophora, an agent of fungal brain abscess.


Asunto(s)
Ascomicetos , Absceso Encefálico , Absceso Encefálico/microbiología , Absceso Encefálico/diagnóstico , Absceso Encefálico/tratamiento farmacológico , Humanos , Ascomicetos/aislamiento & purificación , Ascomicetos/genética , Ascomicetos/clasificación , Preescolar , Masculino , Micosis/microbiología , Micosis/diagnóstico , Antifúngicos/uso terapéutico , Antifúngicos/farmacología , Filogenia , ADN de Hongos/genética
10.
Parasite ; 31: 27, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38787023

RESUMEN

Enterocytozoon bieneusi is the most common microsporidian species in humans and can affect over 200 animal species. Considering possible increasing risk of human E. bieneusi infection due to close contact with pet dogs and identification of zoonotic E. bieneusi genotypes, 589 fresh fecal specimens of pet dogs were collected from Yunnan Province, China to determine the occurrence of E. bieneusi, characterize dog-derived E. bieneusi isolates, and assess their zoonotic potential at the genotype level. Enterocytozoon bieneusi was identified and genotyped by PCR and sequencing of the internal transcribed spacer (ITS) region of the ribosomal RNA (rRNA) gene. Twenty-nine specimens (4.9%) were positive. A statistical difference was observed in occurrence rates of E. bieneusi in pet dogs among 11 sampling sites by Fisher's exact test. Fifteen genotypes were identified and all of them phylogenetically belonged to zoonotic group 1, including four known genotypes (EbpC, D, Peru 8, and Henan-III) and 11 novel genotypes. Genotype Henan-III was reported in dogs for the first time. The finding of known genotypes found previously in humans and novel genotypes falling into zoonotic group 1 indicates that dogs may play a role in the transmission of E. bieneusi to humans in the investigated areas.


Title: Occurrence et caractérisation génétique d'Enterocytozoon bieneusi chez les chiens de compagnie dans la province du Yunnan, Chine. Abstract: Enterocytozoon bieneusi est l'espèce de microsporidies la plus répandue chez l'homme et peut affecter plus de 200 espèces animales. Compte tenu du risque accru possible d'infection humaine à E. bieneusi en raison d'un contact étroit avec des chiens de compagnie et de l'identification de génotypes zoonotiques d'E. bieneusi, 589 échantillons fécaux frais de chiens de compagnie ont été collectés dans la province du Yunnan, en Chine, pour déterminer la présence d'E. bieneusi, caractériser les isolats obtenus de chiens, et évaluer leur potentiel zoonotique au niveau du génotype. Enterocytozoon bieneusi a été identifié et génotypé par PCR et séquençage de la région d'espacement transcrit interne (ITS) du gène de l'ARN ribosomal (ARNr). Vingt-neuf échantillons (4,9%) étaient positifs. Une différence statistique a été observée dans les taux de présence d'E. bieneusi chez les chiens de compagnie parmi 11 sites d'échantillonnage par le test exact de Fisher. Quinze génotypes ont été identifiés et tous appartenaient phylogénétiquement au groupe zoonotique 1, dont quatre génotypes connus (EbpC, D, Peru 8 et Henan-III) et 11 nouveaux génotypes. Le génotype Henan-III est signalé pour la première fois chez le chien. La découverte de génotypes connus précédemment trouvés chez l'homme et de nouveaux génotypes appartenant au groupe zoonotique 1 indique que les chiens peuvent jouer un rôle dans la transmission d'E. bieneusi aux humains dans les zones étudiées.


Asunto(s)
Enfermedades de los Perros , Enterocytozoon , Heces , Genotipo , Microsporidiosis , Filogenia , Zoonosis , Perros , Animales , Enterocytozoon/genética , Enterocytozoon/aislamiento & purificación , Enterocytozoon/clasificación , China/epidemiología , Microsporidiosis/veterinaria , Microsporidiosis/epidemiología , Microsporidiosis/microbiología , Enfermedades de los Perros/epidemiología , Enfermedades de los Perros/microbiología , Enfermedades de los Perros/parasitología , Heces/microbiología , Heces/parasitología , Mascotas/microbiología , ADN Espaciador Ribosómico/genética , ADN de Hongos/genética , Humanos , Reacción en Cadena de la Polimerasa/veterinaria , Análisis de Secuencia de ADN
11.
Int J Med Mushrooms ; 26(5): 43-57, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38780422

RESUMEN

Wild resources of Auricularia cornea (A. polytricha) are abundant in China, and genetic diversity and genetic relationships analysis of A. cornea can provide basis for germplasm resource utilization and innovation and molecular marker-assisted breeding. In this study, 22 Auricularia strains collected were identified as A. cornea based on ITS sequence analysis, and its genetic diversity was examined by ISSR and SRAP markers. The results showed that a total of 415 bands were amplified by 11 selected ISSR primers, with an average amplification of 37.73 bands per primer, and the mean values of Ne, I, and H were 1.302, 0.368, and 0.219, respectively. A total of 450 bands were amplified by 10 SRAP primers, with an average of 45 bands per primer, and the average of Ne, I, and H were 1.263, 0.302, and 0.183, respectively. The unweighted pair-group method with arithmetic means analysis based on ISSR-SRAP marker data revealed that the genetic similarity coefficient between the tested strains was 0.73-0.97, and the strains could be divided into five groups at 0.742, which had a certain correlation with regional distribution. The results of PCOA and population structure analysis based on ISSR-SRAP data also produced similar results. These results demonstrate the genetic diversity and distinctness among wild A. cornea and provide a theoretical reference for the classification, breeding, germplasm innovation, utilization, and variety protection of A. cornea resources.


Asunto(s)
Basidiomycota , Variación Genética , China , Basidiomycota/genética , Basidiomycota/clasificación , Marcadores Genéticos , Filogenia , ADN de Hongos/genética , Repeticiones de Microsatélite , Análisis de Secuencia de ADN , ADN Espaciador Ribosómico/genética
12.
Artículo en Inglés | MEDLINE | ID: mdl-38780584

RESUMEN

Four yeast strains belonging to the basidiomycetous yeast genus Mrakia were isolated from diverse habitats in the Ny-Ålesund region (Svalbard, High Arctic): two from vascular plants, one from seawater and one from freshwater. Phylogenetic analysis, based on the ITS region and the D1/D2 domain of the 28S rRNA gene, identified these four strains as representing two novel species within the genus Mrakia. The names Mrakia polaris sp. nov. (MycoBank number: MB 852063) and Mrakia amundsenii sp. nov. (MycoBank number: MB 852064) are proposed. These two new species show distinct psychrophilic adaptations, as they exhibit optimal growth at temperatures between 10 and 15°C, while being unable to grow at 25°C. The holotype of M. polaris sp. nov. is CPCC 300345T, and the holotype of M. amundsenii sp. nov. is CPCC 300572T.


Asunto(s)
ADN de Hongos , Filogenia , Agua de Mar , Análisis de Secuencia de ADN , Regiones Árticas , ADN de Hongos/genética , Agua de Mar/microbiología , Técnicas de Tipificación Micológica , Svalbard , ARN Ribosómico 28S/genética , Basidiomycota/genética , Basidiomycota/clasificación , Basidiomycota/aislamiento & purificación , Agua Dulce/microbiología , Ecosistema , Frío , Saccharomycetales/clasificación , Saccharomycetales/genética , Saccharomycetales/aislamiento & purificación
13.
Mycopathologia ; 189(3): 44, 2024 May 11.
Artículo en Inglés | MEDLINE | ID: mdl-38734862

RESUMEN

A 50-year-old man, previously diagnosed with pulmonary tuberculosis and lung cavities, presented with symptoms including fever, shortness of breath, and cough. A pulmonary CT scan revealed multiple cavities, consolidation and tree-in-bud in the upper lungs. Further investigation through direct examination of bronchoalveolar lavage fluid showed septate hyphae with dichotomous acute branching. Subsequent isolation and morphological analysis identified the fungus as belonging to Aspergillus section Nigri. The patient was diagnosed with probable invasive pulmonary aspergillosis and successfully treated with a three-month oral voriconazole therapy. Phylogenetic analysis based on partial ß-tubulin, calmodulin and RNA polymerase second largest subunit sequences revealed that the isolate represents a putative new species related to Aspergillus brasiliensis, and is named Aspergillus hubkae here. Antifungal susceptibility testing demonstrated that the isolate is resistant to itraconazole but susceptible to voriconazole. This phenotypic and genetic characterization of A. hubkae, along with the associated case report, will serve as a valuable resource for future diagnoses of infections caused by this species. It will also contribute to more precise and effective patient management strategies in similar clinical scenarios.


Asunto(s)
Antifúngicos , Aspergillus , Aspergilosis Pulmonar Invasiva , Pruebas de Sensibilidad Microbiana , Filogenia , Análisis de Secuencia de ADN , Voriconazol , Humanos , Masculino , Persona de Mediana Edad , Antifúngicos/uso terapéutico , Antifúngicos/farmacología , Aspergillus/aislamiento & purificación , Aspergillus/genética , Aspergillus/clasificación , Aspergillus/efectos de los fármacos , Líquido del Lavado Bronquioalveolar/microbiología , Análisis por Conglomerados , ADN de Hongos/genética , ADN de Hongos/química , Aspergilosis Pulmonar Invasiva/microbiología , Aspergilosis Pulmonar Invasiva/tratamiento farmacológico , Aspergilosis Pulmonar Invasiva/diagnóstico , Itraconazol/farmacología , Microscopía , Tomografía Computarizada por Rayos X , Resultado del Tratamiento , Tubulina (Proteína)/genética , Voriconazol/uso terapéutico , Voriconazol/farmacología
14.
Artículo en Inglés | MEDLINE | ID: mdl-38747851

RESUMEN

Microsporum canis, one of the most widespread dermatophytes worldwide, is a zoonotic microorganism that transmits infection from reservoirs such as cats and dogs to humans. This microorganism is associated with Tinea corporis and other clinical manifestations; however, few studies have used genetic surveillance to determine and characterize the process of zoonotic transmission. In this study, we show a clear example of zoonotic transmission from a cat to an intrafamilial environment, where it caused Tinea corporis by infection with M. canis. Molecular characterization using the b-tubulin gene and Random Amplified Polymorphic DNA analysis made it possible to determine that the six isolates of M. canis obtained in this study belonged to the same genetic variant or clone responsible for reservoir-reservoir or reservoir-human transmission.


Asunto(s)
Enfermedades de los Gatos , Microsporum , Tiña , Zoonosis , Microsporum/aislamiento & purificación , Microsporum/genética , Microsporum/clasificación , Gatos/microbiología , Animales , Tiña/microbiología , Tiña/transmisión , Tiña/veterinaria , Enfermedades de los Gatos/microbiología , Enfermedades de los Gatos/transmisión , Zoonosis/microbiología , Zoonosis/transmisión , Mascotas/microbiología , Humanos , Perros , Técnica del ADN Polimorfo Amplificado Aleatorio , Masculino , Femenino , Enfermedades de los Perros/microbiología , Enfermedades de los Perros/transmisión , ADN de Hongos/genética
15.
Antonie Van Leeuwenhoek ; 117(1): 77, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38717550

RESUMEN

The "Shadegan International Wetland" (SIW) is one of the wetlands internationally recognized in the Ramsar convention. The vegetation of this wetland ecosystem consists of mostly grasses and shrubs that host a large number of fungi including endophytes. In this study, Nigrospora isolates were obtained from healthy plants of this wetland and its surrounding salt marshes and identified based on morphological features and multilocus phylogenetic analyses based on three DNA loci, namely the internal transcribed spacer regions 1 and 2 including the intervening 5.8S nuclear ribosomal DNA (ITS), ß-tubulin (tub2), and elongation factor 1-α (tef1-α). Accordingly, the following Nigrospora species were identified: N. lacticolonia, N. oryzae, N. osmanthi, N. pernambucoensis and a novel taxon N. shadeganensis sp. nov., which is described and illustrated. To the best of our knowledge, 10 new hosts for Nigrospora species are here reported, namely Aeluropus lagopoides, Allenrolfea occidentalis, Anthoxanthum monticola, Arthrocnemum macrostachyum, Cressa cretica, Halocnemum strobilaceum, Seidlitzia rosmarinus, Suaeda vermiculata, Tamarix passerinoides, and Typha latifolia. Moreover, the species N. lacticolonia and N. pernambucoensis are new records for the mycobiota of Iran.


Asunto(s)
Ascomicetos , Endófitos , Filogenia , Poaceae , Humedales , Irán , Endófitos/clasificación , Endófitos/genética , Endófitos/aislamiento & purificación , Poaceae/microbiología , Ascomicetos/genética , Ascomicetos/clasificación , Ascomicetos/aislamiento & purificación , ADN de Hongos/genética , ADN Espaciador Ribosómico/genética , Tubulina (Proteína)/genética
16.
World J Microbiol Biotechnol ; 40(6): 180, 2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38668960

RESUMEN

DNA adduction in the model yeast Saccharomyces cerevisiae was investigated after exposure to the fungicide penconazole and the reference genotoxic compound benzo(a)pyrene, for validating yeasts as a tool for molecular toxicity studies, particularly of environmental pollution. The effect of the toxicants on the yeast's growth kinetics was determined as an indicator of cytotoxicity. Fermentative cultures of S. cerevisiae were exposed to 2 ppm of Penconazole during different phases of growth; while 0.2 and 2 ppm of benzo(a)pyrene were applied to the culture medium before inoculation and on exponential cultures. Exponential respiratory cultures were also exposed to 0.2 ppm of B(a)P for comparison of both metabolisms. Penconazole induced DNA adducts formation in the exponential phase test; DNA adducts showed a peak of 54.93 adducts/109 nucleotides. Benzo(a)pyrene induced the formation of DNA adducts in all the tests carried out; the highest amount of 46.7 adducts/109 nucleotides was obtained in the fermentative cultures after the exponential phase exposure to 0.2 ppm; whereas in the respiratory cultures, 14.6 adducts/109 nucleotides were detected. No cytotoxicity was obtained in any experiment. Our study showed that yeast could be used to analyse DNA adducts as biomarkers of exposure to environmental toxicants.


Asunto(s)
Benzo(a)pireno , Aductos de ADN , Contaminantes Ambientales , Saccharomyces cerevisiae , Aductos de ADN/metabolismo , Saccharomyces cerevisiae/efectos de los fármacos , Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crecimiento & desarrollo , Benzo(a)pireno/toxicidad , Benzo(a)pireno/metabolismo , Contaminantes Ambientales/toxicidad , Contaminantes Ambientales/metabolismo , Mutágenos/toxicidad , Mutágenos/metabolismo , ADN de Hongos/genética , Fungicidas Industriales/toxicidad , Fungicidas Industriales/metabolismo
17.
World J Microbiol Biotechnol ; 40(6): 185, 2024 Apr 29.
Artículo en Inglés | MEDLINE | ID: mdl-38683236

RESUMEN

Stalk rot disease is a major constraint in maize production and till date reported to be caused by two to three species of phytopathogenic fungi but, in our present study, we disclose the first report of stalk rot is caused by complex species of phytopathogens, which belongs to five different genera. Therefore, to substantiate these findings, a total of 105 diseased samples of maize were collected from 21 different locations in six different geographical locations of India from which 48 isolates were used for the research study. Morphological features such as pigmentation, colony color, type of mycelium and pattern of mycelium was examined using macro and microscopic methods. A total of 11 different spp. of pathogens belonging to the five different genera: Fusarium verticillioides (56.25%), F. equiseti (14.5%), F. andiyazi (6.25%), F. solani (2.08%), F. proliferatum (2.08%), F. incarnatum (2.08%), Lasidioplodia theobrame (6.25%), Exserohilum rostrtum (4.16%), Nigrospora spp. (4.16%). and Schizophyllum commune (2.08%) were identified by different housekeeping genes (ITS, TEF-1α, RPB2 and Actin). Fusarium verticillioides, F. equiseti and F. andiyazi were major pathogens involved in stalk rot. This is the first report on F. proliferatum, F. solani, F. incarnatum, Lasidioplodia theobrame, Exserohilum rostrtum, Nigrospora spp. and Schizophyllum commune causing stalk rot of maize and their distribution in the different states of India. Studies on population dynamics of PFSR will enhance the understanding of pathogen behavior, virulence, or its association with different pathogens across India, which will facilitate the development of resistant maize genotypes against the PFSR.


Asunto(s)
Fusarium , Filogenia , Enfermedades de las Plantas , Zea mays , Zea mays/microbiología , Enfermedades de las Plantas/microbiología , India , Fusarium/genética , Fusarium/clasificación , Fusarium/aislamiento & purificación , Fusarium/patogenicidad , ADN de Hongos/genética , Hongos/genética , Hongos/clasificación , Hongos/aislamiento & purificación , Hongos/patogenicidad , Variación Genética
18.
Mikrochim Acta ; 191(5): 287, 2024 04 26.
Artículo en Inglés | MEDLINE | ID: mdl-38671236

RESUMEN

To overcome the limitations of current methods for diagnosing paracoccidioidomycosis (PCM), it is critical to develop novel diagnostic strategies that can be implemented in low-resource settings and dramatically improve turnaround times. This study focused on the development of a portable molecular test to screen for Paracoccidioides spp. The proposed approach integrated double-tagging polymerase chain reaction (PCR) and a paper-based lateral flow assay (LFA) for readout, using carbon nanoparticles as a signal generation system. Primers tagged with biotin and digoxigenin were employed to conduct the double-tagging PCR, which can be conveniently carried out on portable thermocyclers. This method can generate billions of tagged DNA copies from a single target molecule, which can be rapidly detected by the LFA platform, providing results within minutes. Avidin-modified carbon nanoparticles served as a signal generation system, enabling detection in the immunochromatographic assay. The LFA demonstrated the capability to detect double-tagged amplicons as low as 0.21 ng or 0.10 ng, depending on whether the results were assessed visually or with a smartphone equipped with an image processor. These findings suggest that the proposed approach holds great promise as a point-of-care diagnostic tool for the early and accurate detection of PCM in low-resource settings. The diagnostic test is rapid and inexpensive, requires minimal handling and can be easily introduced into the general practitioner's armoury for ambulatory screening of infection. This innovative approach has the potential to make a substantial contribution to PCM diagnosis, ultimately reducing morbidity and mortality associated with this disease.


Asunto(s)
Carbono , ADN de Hongos , Nanopartículas , Paracoccidioides , Paracoccidioides/genética , Paracoccidioides/aislamiento & purificación , Carbono/química , Nanopartículas/química , ADN de Hongos/genética , ADN de Hongos/análisis , Paracoccidioidomicosis/diagnóstico , Paracoccidioidomicosis/microbiología , Humanos , Reacción en Cadena de la Polimerasa/métodos , Límite de Detección
19.
J Clin Microbiol ; 62(5): e0039424, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38602412

RESUMEN

Aspergillus species and Mucorales agents are the primary etiologies of invasive fungal disease (IFD). Biomarkers that predict outcomes are needed to improve care. Patients diagnosed with invasive aspergillosis and mucormycosis using plasma cell-free DNA (cfDNA) PCR were retested weekly for 4 weeks. The primary outcome included all-cause mortality at 6 weeks and 6 months based on baseline cycle threshold (CT) values and results of follow-up cfDNA PCR testing. Forty-five patients with Aspergillus and 30 with invasive Mucorales infection were retested weekly for a total of 197 tests. Using the European Organization for Research and Treatment of Cancer and the Mycoses Study Group Education and Research Consortium (EORTC/MSG) criteria, 30.7% (23/75), 25.3% (19/75), and 38.7% (29/75) had proven, probable, and possible IFD, respectively. In addition, 97.3% (73/75) were immunocompromised. Baseline CT increased significantly starting at week 1 for Mucorales and week 2 for Aspergillus. Aspergillosis and mucormycosis patients with higher baseline CT (CT >40 and >35, respectively) had a nonsignificantly higher survival rate at 6 weeks, compared with patients with lower baseline CT. Mucormycosis patients with higher baseline CT had a significantly higher survival rate at 6 months. Mucormycosis, but not aspergillosis patients, with repeat positive cfDNA PCR results had a nonsignificantly lower survival rate at 6 weeks and 6 months compared with patients who reverted to negative. Aspergillosis patients with baseline serum Aspergillus galactomannan index <0.5 and <1.0 had significantly higher survival rates at 6 weeks when compared with those with index ≥0.5 and ≥1.0, respectively. Baseline plasma cfDNA PCR CT can potentially be used to prognosticate survival in patients with invasive Aspergillus and Mucorales infections. IMPORTANCE: We show that Aspergillus and Mucorales plasma cell-free DNA PCR can be used not only to noninvasively diagnose patients with invasive fungal disease but also to correlate the baseline cycle threshold with survival outcomes, thus potentially allowing the identification of patients at risk for poor outcomes, who may benefit from more targeted therapies.


Asunto(s)
Ácidos Nucleicos Libres de Células , ADN de Hongos , Infecciones Fúngicas Invasoras , Mucormicosis , Reacción en Cadena de la Polimerasa , Humanos , Mucormicosis/diagnóstico , Mucormicosis/mortalidad , Mucormicosis/sangre , Mucormicosis/microbiología , Masculino , Femenino , Persona de Mediana Edad , Pronóstico , Anciano , Ácidos Nucleicos Libres de Células/sangre , Reacción en Cadena de la Polimerasa/métodos , Adulto , ADN de Hongos/genética , ADN de Hongos/sangre , Infecciones Fúngicas Invasoras/diagnóstico , Infecciones Fúngicas Invasoras/mortalidad , Infecciones Fúngicas Invasoras/microbiología , Aspergillus/genética , Aspergillus/aislamiento & purificación , Aspergilosis/diagnóstico , Aspergilosis/mortalidad , Aspergilosis/microbiología , Mucorales/genética , Mucorales/aislamiento & purificación , Biomarcadores/sangre , Anciano de 80 o más Años , Estudios Prospectivos
20.
Artículo en Inglés | MEDLINE | ID: mdl-38591772

RESUMEN

Two yeast strains, designated as 19-39-3 and 19-40-2, obtained from the fruiting bodies of Trametes versicolor and Marasmius siccus collected in Yunwu Mountain Forest Park, PR China, have been identified as representing a novel asexual ascomycetous yeast species. From the results of phylogenetic analyses of the sequences of the D1/D2 domains of the large subunit (LSU) rRNA, small subunit (SSU) rRNA and translation elongation factor 1-α (TEF1) genes, it was determined that these strains represent a member of the genus Wickerhamomyces, with Wickerhamomyces alni and Candida ulmi as the closest relatives. The novel species exhibited 6.6 and 6.7% differences in the D1/D2 domains compared with W. alni and C. ulmi, respectively. Additionally, distinct biochemical and physiological differences were observed between the novel species and its related counterparts. No sexual reproduction was observed in these strains, leading to the proposal of the name Wickerhamomyces corioli f.a., sp. nov. for this newly discovered species.


Asunto(s)
Agaricales , Saccharomycetales , Filogenia , ADN Espaciador Ribosómico/genética , Agaricales/genética , Trametes/genética , Análisis de Secuencia de ADN , Composición de Base , ARN Ribosómico 16S/genética , ADN Bacteriano/genética , Técnicas de Tipificación Bacteriana , Ácidos Grasos/química , Saccharomycetales/genética , ADN de Hongos/genética , Técnicas de Tipificación Micológica
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