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1.
Adv Exp Med Biol ; 1454: 47-72, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39008263

RESUMEN

The platyhelminth class Trematoda comprises two subclasses with largely disparate species diversity, with the small Aspidogastrea with c.80 species and the speciose Digenea with c.18,000 species, which has attracted much effort towards our understanding of evolutionary relationships among suprageneric taxa. This chapter focuses on insights into the classification of the Digenea, that have become apparent from our advanced understanding of both morphological and molecular data. The field of molecular systematics of the Digenea has experienced significant advances over the past 15 years. Phylogenetic analyses of sequence data predominantly from the 18S and 28S rRNA genes have incorporated a considerable diversity of taxa, thus increasing the accuracy of phylogenetic inferences at higher taxonomic levels. As a result, the status of long-standing supraspecific taxa has been revised, new higher-level taxa have been defined, and inferences made in association with morphological and life-cycle evidence. A substantial effort has been made towards a classification reflecting a natural system of the Digenea by considering morphological evidence in conjunction with phylogenies inferred from molecular data; this has resulted in considerable congruence. However, limited taxon sampling in the phylogeny of the Digenea still remains relevant, especially in relation to some higher-level taxa, and an outline of these omissions is presented. A framework that has led to robust estimates of phylogeny is outlined, and the application of advanced morphological and molecular approaches in digenean taxonomy and systematics is illustrated using the most comprehensively studied digenean superfamilies.


Asunto(s)
Filogenia , Trematodos , Animales , Trematodos/genética , Trematodos/clasificación , ARN Ribosómico 28S/genética , ARN Ribosómico 18S/genética
2.
J Parasitol ; 110(4): 276-294, 2024 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-38982635

RESUMEN

Herein, we provide a supplemental description of Caballerotrema annulatum (Diesing, 1850) Ostrowski de Núñez and Sattmann, 2002 (Digenea: Caballerotrematidae Tkach, Kudlai, and Kostadinova, 2016) based on specimens collected from the intestine of an electric eel, Electrophorus cf. varii (Gymnotiformes: Gymnotidae) captured in the Amazon River (Colombia). This caballerotrematid can be differentiated from its congeners by the following combination of morphological features: body surface spines forming contiguous transverse rows, concentric (wrapping dorso-ventrally around body), distributing into posterior body half (vs. restricted to anterior body half in Caballerotrema brasiliensePrudhoe, 1960; indeterminate for Caballerotrema aruanenseThatcher, 1980 and Caballerotrema piscicola [Stunkard, 1960] Kostadinova and Gibson, 2001); head collar lacking projections (vs. having them in C. brasiliense, C. aruanense, and C. piscicola), narrow (head collar more narrow than maximum body width vs. the head collar being obviously wider than the body in C. brasiliense, C. aruanense, and C. piscicola); corner spines clustered (vs. corner spines distributing as 2 separated pairs in C. brasiliense, C. aruanense, and C. piscicola); pharynx approximately at level of the corner spines (vs. pharynx far anterior to corner spines in C. brasiliense, C. aruanense, and C. piscicola); and testes ovoid and nonoverlapping (C. aruanense; vs. sinuous and overlapping in C. brasiliense and C. piscicola). Based on our results, we revise the diagnosis of CaballerotremaPrudhoe, 1960 to include features associated with the shape and distribution of body surface spines, orientation and position of head collar spines, cirrus sac, seminal vesicle, oviduct, Laurer's canal, oötype, vitellarium, and transverse vitelline ducts. We performed Bayesian inference analyses using the partial large subunit ribosomal (28S) DNA gene. Our 28S sequence of C. annulatum was recovered sister to that of Caballerotrema sp. (which is the only other caballerotrematid sequence available in GenBank) from an arapaima, Arapaima gigas (Schinz, 1822) (Osteoglossiformes: Arapaimidae) in the Peruvian Amazon. Our sequence of C. annulatum comprises the only caballerotrematid sequenced tethered to a morphological description and a voucher specimen in a lending museum. The present study is a new host record and new locality record for C. annulatum. The phylogeny comprises the most resolved and taxon-rich evolutionary hypothesis for Echinostomatoidea published to date.


Asunto(s)
Enfermedades de los Peces , Filogenia , Ríos , Trematodos , Infecciones por Trematodos , Animales , Trematodos/clasificación , Trematodos/anatomía & histología , Infecciones por Trematodos/parasitología , Infecciones por Trematodos/veterinaria , Infecciones por Trematodos/epidemiología , Enfermedades de los Peces/parasitología , Colombia , Gymnotiformes/parasitología , ADN de Helmintos/química , ARN Ribosómico 28S/genética , Intestinos/parasitología
3.
Folia Parasitol (Praha) ; 712024 Jun 06.
Artículo en Inglés | MEDLINE | ID: mdl-39022895

RESUMEN

The present study aims at clarifying the poorly known phylogenetic relationships and systematics of cestodes of the family Davaineidae Braun, 1900 (Cyclophyllidea), primarily the genus Raillietina Fuhrmann, 1920 and of the subfamily Inermicapsiferinae (Anoplocephalidae) from mammals (mostly rodents, 31 new isolates) and birds (eight new isolates). Phylogenetic analyses are based on sequences of the large subunit ribosomal RNA gene (28S) and mitochondrial NADH dehydrogenase subunit 1 gene (nad1). The main phylogenetic pattern emerging from the present analysis is the presence of three independent lineages within the main clade of the subfamily Davaineinae, one of which is almost entirely confined to species from rodents and the other two show a mixture of species from birds and mammals. It is suggested that the major diversification of the main clade took place in birds, possibly in galliforms. The subsequent diversification included repeated host shifts from birds to mammals and to other birds, and from rodents to other mammals, showing that colonisation of new host lineages has been the main driver in the diversification of davaineine cestodes. It is also shown that all isolates of Inermicapsifer Janicki, 1910, mainly from rodents, form a monophyletic group positioned among Raillietina spp. in the "rodent lineage", indicating that the genus Inermicapsifer is a member of the family Davaineidae. This means that the subfamily Inermicapsiferinae and the family Inermicapsiferidae should be treated as synonyms of the Davaineidae, specifically the subfamily Davaineinae. Three additional genera generally included in the Inermicapsiferinae, i.e. Metacapsifer Spasskii, 1951, Pericapsifer Spasskii, 1951 and Thysanotaenia Beddard, 1911, are also assigned here to the Davaineidae (subfamily Davaineinae). Raillietina spp. were present in all three main lineages and appeared as multiple independent sublineages from bird and mammalian hosts, verifying the non-monophyly of the genus Raillietina and suggesting a presence of multiple new species and genera.


Asunto(s)
Cestodos , Infecciones por Cestodos , Filogenia , Roedores , Animales , Cestodos/clasificación , Cestodos/genética , Roedores/parasitología , Infecciones por Cestodos/veterinaria , Infecciones por Cestodos/parasitología , Aves , ARN Ribosómico 28S/genética , ARN Ribosómico 28S/análisis , NADH Deshidrogenasa/genética
4.
Syst Parasitol ; 101(4): 49, 2024 Jul 05.
Artículo en Inglés | MEDLINE | ID: mdl-38967719

RESUMEN

Taeniacanthus aulacocephali Izawa, 2021 (Copepoda: Cyclopoida: Taeniacanthidae) was redescribed from the branchial cavity and gill filaments of Uranoscopus japonicus Houttuyn (Perciformes: Uranoscopidae) collected from the Pacific coast of the Kochi and Wakayama prefectures, Japan. This is the second record of the copepod, and the finding from U. japonicus represents the new host record. The species is characterized by several distinguishing features: 1) a decrease in the width of the habitus between the second and fourth pedigerous segments; 2) the ratio of prosome/body length; 3) the presence of eight setae on the exopodal terminal segment of leg 2; 4) an un-bifurcated maxilliped claw surrounded by 14-28 transverse ridges; and 5) the presence of an inner coxal seta on legs 2 and 3. The newly collected specimens were subjected to a modified non-destructive DNA extraction method and morphological description based on the same copepod individual, while preserving a morphologically describable specimen. Sequences of 18S rDNA, 28S rDNA and the mitochondrial cytochrome c oxidase subunit 1 mitochondrial gene (cox1) were obtained.


Asunto(s)
Copépodos , Especificidad de la Especie , Animales , Copépodos/anatomía & histología , Copépodos/clasificación , Copépodos/genética , Japón , Océano Pacífico , Perciformes/parasitología , Filogenia , ARN Ribosómico 28S/genética , Complejo IV de Transporte de Electrones/genética
5.
Dis Aquat Organ ; 159: 9-14, 2024 Jul 11.
Artículo en Inglés | MEDLINE | ID: mdl-38989789

RESUMEN

Glypthelmins quieta is a frog trematode native to North and Central America. This trematode was recently detected in Japan in the American bullfrog Lithobates catesbeianus, which was introduced from North America to Japan. As the first intermediate host of G. quieta, typically a snail, has not yet been identified in Japan, we conducted a snail survey in eastern Japan to screen for an intermediate host using DNA barcoding based on the nuclear 28S ribosomal RNA and mitochondrial cytochrome c oxidase subunit 1. We sampled 3 different snail species, Orientogalba ollula, Physella acuta, and Sinotaia quadrata histrica (157 individuals in total), and only the freshwater snail Physella acuta, which is also believed to have been introduced from North America to Japan, had sporocysts of G. quieta in its hepatopancreas. The introduction of the intermediate and definitive hosts from North America may have facilitated the invasion of G. quieta into Japan.


Asunto(s)
Caracoles , Trematodos , Animales , Japón , Trematodos/genética , Caracoles/parasitología , Especies Introducidas , Interacciones Huésped-Parásitos , ARN Ribosómico 28S/genética
6.
Syst Parasitol ; 101(4): 51, 2024 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-39017770

RESUMEN

Troglocephalinae n. subfam. is proposed for Spinuris Doran, 1953, Neoheterocotyle Hargis, 1955, Anoplocotyloides Young, 1967, Troglocephalus rhinobatidis Young, 1967 (previously incertae sedis), Nonacotyle pristis Ogawa, 1991, Mehracotyle insolita Neifar, Euzet & Ben Hassine, 2002, Scuticotyle cairae n. gen. et sp., and Brancheocotyle imbricata n. gen. et sp. All members of the proposed new subfamily are gill parasites of shovelnose rays of the order Rhinopristiformes. The subfamilies Heterocotylinae Chisholm, Wheeler & Beverley-Burton, 1995, and Dasybatotreminae Bychowsky, 1957, are amended to exclude Spinuris, Nonacotyle, Neoheterocotyle, and Anoplocotyloides and Mehracotyle, respectively. Heterocotylinae includes gill parasites of members of the orders Myliobatiformes and Torpediniformes. Dasybatotreminae includes parasites of the gills and pharyngeal cavity of members of the orders Myliobatiformes and Rajiformes. A revised phylogeny of the Monocotylidae Taschenberg, 1879 is presented and discussed, based on 28S rDNA sequences, including new sequences for Myliocotyle pteromylaei Neifer, Euzet & Ben Hassine, 1999, Heterocotyle tokoloshei Vaughan & Chisholm, 2010, Neoheterocotyle robii Vaughan & Chisholm, 2010, and the two newly proposed species and genera. Additional locality records are also provided for Monocotylidae from off South Africa.


Asunto(s)
Branquias , Rajidae , Especificidad de la Especie , Trematodos , Animales , Branquias/parasitología , Trematodos/clasificación , Trematodos/genética , Trematodos/anatomía & histología , Rajidae/parasitología , Filogenia , ARN Ribosómico 28S/genética
7.
PLoS One ; 19(7): e0305600, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39018319

RESUMEN

Plants intimately coexist with diverse taxonomically structured microbial communities that influence host health and productivity. The coexistence of plant microbes in the phyllosphere benefits biodiversity maintenance, ecosystem function, and community stability. However, differences in community composition and network structures of phyllosphere epiphytic and endophytic fungi are widely unknown. Using Illumina Miseq sequencing of internal transcribed spacer (ITS) and 28S rRNA gene amplicons, we characterised the epiphytic and endophytic fungal communities associated with cashew phyllosphere (leaf, flower and fruit) from Kwale, Kilifi and Lamu counties in Kenya. The ITS and 28S rRNA gene sequences were clustered into 267 and 108 operational taxonomic units (OTUs) at 97% sequence similarity for both the epiphytes and endophytes. Phylum Ascomycota was abundant followed by Basidiomycota, while class Saccharomycetes was most dominant followed by Dothideomycetes. The major non-ascomycete fungi were associated only with class Tremellales. The fungal communities detected had notable ecological functions as saprotrophs and pathotrophs in class Saccharomyectes and Dothideomycetes. The community composition of epiphytic and endophytic fungi significantly differed between the phyllosphere organs which was statistically confirmed by the Analysis of Similarity test (ANOSIM Statistic R: 0.3273, for 28S rRNA gene and ANOSIM Statistic R: 0.3034 for ITS). The network analysis revealed that epiphytic and endophytic structures were more specialized, modular and had less connectance. Our results comprehensively describe the phyllosphere cashew-associated fungal community and serve as a foundation for understanding the host-specific microbial community structures among cashew trees.


Asunto(s)
Anacardium , Endófitos , Kenia , Anacardium/microbiología , Endófitos/genética , Endófitos/clasificación , Hongos/genética , Hongos/clasificación , Hongos/aislamiento & purificación , Código de Barras del ADN Taxonómico , ARN Ribosómico 28S/genética , Micobioma/genética , Biodiversidad , Filogenia , Hojas de la Planta/microbiología , ADN de Hongos/genética
8.
Mycologia ; 116(4): 601-620, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38847769

RESUMEN

Three novel species of the genus Leucocoprinus, named Lc. cinnamomeodiscus, Lc. dahranwalanus, and Lc. iqbalii, are described from unexplored regions of southern Punjab, Pakistan, based on comprehensive analyses of morphoanatomical characteristics and molecular phylogenetic data. We provide illustrations of freshly collected basidiomata and detailed line drawings highlighting key anatomical features. The molecular phylogenetic analyses, which are based on the internal transcribed spacer (ITS) region and combined ITS-28S sequences, consistently position these newly described species within the genus Leucocoprinus. Additionally, this study also introduces new taxonomic combinations for previously reported Leucoagaricus species.


Asunto(s)
ADN de Hongos , ADN Espaciador Ribosómico , Filogenia , Pakistán , ADN de Hongos/genética , ADN Espaciador Ribosómico/genética , Análisis de Secuencia de ADN , Esporas Fúngicas/citología , Basidiomycota/genética , Basidiomycota/clasificación , ARN Ribosómico 28S/genética , Biodiversidad
9.
Sci Rep ; 14(1): 13712, 2024 06 14.
Artículo en Inglés | MEDLINE | ID: mdl-38877177

RESUMEN

The family Acuariidae is a speciose group of parasitic nematodes, infecting mostly birds as definitive hosts. This study focused on the characterization of two species of acuariids, collected in two different species of piscivorous birds, the European great cormorant Phalacrocorax carbo sinensis from Italy, and the pygmy cormorant Microcarbo pygmaeus from Israel. Parasites were analyzed using light and scanning electron microscopy and by amplification and sequencing of the 28S rDNA. The results of morphological and molecular analyses showed that Ph. carbo sinensis was infected by the acuariid Syncuaria squamata (12 females) and Cosmocephalus obvelatus (1 female), whereas M. pygmaeus was infected by C. obvelatus (2 males, 12 females). The present results provide new data on the distribution of acuariid parasites of piscivorous birds, the first report of Acuariidae in Israel, and the first molecular data on S. squamata and C. obvelatus, which will be useful in future epidemiological and phylogenetic studies of these widely distributed, but less molecularly studied parasites.


Asunto(s)
Aves , Filogenia , Animales , Aves/parasitología , Femenino , Masculino , Enfermedades de las Aves/parasitología , Enfermedades de las Aves/epidemiología , Nematodos/genética , Nematodos/clasificación , Israel , Italia , ARN Ribosómico 28S/genética
10.
J Helminthol ; 98: e47, 2024 Jun 03.
Artículo en Inglés | MEDLINE | ID: mdl-38828707

RESUMEN

Relative to the numerous studies focused on mammalian schistosomes, fewer include avian schistosomatids particularly in the southern hemisphere. This is changing and current research emerging from the Neotropics shows a remarkable diversity of endemic taxa. To contribute to this effort, nine ducks (Spatula cyanoptera, S.versicolor, Netta peposaca), 12 swans (Cygnus melancoryphus) and 1,400 Physa spp. snails from Chile and Argentina were collected for adults and larval schistosomatids, respectively. Isolated schistosomatids were preserved for morphological and molecular analyses (28S and COI genes). Four different schistosomatid taxa were retrieved from birds: Trichobilharzia sp. in N. peposaca and S. cyanoptera that formed a clade; S.cyanoptera and S. versicolor hosted Trichobilharzia querquedulae; Cygnus melancoryphus hosted the nasal schistosomatid, Nasusbilharzia melancorhypha; and one visceral, Schistosomatidae gen. sp., which formed a clade with furcocercariae from Argentina and Chile from previous work. Of the physid snails, only one from Argentina had schistosomatid furcocercariae that based on molecular analyses grouped with T. querquedulae. This study represents the first description of adult schistosomatids from Chile as well as the elucidation of the life cycles of N.melancorhypha and T. querquedulae in Chile and Neotropics, respectively. Without well-preserved adults, the putative new genus Schistosomatidae gen. sp. could not be described, but its life cycle involves Chilina spp. and C. melancoryphus. Scanning electron microscopy of T. querquedulae revealed additional, undescribed morphological traits, highlighting its diagnostic importance. Authors stress the need for additional surveys of avian schistosomatids from the Neotropics to better understand their evolutionary history.


Asunto(s)
Estadios del Ciclo de Vida , Filogenia , Schistosomatidae , Animales , Schistosomatidae/genética , Schistosomatidae/clasificación , Schistosomatidae/aislamiento & purificación , Schistosomatidae/crecimiento & desarrollo , Schistosomatidae/anatomía & histología , Chile , Argentina , Aves/parasitología , Enfermedades de las Aves/parasitología , ARN Ribosómico 28S/genética , Caracoles/parasitología , América del Sur , Complejo IV de Transporte de Electrones/genética
11.
PeerJ ; 12: e17480, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38827288

RESUMEN

Background: Barbronia, a genus of freshwater macrophagous leeches, belongs to Erpobdelliformes (Salifidae: Clitellata: Annelida), and B. weberi, a well-known leech within this genus, has a worldwide distribution. However, the systematics of Barbronia have not yet been adequately investigated, primarily due to a few molecular markers, and only 20 Barbronia sequences available in the GenBank database. This gap significantly limits our understanding of the Barbronia species identification, as well as the phylogenetic placement of the genus Barbronia within Salifidae. Methods: Next-generation sequencing (NGS) was used to simultaneously capture the entire mitochondrial genome and the full-length 18S/28S rDNA sequences. The species boundary of Barbronia species was estimated using bGMYC and bPTP methods, based on all available Barbronia COI sequences. Uncorrected COI p-distance was calculated in MEGA. A molecular data matrix consisting of four loci (COI, 12S, 18S, and 28S rDNA) for outgroups (three Haemopis leeches) and 49 erpobdellid leeches, representing eight genera within the Suborder Erpobdelliformes was aligned using MAFFT and LocARNA. This matrix was used to reconstruct the phylogenetic relationship of Barbronia via Bayesian inference (BI) and the maximum likelihood (ML) method. Results: The full lengths of the mitochondrial genome, 18S and 28S rDNAs of B. cf. gwalagwalensis, are 14847 bp, 1876 bp 1876 bp, and 2863 bp, respectively. Both bGMYC and bPTP results based on COI data are generally congruent, suggesting that the previously proposed taxa (B. arcana, B. weberi formosana, and B. wuttkei or Erpobdella wuttkei) are synonyms of B. weberi. The specimens listed in the B. gwalagwalensis group, however, are split into at least two Primary Species Hypotheses (PSHs). The p-distance of the first PSH is less than 1.3% but increased to 4.5% when including the secondary PSH (i.e., B. cf. gwalagwalensis). In comparison, the interspecific p-distance between the B. weberi group and the B. gwalagwalensis group ranged from 6.4% to 8.7%, and the intraspecific p-distance within the B. weberi group is less than 0.8%. Considering the species delimitation results and the sufficient large p-distance, the specimen sampled in China is treated as B. cf. gwalagwalensis. The monophyly of the four Erpobdelliformes families Salifidae, Orobdellidae, Gastrostomobdellidae sensu stricto and Erpobdellidae is well supported in ML and BI analysis based on a data of four markers. Within the Salifidae, a well-supported Barbronia is closely related to a clade containing Odontobdella and Mimobdella, and these three genera are sister to a clade consisted of Salifa and Linta. According to the results of this study, the strategy of simultaneous obtaining both whole mitochondria and nuclear markers from extensively sampled Salifids species using NGS is expected to fathom both the species diversity of B. gwalagwalensis and the evolutionary relationship of Salifidae.


Asunto(s)
Filogenia , Animales , Genoma Mitocondrial/genética , Sanguijuelas/genética , Sanguijuelas/clasificación , Secuenciación de Nucleótidos de Alto Rendimiento , ARN Ribosómico 28S/genética
12.
Mycologia ; 116(4): 509-535, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38742888

RESUMEN

South Africa has an indigenous rust (Pucciniales) funga of approximately 460 species. This funga was sampled with species from as many genera as possible. The nuclear ribosomal large subunit (28S) region was amplified from samples representing 110 indigenous species, as well as the small subunit (18S) region and the cytochrome c oxidase subunit 3 (CO3) in some cases, and these were used in phylogenetic analyses. One new species is described, 12 new combinations made, six names reinstated, and two life history connections made. The life histories of this funga were summarized; it is dominated by species with contracted life histories. The majority of species are autoecious, with a small proportion being heteroecious. Of the autoecious species, many will likely be homothallic with no spermagonia. A shortened life history with homothallism allows for a single basidiospore infection to initiate a local population buildup under the prevailing unpredictable climatic conditions. Suggestions are made as to the possible origin of this funga based on the development of the modern South African flora. It is postulated that the rusts of South Africa are of relatively recent origin, consisting of three groups. Firstly, there is an African tropical element with members of the Mikronegerineae (Hemileia), the Sphaerophragmiaceae (Puccorchidium, Sphaerophragmium), and certain Uredinineae (Stomatisora). Their immediate ancestors likely occurred in the tropical forests of Africa during the Paleogene. Secondly, there is a pantropical element including the Raveneliaceae (e.g., Diorchidium, Maravalia, Ravenelia sensu lato, Uropyxis). This likely diversified during the Neogene, when the mimosoids became the dominant trees of the developing savannas. Thirdly, the Pucciniaceae invaded Africa as this continent pushed northward closing the Tethys Sea. They diversified with the development of the savannas as these become the dominant habitat in most of Africa, and are by far the largest component of the South African rust funga.


Asunto(s)
Basidiomycota , ADN de Hongos , Filogenia , Sudáfrica , Basidiomycota/genética , Basidiomycota/clasificación , ADN de Hongos/genética , Análisis de Secuencia de ADN , ARN Ribosómico 28S/genética , ADN Ribosómico/genética , Complejo IV de Transporte de Electrones/genética , ARN Ribosómico 18S/genética
13.
Mol Ecol Resour ; 24(5): e13965, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38733216

RESUMEN

The ITS-2-rRNA has been particularly useful for nematode metabarcoding but does not resolve all phylogenetic relationships, and reference sequences are not available for many nematode species. This is a particular issue when metabarcoding complex communities such as wildlife parasites or terrestrial and aquatic free-living nematode communities. We have used markerDB to produce four databases of distinct regions of the rRNA cistron: the 18S rRNA gene, the 28S rRNA gene, the ITS-1 intergenic spacer and the region spanning ITS-1_5.8S_ITS-2. These databases comprise 2645, 254, 13,461 and 10,107 unique full-length sequences representing 1391, 204, 1837 and 1322 nematode species, respectively. The comparative analysis illustrates the complementary value but also reveals a better representation of Clade III, IV and V than Clade I and Clade II nematodes in each case. Although the ITS-1 database includes the largest number of unique full-length sequences, the 18S rRNA database provides the widest taxonomic coverage. We also developed PrimerTC, a tool to assess primer sequence conservation across any reference sequence database, and have applied it to evaluate a large number of previously published rRNA cistron primers. We identified sets of primers that currently provide the broadest taxonomic coverage for each rRNA marker across the nematode phylum. These new resources will facilitate more comprehensive metabarcoding of nematode communities using either short-read or long-read sequencing platforms. Further, PrimerTC is available as a simple WebApp to guide or assess PCR primer design for any genetic marker and/or taxonomic group beyond the nematode phylum.


Asunto(s)
Código de Barras del ADN Taxonómico , Nematodos , Animales , Nematodos/genética , Nematodos/clasificación , Código de Barras del ADN Taxonómico/métodos , ARN Ribosómico 18S/genética , ADN Espaciador Ribosómico/genética , ARN Ribosómico 28S/genética , Cartilla de ADN/genética , ADN de Helmintos/genética , Filogenia , Metagenómica/métodos
14.
Fungal Biol ; 128(3): 1800-1805, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38796264

RESUMEN

It has been the aim of this study to molecular-taxonomically identify 15 Beauveria isolates collected from different geographical regions and insect hosts in Argentina and to investigate the levels of inter- and intra-specific diversity across this set of isolates. Based on phylogenetic analyses of EF1A-RPB1-RPB2 concatenated genes and BLOC markers, all Beauveria strains were identify as Beauveria bassiana. Within the B. bassiana clades of both phylogenies, isolates from Argentina were not clustered according to geographic origin or host. The 15 fungal isolates were further analyzed by PCR amplification of the intron insertion hot spot region of the nuclear 28S rRNA encoding sequence. By intron sequence and position, seven different group-I intron combinations termed variants A, B1, B2, C, D, E and F were found in the 15 isolates under study. Variants B1/B2 consisting of a single 28Si2 intron were found in ten isolates, whereas variant A occurred twice and variants C through F were unique across the set of isolates under study. The determination of the different introns and intron combinations in the 28S rRNA gene is a powerful tool for achieving infraspecific differentiation of B. bassiana isolates from Argentina.


Asunto(s)
Beauveria , Variación Genética , Filogenia , ARN Ribosómico 28S , Beauveria/genética , Beauveria/clasificación , Beauveria/aislamiento & purificación , Argentina , ARN Ribosómico 28S/genética , Animales , ADN de Hongos/genética , Insectos/microbiología , Análisis de Secuencia de ADN , Datos de Secuencia Molecular , Intrones , ADN Ribosómico/genética , Análisis por Conglomerados
15.
Syst Parasitol ; 101(3): 41, 2024 May 13.
Artículo en Inglés | MEDLINE | ID: mdl-38740609

RESUMEN

Dicrocoeliid trematodes were detected from Iwasaki's snail-eating snake Pareas iwasakii in Iriomote Island, Okinawa Prefecture, Japan, and described as a new species Paradistomum dextra n. sp. in the present study. This new species can be distinguished from the type series of the other members of the genus based on size of eggs and morphological characteristics of body, oral and ventral suckers, and reproductive organs. However, the new species was hard to distinguish from Paradistomum megareceptaculum infecting snakes in Japan, including Iriomote Island where is the type locality of the new species, because it is closely similar to some part of the broad range of morphological variations in P. megareceptaculum. On the other hand, a partial sequence of 28S ribosomal DNA clearly distinguished these two species. Moreover, the new species' host snake Pareas iwasakii is reported to exclusively feed on land snails while host snakes of P. megareceptaculum feed on small vertebrates, indicating that the new species is also ecologically different from P. megareceptaculum. We also redescribed P. megareceptaculum based on adults sampled in this study and past studies to record the morphological variations of this species.


Asunto(s)
Especificidad de la Especie , Trematodos , Animales , Japón , Trematodos/clasificación , Trematodos/anatomía & histología , Trematodos/genética , Caracoles/parasitología , ARN Ribosómico 28S/genética , Serpientes/parasitología , Filogenia
16.
Invertebr Syst ; 382024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38744525

RESUMEN

The rhinebothriidean tapeworm family Escherbothriidae has recently been expanded to include the genus Ivanovcestus , species of which parasitise arhynchobatid skates. Similarities in morphology and host associations between Ivanovcestus and Semiorbiseptum - a genus yet to be assigned to one of the families in the order Rhinebothriidea - led us to explore the possibility that Semiorbiseptum might also belong in the Escherbothriidae. Morphological similarities with Scalithrium ivanovae , Scalithrium kirchneri and Rhinebothrium scobinae , all of which also parasitise arhynchobatid skates, raised questions regarding the generic placements of these species. In addition, new collections from the skate Sympterygia brevicaudata revealed two new species that morphologically resemble species of Ivanovcestus . A combination of morphological and molecular data were used to assess the generic placement of the newly discovered species and refine our understanding of the membership of the family Escherbothriidae. Sequence data for the D1-D3 region of the 28S rDNA gene were generated de novo for 14 specimens of 7 rhinebothriidean species and combined with comparable published data to represent all 6 families in the Rhinebothriidea in the analysis. The phylogenetic tree resulting from maximum likelihood analysis strongly supports the inclusion of the genus Semiorbiseptum in the family Escherbothriidae. Our work also suggests that the skate-hosted species previously assigned to Scalithrium and Rhinebothrium are also members of Semiorbiseptum and that Ivanovcestus is a junior synonym of Semiorbiseptum . Six species are transferred to Semiorbiseptum , bringing the total number of species in the genus to ten. The diagnosis of Semiorbiseptum is amended to accommodate the additional species. A second species in the previously monotypic type genus of the family, Escherbothrium , is described. The diagnosis of the Escherbothriidae is amended to include the new and transferred species. This study underscores the importance of integrating morphological and molecular data in bringing resolution to cestode systematics. We believe our findings provide a robust foundation for future research into the evolutionary history and host associations of cestodes within the order Rhinebothriidea and beyond. These also highlight the importance of expanding our understanding of skate-hosted cestodes. ZooBank: urn:lsid:zoobank.org:pub:8052AFCA-5FBD-4430-95F4-0E5E368DEA3D.


Asunto(s)
Cestodos , Filogenia , Rajidae , Cestodos/genética , Cestodos/clasificación , Animales , Rajidae/parasitología , Especificidad de la Especie , ARN Ribosómico 28S/genética
17.
Syst Parasitol ; 101(4): 42, 2024 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-38795265

RESUMEN

Clinostomum is a cosmopolitan genus of trematodes that infect piscivorous birds, freshwater molluscs, freshwater fish and amphibians. Herein, a novel species of Clinostomum is described based on morphological and molecular data from an adult in the oral cavity of the great blue heron Ardea herodias and metacercariae collected from the gills and skin of American bullfrog tadpoles Rana catesbeiana. The novel species shares similar qualitative and quantitative morphological features with a congener, Clinostomum marginatum, which has overlap in host and geographic distribution. The most notable morphological difference when compared to C. marginatum is the greater posterior testis length of the novel species. Molecular data resolved similarities with morphological comparisons to nominal species and supports the establishment of a novel species. Molecular data include partial small ribosomal subunit (18S rRNA gene), ribosomal internal transcribed spacer regions (ITS1, 5.8S rRNA gene, and ITS2), partial large ribosomal subunit (28S rRNA gene), cytochrome c oxidase subunit 1 gene (cox1), and nicotinamide adenine dinucleotide dehydrogenase subunit 1 gene (nad1) sequences. Phylogenetic analyses place the novel species in a sister clade to C. marginatum. Morphological and molecular data, combined with phylogenetic analyses support the establishment of Clinostomum dolichorchum n. sp.


Asunto(s)
Filogenia , Rana catesbeiana , Especificidad de la Especie , Trematodos , Animales , Trematodos/clasificación , Trematodos/genética , Trematodos/anatomía & histología , Rana catesbeiana/parasitología , ARN Ribosómico 18S/genética , Aves/parasitología , ADN Espaciador Ribosómico/genética , ARN Ribosómico 28S/genética
18.
J Parasitol ; 110(3): 186-194, 2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38700436

RESUMEN

Leech specimens of the genus Pontobdella (Hirudinida: Piscicolidae) were found off the coast of the state of Oaxaca (Pacific) as well as in Veracruz and Tabasco (Gulf of Mexico), Mexico. Based on the specimens collected in Oaxaca, a redescription of Pontobdella californiana is provided, with emphasis on the differences in the reproductive organs with the original description of the species. In addition, leech cocoons assigned to P. californiana were found attached to items hauled by gillnets and studied using scanning electron microscopy and molecular approaches. Samples of Pontobdella macrothela were found in both Pacific and Atlantic oceans, representing new geographic records. The phylogenetic position of P. californiana is investigated for the first time, and with the addition of Mexican samples of both species, the phylogenetic relationships within Pontobdella are reinvestigated. Parsimony and maximum-likelihood phylogenetic analysis were based on mitochondrial (cytochrome oxidase subunit I [COI] and 12S rRNA) and nuclear (18S rRNA and 28S rRNA) DNA sequences. Based on our results, we confirm the monophyly of Pontobdella and the pantropical distribution of P. macrothela with a new record in the Tropical Eastern Pacific.


Asunto(s)
Sanguijuelas , Microscopía Electrónica de Rastreo , Filogenia , Animales , Sanguijuelas/clasificación , Sanguijuelas/genética , Sanguijuelas/anatomía & histología , México , Microscopía Electrónica de Rastreo/veterinaria , Océano Pacífico , Océano Atlántico , ADN Ribosómico/química , ARN Ribosómico 28S/genética , Enfermedades de los Peces/parasitología , Golfo de México/epidemiología , Complejo IV de Transporte de Electrones/genética , Infestaciones Ectoparasitarias/parasitología , Infestaciones Ectoparasitarias/veterinaria , ARN Ribosómico 18S/genética , Datos de Secuencia Molecular , Alineación de Secuencia/veterinaria , Funciones de Verosimilitud , Peces/parasitología
19.
J Helminthol ; 98: e37, 2024 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-38706044

RESUMEN

The genus Ancyrocephalus sensu lato is a large assemblage of species of dactylogyrid monopisthocotyleans without clear taxonomic boundaries. Despite an urgent need for revision, only three representatives of this taxon have been molecularly characterised so far. We found specimens of Ancyrocephalus curtus, a previously non-genotyped species, in gills of Perccottus glenii caught in the River Syumnyur, Amur Basin, Russia. The aim of this study was to assess the phylogenetic position of this parasite using partial sequences of 28S rRNA gene. In the phylogenetic tree, A. curtus appeared as a sister taxon to the dactylogyrine genus Gobioecetes. The new molecular evidence supports the hypothesis about the non-monophyletic status of Ancyrocephalus sensu lato.


Asunto(s)
Enfermedades de los Peces , Branquias , Perciformes , Filogenia , ARN Ribosómico 28S , Animales , Enfermedades de los Peces/parasitología , Branquias/parasitología , Perciformes/parasitología , ARN Ribosómico 28S/genética , Federación de Rusia , Ríos/parasitología , Infecciones por Trematodos/parasitología , Infecciones por Trematodos/veterinaria , Platelmintos/clasificación , Platelmintos/genética , Platelmintos/aislamiento & purificación , ADN de Helmintos/genética , Trematodos/genética , Trematodos/clasificación , Trematodos/aislamiento & purificación , ADN Ribosómico/genética , Análisis de Secuencia de ADN
20.
J Helminthol ; 98: e38, 2024 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-38721629

RESUMEN

The deepest recorded depth for trematodes currently stands at approximately 6200 m. This depth record was achieved solely through sequence datasets of Lepidapedon sp. obtained from a gastropod. Given that trematodes of this genus typically use fish as definitive hosts, the origin of the trematode sequence was thought to be larval stages. However, the specific species remained unclear owing to the absence of reported adult-stage sequences. In the present study, we definitively identified the deepest trematode as Lepidapedon oregonense by comparing 28S ribosomal DNA sequences from adult worms from the macrourid fish Coelorinchus gilberti with data from the gastropod in the previous study.


Asunto(s)
ADN de Helmintos , ADN Ribosómico , Filogenia , ARN Ribosómico 28S , Trematodos , Animales , Trematodos/clasificación , Trematodos/genética , Trematodos/aislamiento & purificación , ARN Ribosómico 28S/genética , ADN de Helmintos/genética , ADN Ribosómico/genética , Gastrópodos/parasitología , Análisis de Secuencia de ADN , Peces/parasitología , Enfermedades de los Peces/parasitología , Infecciones por Trematodos/parasitología , Infecciones por Trematodos/veterinaria
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