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1.
Am J Physiol Cell Physiol ; 314(2): C191-C201, 2018 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-29118028

RESUMEN

Although the functionality of the lens water channels aquaporin 1 (AQP1; epithelium) and AQP0 (fiber cells) is well established, less is known about the role of AQP5 in the lens. Since in other tissues AQP5 functions as a regulated water channel with a water permeability (PH2O) some 20 times higher than AQP0, AQP5 could function to modulate PH2O in lens fiber cells. To test this possibility, a fluorescence dye dilution assay was used to calculate the relative PH2O of epithelial cells and fiber membrane vesicles isolated from either the mouse or rat lens, in the absence and presence of HgCl2, an inhibitor of AQP1 and AQP5. Immunolabeling of lens sections and fiber membrane vesicles from mouse and rat lenses revealed differences in the subcellular distributions of AQP5 in the outer cortex between species, with AQP5 being predominantly membranous in the mouse but predominantly cytoplasmic in the rat. In contrast, AQP0 labeling was always membranous in both species. This species-specific heterogeneity in AQP5 membrane localization was mirrored in measurements of PH2O, with only fiber membrane vesicles isolated from the mouse lens, exhibiting a significant Hg2+-sensitive contribution to PH2O. When rat lenses were first organ cultured, immunolabeling revealed an insertion of AQP5 into cortical fiber cells, and a significant increase in Hg2+-sensitive PH2O was detected in membrane vesicles. Our results show that AQP5 forms functional water channels in the rodent lens, and they suggest that dynamic membrane insertion of AQP5 may regulate water fluxes in the lens by modulating PH2O in the outer cortex.


Asunto(s)
Acuaporina 5/metabolismo , Membrana Celular/metabolismo , Cristalino/metabolismo , Agua/metabolismo , Animales , Acuaporina 5/antagonistas & inhibidores , Acuaporinas/metabolismo , Membrana Celular/efectos de los fármacos , Células Epiteliales/metabolismo , Proteínas del Ojo/metabolismo , Cristalino/citología , Cristalino/efectos de los fármacos , Cloruro de Mercurio/farmacología , Ratones Endogámicos C57BL , Modelos Biológicos , Técnicas de Cultivo de Órganos , Permeabilidad , Ratas Wistar , Especificidad de la Especie , Factores de Tiempo
2.
J Dent Res ; 96(12): 1414-1421, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-28665757

RESUMEN

We recently reported the presence of anti-aquaporin 5 (AQP5) immunoglobulin G (IgG) in patients with primary Sjögren syndrome (SS) with a sensitivity of 0.73 and a specificity of 0.68. The aim of this study was to identify functional epitopes for the anti-AQP5 autoantibodies detected in control subjects and patients with SS. Recognition of epitopes by anti-AQP5 autoantibodies in sera ( n = 13 for control and n = 24 for SS) or purified IgG ( n = 1 for control and n = 3 for SS) was evaluated by indirect immunofluorescence (IIF) assay performed in the presence or absence of peptides corresponding to the second transmembrane helix and extracellular loops A, C, and E of AQP5. Functional epitopes were determined by measuring the effects of purified IgG and neutralizing peptides on transepithelial osmotic permeability (PfT) of MDCK cells expressing AQP5. In the IIF assay, 89% of SS samples were inhibited by at least 1 peptide, while only half of control samples were inhibited by any peptide. Overall, SS samples were inhibited by peptides corresponding to extracellular loops A, C, and E by 40% to 50%, whereas control samples were inhibited only by peptides corresponding to loop E by <20%. A cyclized peptide (E1) mimicking loop E was most frequently recognized and best differentiated between the SS and control samples. Incubation of MDCK-AQP5 cells with SS but not with control IgG, significantly decreased PfT, which was reversed by neutralization of IgG binding to any of the extracellular loops. In conclusion, the anti-AQP5 autoantibodies detected in control and SS groups showed differences in fine specificity to the functional epitopes of AQP5. The prevalent recognition of functional epitopes by anti-AQP5 autoantibodies from SS patients suggests that anti-AQP5 autoantibodies act as mediators of glandular hypofunction and are a potential therapeutic target in SS.


Asunto(s)
Acuaporina 5/antagonistas & inhibidores , Epítopos/inmunología , Síndrome de Sjögren/inmunología , Secuencia de Aminoácidos , Autoanticuerpos/inmunología , Técnica del Anticuerpo Fluorescente Indirecta , Humanos , Inmunoglobulina G/inmunología , Péptidos/inmunología
3.
PLoS One ; 9(6): e100282, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24941004

RESUMEN

P2X7 receptors, ATP-gated cation channels, are specifically expressed in alveolar epithelial cells. The pathophysiological function of this lung cell type, except a recently reported putative involvement in surfactant secretion, is unknown. In addition, P2X7 receptor-deficient mice show reduced inflammation and lung fibrosis after exposure with bleomycin. To elucidate the role of the P2X7 receptor in alveolar epithelial type I cells we characterized the pulmonary phenotype of P2X7 receptor knockout mice by using immunohistochemistry, western blot analysis and real-time RT PCR. No pathomorphological signs of fibrosis were found. Results revealed, however, a remarkable loss of aquaporin-5 protein and mRNA in young knockout animals. Additional in vitro experiments with bleomycin treated precision cut lung slices showed a greater sensitivity of the P2X7 receptor knockout mice in terms of aquaporin-5 reduction as wild type animals. Finally, P2X7 receptor function was examined by using the alveolar epithelial cell lines E10 and MLE-12 for stimulation experiments with bleomycin. The in vitro activation of P2X7 receptor was connected with an increase of aquaporin-5, whereas the inhibition of the receptor with oxidized ATP resulted in down regulation of aquaporin-5. The early loss of aquaporin-5 which can be found in different pulmonary fibrosis models does not implicate a specific pathogenetic role during fibrogenesis.


Asunto(s)
Acuaporina 5/genética , Células Epiteliales/metabolismo , Alveolos Pulmonares/metabolismo , Fibrosis Pulmonar/genética , Receptores Purinérgicos P2X7/deficiencia , Adenosina Trifosfato/análogos & derivados , Adenosina Trifosfato/farmacología , Animales , Acuaporina 5/agonistas , Acuaporina 5/antagonistas & inhibidores , Acuaporina 5/metabolismo , Bleomicina/farmacología , Línea Celular , Células Epiteliales/efectos de los fármacos , Células Epiteliales/patología , Regulación de la Expresión Génica , Ratones , Ratones Noqueados , Alveolos Pulmonares/efectos de los fármacos , Alveolos Pulmonares/patología , Fibrosis Pulmonar/inducido químicamente , Fibrosis Pulmonar/metabolismo , Fibrosis Pulmonar/patología , ARN Mensajero/genética , ARN Mensajero/metabolismo , Receptores Purinérgicos P2X7/genética , Transducción de Señal , Técnicas de Cultivo de Tejidos
4.
Biochem Biophys Res Commun ; 448(4): 355-60, 2014 Jun 13.
Artículo en Inglés | MEDLINE | ID: mdl-24747567

RESUMEN

Aquaporin-5 (AQP5) is a water-selective channel protein that is expressed in submucosal glands and alveolar epithelial cells in the lungs. Recent studies have revealed that AQPs regulate not only water metabolism, but also some cellular functions such as cell growth and migration. Here, we report the role of AQP5 in inflammatory responses. In MLE-12 cells, knockdown of AQP5 using siRNA (10-50 nM) attenuated TNF-α-induced expression of keratinocyte chemoattractant (KC) mRNA and protein. Conversely, in NIH-3T3 cells, overexpression of AQP5 increased KC expression, NF-κB activation, and ERK phosphorylation. The AQP5-induced increase of KC expression was diminished by treatment with ERK inhibitors. Taken together, we propose a new function of AQP5 as an inflammatory signal potentiator, which may be mediated by increased activation of ERK and NF-κB.


Asunto(s)
Acuaporina 5/metabolismo , Quimiocinas/genética , Quimiocinas/metabolismo , Queratinocitos/metabolismo , FN-kappa B/metabolismo , Células Epiteliales Alveolares/metabolismo , Animales , Acuaporina 5/antagonistas & inhibidores , Acuaporina 5/genética , Línea Celular , Quimiocina CXCL1/genética , Quimiocina CXCL1/metabolismo , Expresión Génica , Técnicas de Silenciamiento del Gen , Inflamación/metabolismo , Sistema de Señalización de MAP Quinasas , Ratones , Células 3T3 NIH , ARN Mensajero/genética , ARN Mensajero/metabolismo , ARN Interferente Pequeño/genética , Factor de Necrosis Tumoral alfa/metabolismo
5.
Int J Oral Sci ; 5(4): 217-23, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24158141

RESUMEN

Botulinum toxin A (BTXA) has been used in several clinical trials to treat excessive glandular secretion; however, the precise mechanism of its action on the secretory function of salivary gland has not been fully elucidated. In this study, we aimed to investigate the effect of BTXA on secretion of submandibular gland in rabbits and to identify its mechanism of action on the secretory function of salivary gland. At 12 weeks after injection with 5 units of BTXA, we found a significant decrease in the saliva flow from submandibular glands, while the salivary amylase concentration increased. Morphological analysis revealed reduction in the size of acinar cells with intracellular accumulation of secretory granules that coalesced to form a large ovoid structure. Expression of M3-muscarinic acetylcholine receptor (M3 receptor) and aquaporin-5 (AQP5) mRNA decreased after BTXA treatment, and distribution of AQP5 in the apical membrane was reduced at 1, 2 and 4 weeks after BTXA injection. Furthermore, BTXA injection was found to induce apoptosis of acini. These results indicate that BTXA decreases the fluid secretion of submandibular glands and increases the concentration of amylase in saliva. Decreased expression of M3 receptor and AQP5, inhibition of AQP5 translocation, and cell apoptosis might involve in BTXA-reduced fluid secretion of submandibular glands.


Asunto(s)
Toxinas Botulínicas Tipo A/farmacología , Fármacos Neuromusculares/farmacología , Saliva/efectos de los fármacos , Glándula Submandibular/efectos de los fármacos , Amilasas/efectos de los fármacos , Animales , Apoptosis/efectos de los fármacos , Acuaporina 5/antagonistas & inhibidores , Membrana Celular/efectos de los fármacos , Etiquetado Corte-Fin in Situ , Masculino , Microscopía Electrónica de Transmisión , Tamaño de los Órganos , Conejos , Distribución Aleatoria , Receptor Muscarínico M3/antagonistas & inhibidores , Saliva/metabolismo , Proteínas y Péptidos Salivales/efectos de los fármacos , Salivación/efectos de los fármacos , Tasa de Secreción/efectos de los fármacos , Vesículas Secretoras/efectos de los fármacos , Glándula Submandibular/metabolismo , Glándula Submandibular/patología , Factores de Tiempo
6.
Tumour Biol ; 34(3): 1743-51, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23436048

RESUMEN

Aquaporin 5 (AQP5) promotes the progression and invasion of several cancers, but its role in the tumorigenesis of human gastric carcinoma (GC) has not been clearly defined. Here, we investigated the potential functions of AQP5 in the proliferation and migration of human GC. RT-PCR and western blotting were used to detect the expression of AQP5 in human GC cell lines. Immunohistochemistry was applied to evaluate the expression of AQP5 in human GC tissues and corresponding normal tissues. Following ectopic overexpression of AQP5 or inhibition of AQP5 by its inhibitor, acetazolamide (AZA), cell proliferation and migration of AGS cells were analyzed by MTT assay, colony formation assay, and wound healing assay. Heterogeneous expression of AQP5 mRNA and protein was observed in human GC cell lines MKN45, MKN28, AGS, and SGC7901. AQP5 was up-regulated in GC tissues in comparison to corresponding normal tissues. AQP5 protein was mainly localized in the cell membrane. Overexpression of AQP5 was correlated with enhanced lymph node metastasis. In vitro, overexpression of AQP5 notably enhanced, while inhibition of AQP5 by AZA significantly attenuated the proliferation and migration of AGS cells. Our data indicate that AQP5 may play an important role in the tumorigenesis and progression of human GC and suggest that AQP5 is a potential therapeutic target against GC.


Asunto(s)
Acetazolamida/farmacología , Adenocarcinoma/secundario , Acuaporina 5/metabolismo , Mucosa Gástrica/metabolismo , Neoplasias Gástricas/patología , Adenocarcinoma/tratamiento farmacológico , Adenocarcinoma/metabolismo , Anticonvulsivantes/farmacología , Apoptosis/efectos de los fármacos , Acuaporina 5/antagonistas & inhibidores , Western Blotting , Movimiento Celular/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Ensayo de Unidades Formadoras de Colonias , Ensayo de Inmunoadsorción Enzimática , Femenino , Citometría de Flujo , Humanos , Técnicas para Inmunoenzimas , Metástasis Linfática , Masculino , Persona de Mediana Edad , Invasividad Neoplásica , Estadificación de Neoplasias , Estómago/efectos de los fármacos , Neoplasias Gástricas/tratamiento farmacológico , Neoplasias Gástricas/metabolismo , Células Tumorales Cultivadas , Cicatrización de Heridas
7.
Respirology ; 17(7): 1144-9, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22809117

RESUMEN

BACKGROUND AND OBJECTIVE: The aim of this study was to investigate the changes in expression of aquaporins (AQP) during differentiation of human bronchial epithelial cells and the role of lipopolysaccharide (LPS) in AQP expression. METHODS: The levels of AQP3, AQP4 and AQP5 transcripts in human primary cultured bronchial epithelial cells were evaluated by real-time polymerase chain reaction at different time points before and after treatment with LPS. Western blotting was performed to assess the effects of LPS on AQP3, AQP4 and AQP5 expressions in normal human bronchial epithelial cells. Using pharmacological tools, the pathways involved in the regulation of LPS-induced changes in AQP5 were further explored. RESULTS: The levels of AQP3, AQP4 and AQP5 transcripts were increased during differentiation of human bronchial epithelial cells. Expression of AQP5, but not AQP3 or AQP4, was downregulated by LPS. LPS-induced downregulation of AQP5 was inhibited by p38 and c-Jun N-terminal kinase (JNK) inhibitors. CONCLUSIONS: This study demonstrated that LPS decreases AQP5, but not AQP3 or AQP4, expression in human primary bronchial epithelial cells. The downregulation of AQP5 expression is mediated through a p38/JNK signalling pathway.


Asunto(s)
Acuaporina 3/biosíntesis , Acuaporina 4/biosíntesis , Acuaporina 5/antagonistas & inhibidores , Bronquios/efectos de los fármacos , Diferenciación Celular/efectos de los fármacos , Lipopolisacáridos/farmacología , Mucosa Respiratoria/efectos de los fármacos , Acuaporina 5/biosíntesis , Western Blotting , Bronquios/citología , Bronquios/metabolismo , Técnicas de Cultivo de Célula , Humanos , Reacción en Cadena en Tiempo Real de la Polimerasa , Mucosa Respiratoria/metabolismo , Transducción de Señal
8.
Int J Oncol ; 41(1): 67-75, 2012 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-22576684

RESUMEN

Aquaporins (AQPs) are a membrane protein family involved in the selective transport of water across cell membranes. Recent studies have reported the expression of AQP5 in several tumor types such as gastric, pulmonary, ovarian, pancreatic and colorectal cancer. We have previously reported the expression on tumor cells and the important role of AQP3 on cell growth in tongue cancer. However, little is known about the expression and precise role of AQP5 on squamous cell carcinoma (SCC) of the tongue. We investigated the expression of AQP5 and AQP3 in human oral SCC and adenoid cystic carcinoma (ACC). Overexpression of both AQP5 and AQP3 were immunohistochemically observed on tumor cells in SCC, whereas ACC cells were faintly stained with those antibodies against AQPs. Treatment with pan-AQP inhibitor or specific AQP5-siRNA showed inhibition of cell growth in SCC cell lines via the inhibition of integrins and the mitogen-activated protein kinase pathway. AQPs play important roles in cell growth in SCC rather than ACC.


Asunto(s)
Acuaporina 3/metabolismo , Acuaporina 5/metabolismo , Carcinoma Adenoide Quístico/metabolismo , Carcinoma de Células Escamosas/metabolismo , Neoplasias de las Glándulas Salivales/metabolismo , Neoplasias de la Lengua/metabolismo , Adulto , Anciano , Anciano de 80 o más Años , Acuaporina 3/antagonistas & inhibidores , Acuaporina 3/genética , Acuaporina 5/antagonistas & inhibidores , Acuaporina 5/genética , Carcinoma Adenoide Quístico/patología , Carcinoma de Células Escamosas/patología , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Sulfato de Cobre/farmacología , Femenino , Fibroblastos/metabolismo , Técnicas de Silenciamiento del Gen , Humanos , Masculino , Persona de Mediana Edad , Interferencia de ARN , Neoplasias de las Glándulas Salivales/patología , Neoplasias de la Lengua/patología
9.
PLoS One ; 6(12): e28492, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-22145049

RESUMEN

Aquaporin (AQP) is a family of transmembrane proteins for water transport. Recent studies revealed that AQPs are likely to play a role in tumor progression and invasion. We aimed to examine the potential role of AQP5 in the progression of human breast cancer cells. Expression of AQP5 mRNA and protein was seen in human breast cancer cell line (both MCF7 and MDA-MB-231) by RT-PCR and immunoblotting analysis. Immunoperoxidase labeling of AQP5 was observed at ductal epithelial cells of human breast tissues. In benign tumor, AQP5 labeling was mainly seen at the apical domains of ductal epithelial cells. In contrast, in invasive ductal carcinoma, prominent AQP5 labeling was associated with cancer cells, whereas some ducts were unlabeled and apical polarity of AQP5 in ducts was lost. Cell proliferation (BrdU incorporation assay) and migration of MCF7 cells were significantly attenuated by lentivirus-mediated AQP5-shRNA transduction. Hyperosmotic stress induced by sorbitol treatment (100 mM, 24 h) reduced AQP5 expression in MCF7 cells, which was also associated with a significant reduction in cell proliferation and migration. Taken together, prominent AQP5 expression in breast cancer cells with the loss of polarity of ductal epithelial cells was seen during the progression of breast carcinoma. shRNA- or hyperosmotic stress-induced reduction in AQP5 expression of MCF7 cells was associated with significantly reduced cell proliferation and migration. In conclusion, AQP5 overexpression is likely to play a role in cell growth and metastasis of human breast cancer and could be a novel target for anti-breast cancer treatment.


Asunto(s)
Acuaporina 5/metabolismo , Neoplasias de la Mama/patología , Carcinoma Ductal de Mama/secundario , Movimiento Celular , Proliferación Celular , Acuaporina 5/antagonistas & inhibidores , Acuaporina 5/genética , Western Blotting , Neoplasias de la Mama/genética , Neoplasias de la Mama/metabolismo , Carcinoma Ductal de Mama/genética , Carcinoma Ductal de Mama/metabolismo , Femenino , Regulación Neoplásica de la Expresión Génica , Humanos , Técnicas para Inmunoenzimas , Indicadores y Reactivos/farmacología , Metástasis Linfática , Invasividad Neoplásica , Ósmosis/efectos de los fármacos , ARN Mensajero/genética , ARN Interferente Pequeño/genética , Reacción en Cadena en Tiempo Real de la Polimerasa , Sorbitol/farmacología , Estrés Fisiológico/efectos de los fármacos , Células Tumorales Cultivadas
10.
Int Immunol ; 23(10): 613-24, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-21846814

RESUMEN

The pathogenesis of Sjögren's syndrome (SS) is poorly understood. To evaluate an autoimmunization-induced experimental SS model, we firstly observed the phenotype of lymphocyte infiltration in the enlarged submandibular gland (SG). Furthermore, significant activation of caspase-3 and a high ratio of Bax-to-Bcl-2 were detected, indicating the inflammatory apoptosis associated with developmental foci. Meanwhile, the dysregulated cytokines, such as tumor necrosis factor α, IL-1ß and IL-6 mRNA expression, were found to be over-expressed. A progressive decrease of aquaporin 5 and its subcellular translocation from apical to basal membrane in SG was found to be associated with the abnormally expressed M3 muscarinic acetylcholine receptor. This pattern was found to be similar to that seen in human SS and possibly contributed to the saliva secretion deficiency. Thus, this autoimmunization-induced model recapitulates the key features of human SS and may have potential for studying the pathogenesis of human SS.


Asunto(s)
Modelos Animales de Enfermedad , Síndrome de Sjögren/inmunología , Síndrome de Sjögren/patología , Animales , Apoptosis/inmunología , Acuaporina 5/antagonistas & inhibidores , Acuaporina 5/metabolismo , Células Cultivadas , Femenino , Humanos , Interleucina-1beta/genética , Interleucina-1beta/metabolismo , Interleucina-6/genética , Interleucina-6/metabolismo , Linfocitos/inmunología , Linfocitos/patología , Ratones , Ratones Endogámicos C57BL , ARN Mensajero/genética , ARN Mensajero/metabolismo , Bazo/patología , Glándula Submandibular/patología , Factor de Necrosis Tumoral alfa/genética , Factor de Necrosis Tumoral alfa/metabolismo , Factor de Necrosis Tumoral alfa/farmacología
11.
J Physiol Sci ; 59(2): 113-22, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19340551

RESUMEN

Litttle is known about the function of aquaporin (AQP) water channels in human gastric cancer. In the upper or middle part of human stomach, we found that expression level of AQP5 protein in intestinal type of adenocarcinoma was significantly higher than that in accompanying normal mucosa. AQP5 was localized in the apical membrane of the cancer cells. On the other hand, both AQP3 and AQP4 were not up-regulated in the adenocarcinoma. To elucidate the role of AQP5 in cancer cells, AQP5 was exogenously expressed in a cell line of poorly differentiated human gastric adenocarcinoma (MKN45). The AQP5 expression significantly increased the proportion of differentiated cells with a spindle shape, the activity of alkaline phosphatase, a marker for the intestinal epithelial cell type of cancer cells, and the expression level of laminin, an epithelial cell marker. Treatment of the MKN45 cells stably expressing AQP5 with HgCl(2), an inhibitor of aquaporins, significantly decreased the proportion of differentiated cells and the activity of alkaline phosphatase. Our results suggest that up-regulation of AQP5 may be involved in differentiation of human gastric cancer cells.


Asunto(s)
Adenocarcinoma/metabolismo , Adenocarcinoma/patología , Acuaporina 5/metabolismo , Diferenciación Celular/fisiología , Neoplasias Gástricas/metabolismo , Neoplasias Gástricas/patología , Anciano , Anciano de 80 o más Años , Fosfatasa Alcalina/metabolismo , Acuaporina 5/antagonistas & inhibidores , Biomarcadores/metabolismo , Línea Celular Tumoral , Femenino , Humanos , Laminina/metabolismo , Masculino , Cloruro de Mercurio/farmacología , Persona de Mediana Edad
12.
Biochem Biophys Res Commun ; 354(2): 579-84, 2007 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-17250805

RESUMEN

Nitric oxide (NO) is implicated in the pathogenesis of lung inflammation and edema. In this study, the effects of nitric oxide (NO)-donors on membrane water permeability and cell surface expression of aquaporin-5 (AQP5) in mouse lung epithelial cells were examined. NO-donors, GSNO and NOC-18 decreased cell surface expression of AQP5, concentration- and time-dependently, whereas they did not affect the amount of AQP5 in whole cell lysates. The membrane water permeability of cells was also decreased by treatment with NO-donors. The decrease in cell surface AQP5 by NO was abolished by simultaneous treatment with methyl-beta-cyclodextrin, but not with ODQ, an inhibitor of the cGMP-dependent pathway. In addition, immunocytochemistry with anti-AQP5 indicated that NO changed AQP5 localization from the plasma membrane to the intracellular fraction. These data indicate that NO stimulates AQP5 internalization from the plasma membrane through a cGMP-independent mechanism, and decreases membrane water permeability.


Asunto(s)
Acuaporina 5/antagonistas & inhibidores , Permeabilidad de la Membrana Celular/fisiología , Pulmón/metabolismo , Proteínas de la Membrana/antagonistas & inhibidores , Óxido Nítrico/fisiología , Mucosa Respiratoria/metabolismo , Agua/metabolismo , Animales , Acuaporina 5/biosíntesis , Línea Celular , Pulmón/citología , Proteínas de la Membrana/metabolismo , Ratones , Mucosa Respiratoria/citología
13.
BMC Bioinformatics ; 7: 538, 2006 Dec 19.
Artículo en Inglés | MEDLINE | ID: mdl-17177995

RESUMEN

BACKGROUND: The small sample sizes often used for microarray experiments result in poor estimates of variance if each gene is considered independently. Yet accurately estimating variability of gene expression measurements in microarray experiments is essential for correctly identifying differentially expressed genes. Several recently developed methods for testing differential expression of genes utilize hierarchical Bayesian models to "pool" information from multiple genes. We have developed a statistical testing procedure that further improves upon current methods by incorporating the well-documented relationship between the absolute gene expression level and the variance of gene expression measurements into the general empirical Bayes framework. RESULTS: We present a novel Bayesian moderated-T, which we show to perform favorably in simulations, with two real, dual-channel microarray experiments and in two controlled single-channel experiments. In simulations, the new method achieved greater power while correctly estimating the true proportion of false positives, and in the analysis of two publicly-available "spike-in" experiments, the new method performed favorably compared to all tested alternatives. We also applied our method to two experimental datasets and discuss the additional biological insights as revealed by our method in contrast to the others. The R-source code for implementing our algorithm is freely available at http://eh3.uc.edu/ibmt. CONCLUSION: We use a Bayesian hierarchical normal model to define a novel Intensity-Based Moderated T-statistic (IBMT). The method is completely data-dependent using empirical Bayes philosophy to estimate hyperparameters, and thus does not require specification of any free parameters. IBMT has the strength of balancing two important factors in the analysis of microarray data: the degree of independence of variances relative to the degree of identity (i.e. t-tests vs. equal variance assumption), and the relationship between variance and signal intensity. When this variance-intensity relationship is weak or does not exist, IBMT reduces to a previously described moderated t-statistic. Furthermore, our method may be directly applied to any array platform and experimental design. Together, these properties show IBMT to be a valuable option in the analysis of virtually any microarray experiment.


Asunto(s)
Teorema de Bayes , Simulación por Computador , Perfilación de la Expresión Génica/métodos , Modelos Genéticos , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Animales , Acuaporina 5/antagonistas & inhibidores , Acuaporina 5/biosíntesis , Acuaporina 5/genética , Factores de Transcripción con Motivo Hélice-Asa-Hélice Básico , Células Cultivadas , Simulación por Computador/estadística & datos numéricos , Femenino , Factor 2 de Crecimiento de Fibroblastos/biosíntesis , Factor 2 de Crecimiento de Fibroblastos/genética , Factor 2 de Crecimiento de Fibroblastos/fisiología , Perfilación de la Expresión Génica/estadística & datos numéricos , Ratones , Ratones Noqueados , Níquel/toxicidad , Análisis de Secuencia por Matrices de Oligonucleótidos/estadística & datos numéricos , Receptores de Hidrocarburo de Aril/biosíntesis , Receptores de Hidrocarburo de Aril/deficiencia , Receptores de Hidrocarburo de Aril/fisiología , Transducción de Señal/genética , Factor de Crecimiento Transformador beta/fisiología
14.
J Membr Biol ; 210(2): 91-103, 2006 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-16868676

RESUMEN

Experiments were performed with the perfused rat submandibular gland in vitro to investigate the nature of the coupling between transported salt and water by varying the osmolarity of the source bath and observing the changes in secretory volume flow. Glands were submitted to hypertonic step changes by changing the saline perfusate to one containing different levels of sucrose. The flow rate responded by falling to a lower value, establishing a new steady-state flow. The rate changes did not correspond to those expected from a system in which fluid production is due to simple osmotic equilibration, but were much larger. The changes were fitted to a model in which fluid production is largely paracellular, the rate of which is controlled by an osmosensor system in the basal membrane. The same experiments were done with glands from rats that had been bred to have very low levels of AQP5 (the principal aquaporin of the salivary acinar cell) in which little AQP5 is expressed at the basal membrane. In these rats, salivary secretion rates after hypertonic challenges were small and best modelled by simple osmotic equilibration. In rats which had intermediate AQP5 levels the changes in flow rate were similar to those of normal rats although their AQP5 levels were reduced.Finally, perfused normal glands were subject to retrograde ductal injection of salines containing different levels of Hg(2+) ions (0, 10 and 100 microM: ) which would act as inhibitors of AQP5 at the apical acinar membrane. The overall flow rates were progressively diminished with rising Hg(2+) concentration, but after hypertonic challenge the changes in flow rates were unchanged and similar to those of normal rats. All these results are difficult to explain by a cellular osmotic model but can be explained by a model in which paracellular flow is controlled by an osmosensor (presumably AQP5) present on the basal membrane.


Asunto(s)
Acuaporina 5/metabolismo , Modelos Biológicos , Salivación/fisiología , Glándula Submandibular/fisiología , Animales , Acuaporina 5/antagonistas & inhibidores , Transporte Biológico/efectos de los fármacos , Transporte Biológico/fisiología , Permeabilidad de la Membrana Celular/efectos de los fármacos , Permeabilidad de la Membrana Celular/fisiología , Mercurio/farmacología , Técnicas de Cultivo de Órganos , Concentración Osmolar , Perfusión , Ratas , Ratas Sprague-Dawley , Salivación/efectos de los fármacos
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