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1.
BMC Plant Biol ; 24(1): 855, 2024 Sep 12.
Artículo en Inglés | MEDLINE | ID: mdl-39266960

RESUMEN

Management of molasses-based wastewater generated in yeast and sugar industries is a major environmental concern due to its high chemical oxygen demand and other recalcitrant substances. Several strategies have been used to reduce the inland discharge of wastewater but the results are not satisfactory due to high operating cost. However, reuse of molasses-based wastewater irrigation in agriculture has been a major interest nowadays to reduce the freshwater consumption. Thus, it is crucial to monitor the impacts of molasses-based waste water irrigation on growth, metabolism, yield and nutritional quality of crops for safer consumer's health. In present study, carrot seeds of a local cultivar (T-29) were germinated on filter paper in Petri dishes under controlled conditions. The germinated seeds were then transplanted into pots and irrigated with three different treatments normal water (T0), diluted molasses-based wastewater (T1), and untreated molasses-based wastewater (T2), in six replicates. Results revealed that carrot irrigated with untreated molasses-based waste water had exhibited significant reductions in growth, yield, physiology, metabolism, and nutritional contents. Additionally, accumulation of Cd and Pb contents in carrot roots irrigated with untreated molasses-based waste water exceed the permissible limits suggested by WHO and their consumption may cause health risks. While, diluted molasses-based waste water irrigation positively enhanced the growth, yield of carrot plants without affecting the nutritional quality. This strategy is cost effective, appeared as most appropriate alternative mean to reduce the freshwater consumption in water deficit regions of the world.


Asunto(s)
Riego Agrícola , Daucus carota , Melaza , Aguas Residuales , Daucus carota/crecimiento & desarrollo , Daucus carota/metabolismo , Aguas Residuales/química , Riego Agrícola/métodos , Valor Nutritivo
2.
Chemosphere ; 363: 142783, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38972459

RESUMEN

Previous studies have shown that larvae of the yellow mealworm, Tenebrio molitor L. (Coleoptera: Tenebrionidae), need a source of moisture to grow and perform well. Currently, much research has been oriented towards the effect of dry feed on larval growth and performance. The effect of different wet feeds as moisture source on the performance traits of T. molitor larvae has not been thoroughly investigated yet. This study aims to investigate in laboratory trials the effect of various gelling agents (agar, carrageenans, guar gum, xanthan gum, sodium alginate, modified starch, and pectin) on the growth and performance of T. molitor larvae. A number of 50 newly emerged larvae obtained from the rearings of the LEAZ were inserted in plastic vials together with 4 g of wheat bran as dry feed. Additionally, 1 g of gelling agents was provided 3 times per week as moisture sources. Carrot slices served as control. Larval survival and weight were recorded weekly until the appearance of the first pupa. Dry feed was replenished when depleted. Our data showed that gelling agents efficiently supported the growth of T. molitor larvae, in terms of larval survival and weight, as well as feed utilization expressed as FCR. Interestingly, carrageenans seem to be the most appropriate gelling agent for T. molitor larvae rearing as it can enhance their weight and is also able to reduce their development time and their specific growth rate.


Asunto(s)
Daucus carota , Larva , Tenebrio , Animales , Larva/crecimiento & desarrollo , Tenebrio/crecimiento & desarrollo , Daucus carota/crecimiento & desarrollo , Daucus carota/química , Alimentación Animal , Gomas de Plantas/química , Geles , Carragenina/química , Galactanos/química , Mananos , Polisacáridos Bacterianos/química , Alginatos/química , Agar/química
3.
BMC Plant Biol ; 24(1): 606, 2024 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-38926658

RESUMEN

Early season carrot (Daucus carota) production is being practiced in Punjab, Pakistan to meet the market demand but high temperature hampers the seed germination and seedling establishment which cause marked yield reduction. Seed priming with potassium nitrate breaks the seed dormancy and improves the seed germination and seedling growth potential but effects vary among the species and ecological conditions. The mechanism of KNO3 priming in high temperature stress tolerance is poorly understood yet. Thus, present study aimed to evaluate high temperature stress tolerance potential of carrot seeds primed with potassium nitrate and impacts on growth, physiological, and antioxidant defense systems. Carrot seeds of a local cultivar (T-29) were primed with various concentration of KNO3 (T0: unprimed (negative control), T1: hydroprimed (positive control), T2: 50 mM, T3:100mM, T4: 150 mM, T5: 200 mM, T6: 250 mM and T7: 300 mM) for 12 h each in darkness at 20 ± 2℃. Seed priming with 50 mM of KNO3 significantly enhanced the seed germination (36%), seedling growth (28%) with maximum seedling vigor (55%) and also exhibited 16.75% more carrot root biomass under high temperature stress as compared to respective control. Moreover, enzymatic activities including peroxidase, catalase, superoxidase dismutase, total phenolic contents, total antioxidants contents and physiological responses of plants were also improved in response to seed priming under high temperature stress. By increasing the level of KNO3, seed germination, growth and root biomass were reduced. These findings suggest that seed priming with 50 mM of KNO3 can be an effective strategy to improve germination, growth and yield of carrot cultivar (T-29) under high temperature stress in early cropping. This study also proposes that KNO3 may induces the stress memory by heritable modulations in chromosomal structure and methylation and acetylation of histones that may upregulate the hormonal and antioxidant activities to enhance the stress tolerance in plants.


Asunto(s)
Antioxidantes , Daucus carota , Germinación , Nitratos , Compuestos de Potasio , Plantones , Semillas , Antioxidantes/metabolismo , Plantones/crecimiento & desarrollo , Plantones/efectos de los fármacos , Plantones/fisiología , Nitratos/metabolismo , Nitratos/farmacología , Semillas/efectos de los fármacos , Semillas/crecimiento & desarrollo , Semillas/fisiología , Daucus carota/crecimiento & desarrollo , Daucus carota/efectos de los fármacos , Daucus carota/fisiología , Compuestos de Potasio/farmacología , Germinación/efectos de los fármacos , Calor
4.
PLoS One ; 19(5): e0302149, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38691526

RESUMEN

Future colonists on Mars will need to produce fresh food locally to acquire key nutrients lost in food dehydration, the primary technique for sending food to space. In this study we aimed to test the viability and prospect of applying an intercropping system as a method for soil-based food production in Martian colonies. This novel approach to Martian agriculture adds valuable insight into how we can optimise resource use and enhance colony self-sustainability, since Martian colonies will operate under very limited space, energy, and Earth supplies. A likely early Martian agricultural setting was simulated using small pots, a controlled greenhouse environment, and species compliant with space mission requirements. Pea (Pisum sativum), carrot (Daucus carota) and tomato (Solanum lycopersicum) were grown in three soil types ("MMS-1" Mars regolith simulant, potting soil and sand), planted either mixed (intercropping) or separate (monocropping). Rhizobia bacteria (Rhizobium leguminosarum) were added as the pea symbiont for Nitrogen-fixing. Plant performance was measured as above-ground biomass (g), yield (g), harvest index (%), and Nitrogen/Phosphorus/Potassium content in yield (g/kg). The overall intercropping system performance was calculated as total relative yield (RYT). Intercropping had clear effects on plant performance in Mars regolith, being beneficial for tomato but mostly detrimental for pea and carrot, ultimately giving an overall yield disadvantage compared to monocropping (RYT = 0.93). This effect likely resulted from the observed absence of Rhizobia nodulation in Mars regolith, negating Nitrogen-fixation and preventing intercropped plants from leveraging their complementarity. Adverse regolith conditions-high pH, elevated compactness and nutrient deficiencies-presumably restricted Rhizobia survival/nodulation. In sand, where more favourable soil conditions promoted effective nodulation, intercropping significantly outperformed monocropping (RYT = 1.32). Given this, we suggest that with simple regolith improvements, enhancing conditions for nodulation, intercropping shows promise as a method for optimising food production in Martian colonies. Specific regolith ameliorations are proposed for future research.


Asunto(s)
Marte , Suelo , Solanum lycopersicum , Solanum lycopersicum/crecimiento & desarrollo , Suelo/química , Daucus carota/crecimiento & desarrollo , Agricultura/métodos , Pisum sativum/crecimiento & desarrollo , Biomasa , Fijación del Nitrógeno , Nitrógeno/metabolismo , Vuelo Espacial
5.
Exp Parasitol ; 230: 108176, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-34740586

RESUMEN

Foliar spray of silicon dioxide (SiO2 NPs), zinc oxide (ZnO NPs) and titanium dioxide (TiO2 NPs) nanoparticles were used for the management of Meloidogyne incognita, Alternaria dauci and Rhizoctonia solani disease complex of carrot. Foliar spray of SiO2 NPs/ZnO NPs or TiO2 NPs increased plant growth attributes, chlorophyll and carotenoid of carrot. Foliar spray of 0.10 mg ml-1 SiO2 NPs caused the highest increase in plant growth, chlorophyll and carotenoid content of leaves followed by spray of 0.10 mg ml-1 ZnO NPs, 0.05 mg ml-1 SiO2 NPs, 0.05 mg ml-1 ZnO NPs, 0.10 mg ml-1 TiO2 NPs and 0.05 mg ml-1 TiO2 NPs. Use of SiO2 NPs caused a higher reduction in root galling, nematode multiplication and disease indices followed by ZnO NPs and TiO2 NPs. Two principal components analysis showed a total of 97.84% overall data variance in plants inoculated with single pathogen and 97.20% in plants inoculated with two or more pathogens. Therefore, foliar spray of SiO2 NPs appears interesting for the management of disease complex of carrot.


Asunto(s)
Alternaria/efectos de los fármacos , Daucus carota , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/parasitología , Rhizoctonia/efectos de los fármacos , Tylenchoidea/efectos de los fármacos , Aerosoles , Alternaria/crecimiento & desarrollo , Alternaria/patogenicidad , Animales , Carotenoides/análisis , Clorofila/análisis , Daucus carota/crecimiento & desarrollo , Daucus carota/microbiología , Daucus carota/parasitología , Microscopía Fluorescente , Nanopartículas/administración & dosificación , Hojas de la Planta/química , Análisis de Componente Principal , Rhizoctonia/crecimiento & desarrollo , Rhizoctonia/patogenicidad , Dióxido de Silicio/farmacología , Titanio/farmacología , Tylenchoidea/patogenicidad , Óxido de Zinc/farmacología
6.
Int J Mol Sci ; 22(19)2021 Oct 04.
Artículo en Inglés | MEDLINE | ID: mdl-34639081

RESUMEN

The aim of this work was to show an efficient, recombinant DNA-free, multiplex gene-editing method using gRNA:Cas9 ribonucleoprotein (RNP) complexes delivered directly to plant protoplasts. For this purpose, three RNPs were formed in the tube, their activity was confirmed by DNA cleavage in vitro, and then they were delivered to carrot protoplasts incubated with polyethylene glycol (PEG). After 48 h of incubation, single nucleotide deletions and insertions and small deletions at target DNA sites were identified by using fluorescent-PCR capillary electrophoresis and sequencing. When two or three RNPs were delivered simultaneously, long deletions of 33-152 nt between the gRNA target sites were generated. Such mutations occurred with an efficiency of up to 12%, while the overall editing effectiveness was very high, reaching 71%. This highly efficient multiplex gene-editing method, without the need for recombinant DNA technology, can be adapted to other plants for which protoplast culture methods have been established.


Asunto(s)
Sistemas CRISPR-Cas , Daucus carota/genética , Edición Génica , Ingeniería Genética/métodos , Polietilenglicoles/química , ARN Guía de Kinetoplastida , Ribonucleoproteínas/metabolismo , Daucus carota/crecimiento & desarrollo , Daucus carota/metabolismo , Genoma de Planta , Protoplastos , Ribonucleoproteínas/genética
7.
Front Immunol ; 12: 673692, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34305903

RESUMEN

In a perspective entitled 'From plant survival under severe stress to anti-viral human defense' we raised and justified the hypothesis that transcript level profiles of justified target genes established from in vitro somatic embryogenesis (SE) induction in plants as a reference compared to virus-induced profiles can identify differential virus signatures that link to harmful reprogramming. A standard profile of selected genes named 'ReprogVirus' was proposed for in vitro-scanning of early virus-induced reprogramming in critical primary infected cells/tissues as target trait. For data collection, the 'ReprogVirus platform' was initiated. This initiative aims to identify in a common effort across scientific boundaries critical virus footprints from diverse virus origins and variants as a basis for anti-viral strategy design. This approach is open for validation and extension. In the present study, we initiated validation by experimental transcriptome data available in public domain combined with advancing plant wet lab research. We compared plant-adapted transcriptomes according to 'RegroVirus' complemented by alternative oxidase (AOX) genes during de novo programming under SE-inducing conditions with in vitro corona virus-induced transcriptome profiles. This approach enabled identifying a major complex trait for early de novo programming during SARS-CoV-2 infection, called 'CoV-MAC-TED'. It consists of unbalanced ROS/RNS levels, which are connected to increased aerobic fermentation that links to alpha-tubulin-based cell restructuration and progression of cell cycle. We conclude that anti-viral/anti-SARS-CoV-2 strategies need to rigorously target 'CoV-MAC-TED' in primary infected nose and mouth cells through prophylactic and very early therapeutic strategies. We also discuss potential strategies in the view of the beneficial role of AOX for resilient behavior in plants. Furthermore, following the general observation that ROS/RNS equilibration/redox homeostasis is of utmost importance at the very beginning of viral infection, we highlight that 'de-stressing' disease and social handling should be seen as essential part of anti-viral/anti-SARS-CoV-2 strategies.


Asunto(s)
Reprogramación Celular/genética , Herencia Multifactorial/genética , SARS-CoV-2/patogenicidad , Acetilserotonina O-Metiltransferasa/genética , Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Ciclo Celular/genética , Bases de Datos Genéticas , Daucus carota/genética , Daucus carota/crecimiento & desarrollo , Fermentación , Perfilación de la Expresión Génica , Humanos , Proteínas Mitocondriales/genética , Proteínas Mitocondriales/metabolismo , Oxidorreductasas/genética , Oxidorreductasas/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Especies de Nitrógeno Reactivo/metabolismo , Especies Reactivas de Oxígeno/metabolismo , Tubulina (Proteína)/genética , Virus/patogenicidad
8.
Methods Mol Biol ; 2288: 113-126, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34270008

RESUMEN

Carrot is a vegetable of increasing economic importance. New hybrid cultivars are constantly required to meet the changing market needs. The application of anther culture significantly shortens the difficult and long-lasting breeding of carrot. We examined all the stages of the process of generating androgenic plants: induction of embryos in anther cultures, regeneration and acclimatization of produced plants, their evaluation, ploidy and homozygosity, and many other factors affecting their effectiveness. Every factor has been optimized by experimentally selecting the optimal level. As a result, a full protocol of producing homozygous plants using anther cultures was developed, which is presented in this chapter.


Asunto(s)
Daucus carota/crecimiento & desarrollo , Daucus carota/genética , Fitomejoramiento/métodos , Aclimatación/genética , Productos Agrícolas/genética , Productos Agrícolas/crecimiento & desarrollo , Productos Agrícolas/fisiología , Medios de Cultivo/química , Daucus carota/fisiología , Flores/genética , Flores/crecimiento & desarrollo , Heterocigoto , Homocigoto , Isoenzimas/análisis , Biología Molecular/métodos , Regeneración/genética , Técnicas de Cultivo de Tejidos
9.
Theor Appl Genet ; 134(10): 3351-3362, 2021 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-34282485

RESUMEN

KEY MESSAGE: The Or and CH genes are necessary for the accumulation of high amounts of ß-carotene and other carotenoid pigments in carrot roots, in addition to the Y and Y2 genes. Carrot taproot color results from the accumulation of various carotenoid and anthocyanin pigments. Recently, the Or gene was identified as a candidate gene associated with the accumulation of ß-carotene and other provitamin A carotenoids in roots. The specific molecular mechanisms involved with this process, as well as the interactions between Or and the other genes involved in this process are not well understood. In order to better characterize the effect that Or alleles have on conditioning the accumulation of carotenoids in roots, we analyzed an F3 family fixed homozygous recessive for y and y2, derived from a cross between an orange carrot and a white wild carrot, segregating for the two known Or alleles, which we name Orc and Orw. QTL mapping across three different environments revealed that the accumulation of several carotenoids was associated with the Orc allele, with consistent patterns across environments. A second QTL on chromosome 7, harboring a carotene hydroxylase gene homologous to Lut5 in Arabidopsis, was also associated with the accumulation of several carotenoids. Two alleles for this gene, which we name CHc and CHw, were discovered to be segregating in this population. Our study provides further evidence that Or and CH are likely involved with controlling the accumulation of ß-carotene and may be involved with modulating carotenoid flux in carrot, demonstrating that both were important domestication genes in carrot.


Asunto(s)
Carotenoides/metabolismo , Daucus carota/metabolismo , Regulación de la Expresión Génica de las Plantas , Oxigenasas de Función Mixta/metabolismo , Fenotipo , Proteínas de Plantas/metabolismo , Raíces de Plantas/metabolismo , Daucus carota/genética , Daucus carota/crecimiento & desarrollo , Oxigenasas de Función Mixta/genética , Pigmentación , Proteínas de Plantas/genética , Raíces de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo , Sitios de Carácter Cuantitativo
10.
Genes (Basel) ; 12(5)2021 05 18.
Artículo en Inglés | MEDLINE | ID: mdl-34069875

RESUMEN

The AT-hook motif containing nuclear localized (AHL) gene family, controlling various developmental processes, is conserved in land plants. They comprise Plant and Prokaryote Conserved (PPC) domain and one or two AT-hook motifs. DcAHLc1 has been proposed as a candidate gene governing the formation of the carrot storage root. We identified and in-silico characterized carrot AHL proteins, performed phylogenetic analyses, investigated their expression profiles and constructed gene coexpression networks. We found 47 AHL genes in carrot and grouped them into two clades, A and B, comprising 29 and 18 genes, respectively. Within Clade-A, we distinguished three subclades, one of them grouping noncanonical AHLs differing in their structure (two PPC domains) and/or cellular localization (not nucleus). Coexpression network analysis attributed AHLs expressed in carrot roots into four of the 72 clusters, some of them showing a large number of interactions. Determination of expression profiles of AHL genes in various tissues and samples provided basis to hypothesize on their possible roles in the development of the carrot storage root. We identified a group of rapidly evolving noncanonical AHLs, possibly differing functionally from typical AHLs, as suggested by their expression profiles and their predicted cellular localization. We pointed at several AHLs likely involved in the development of the carrot storage root.


Asunto(s)
Secuencias AT-Hook/genética , Daucus carota/crecimiento & desarrollo , Daucus carota/genética , Desarrollo de la Planta/genética , Proteínas de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo , Raíces de Plantas/genética , Regulación de la Expresión Génica de las Plantas/genética , Filogenia , Transcriptoma/genética
11.
PLoS One ; 16(4): e0249613, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33798246

RESUMEN

Renewed consumer demand motivates the nutritional and sensory quality improvement of fruits and vegetables. Specialized metabolites being largely involved in nutritional and sensory quality of carrot, a better knowledge of their phenotypic variability is required. A metabolomic approach was used to evaluate phenotypic plasticity level of carrot commercial varieties, over three years and a wide range of cropping environments spread over several geographical areas in France. Seven groups of metabolites have been quantified by HPLC or GC methods: sugars, carotenoids, terpenes, phenolic compounds, phenylpropanoids and polyacetylenes. A large variation in root metabolic profiles was observed, in relation with environment, variety and variety by environment interaction effects in decreasing order of importance. Our results show a clear diversity structuration based on metabolite content. Polyacetylenes, ß-pinene and α-carotene were identified mostly as relatively stable varietal markers, exhibiting static stability. Nevertheless, environment effect was substantial for a large part of carrot metabolic profile and various levels of phenotypic plasticity were observed depending on metabolites and varieties. A strong difference of environmental sensitivity between varieties was observed for several compounds, particularly myristicin, 6MM and D-germacrene, known to be involved in responses to biotic and abiotic stress. This work provides useful information about plasticity in the perspective of carrot breeding and production. A balance between constitutive content and environmental sensitivity for key metabolites should be reached for quality improvement in carrot and other vegetables.


Asunto(s)
Adaptación Fisiológica , Carotenoides/análisis , Daucus carota/metabolismo , Resistencia a la Enfermedad/inmunología , Metaboloma , Daucus carota/crecimiento & desarrollo , Daucus carota/inmunología
12.
J Environ Sci Health B ; 55(11): 990-1001, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32877275

RESUMEN

Application of municipal biosolids in agriculture present a concern with potential uptake and bioaccumulation of pharmaceutical compounds from biosolids into agronomic plants. We evaluated the efficacy of biochar as a soil amendment to minimize uptake of antimicrobial agents (ciprofloxacin, triclocarban, and triclosan) in lettuce (Lactuca sativa) and carrot (Daucus carota) plants. Biochar reduced the concentration of ciprofloxacin and triclocarban in lettuce leaves and resulted in a 67% reduction of triclosan in carrot roots. There was no substantial difference in pharmaceutical concentrations in carrot and lettuce plant matter at low (2.0 g kg-1 soil) and high (20.4 g kg-1 soil) rates of applied biochar. The co-amendment of biochar and biosolids increased soil pH and nutrient content which were positively correlated with an increase in lettuce shoot biomass. Our results demonstrate the potential efficacy of using walnut shell biochar as a sorbent for pharmaceutical contaminants in soil without negatively affecting plant growth.


Asunto(s)
Carbanilidas/farmacología , Carbón Orgánico , Ciprofloxacina/farmacología , Daucus carota/efectos de los fármacos , Lactuca/efectos de los fármacos , Triclosán/farmacocinética , Agricultura/métodos , Antiinfecciosos/farmacocinética , Biomasa , Biosólidos , Daucus carota/crecimiento & desarrollo , Daucus carota/metabolismo , Lactuca/crecimiento & desarrollo , Lactuca/metabolismo , Hojas de la Planta/química , Hojas de la Planta/efectos de los fármacos , Hojas de la Planta/metabolismo , Raíces de Plantas/química , Raíces de Plantas/efectos de los fármacos , Raíces de Plantas/metabolismo , Brotes de la Planta/efectos de los fármacos , Suelo/química , Contaminantes del Suelo/análisis , Contaminantes del Suelo/farmacocinética
13.
Sci Rep ; 10(1): 13685, 2020 08 13.
Artículo en Inglés | MEDLINE | ID: mdl-32792547

RESUMEN

Fungal endophytes can influence production and post-harvest challenges in carrot, though the identity of these microbes as well as factors affecting their composition have not yet been determined, which prevents growers from managing these organisms to improve crop performance. Consequently, we characterized the endophytic mycobiome in the taproots of three carrot genotypes that vary in resistance to two pathogens grown in a trial comparing organic and conventional crop management using Illumina sequencing of the internal transcribed spacer (ITS) gene. A total of 1,480 individual operational taxonomic units (OTUs) were identified. Most were consistent across samples, indicating that they are part of a core mycobiome, though crop management influenced richness and diversity, likely in response to differences in soil properties. There were also differences in individual OTUs among genotypes and the nematode resistant genotype was most responsive to management system indicating that it has greater control over its endophytic mycobiome, which could potentially play a role in resistance. Members of the Ascomycota were most dominant, though the exact function of most taxa remains unclear. Future studies aimed at overcoming difficulties associated with isolating fungal endophytes are needed to identify these microbes at the species level and elucidate their specific functional roles.


Asunto(s)
Daucus carota/crecimiento & desarrollo , Hongos/clasificación , Análisis de Secuencia de ADN/métodos , Agricultura , Daucus carota/genética , Daucus carota/microbiología , Endófitos , Hongos/genética , Genotipo , Secuenciación de Nucleótidos de Alto Rendimiento , Micobioma , Filogenia , Raíces de Plantas/microbiología
14.
Mol Genet Genomics ; 295(6): 1379-1392, 2020 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-32656704

RESUMEN

Carotenoids are terpenoid pigments synthesized by all photosynthetic and some non-photosynthetic organisms. In plants, these lipophilic compounds are involved in photosynthesis, photoprotection, and phytohormone synthesis. In plants, carotenoid biosynthesis is induced by several environmental factors such as light including photoreceptors, such as phytochromes (PHYs) and negatively regulated by phytochrome interacting factors (PIFs). Daucus carota (carrot) is one of the few plant species that synthesize and accumulate carotenoids in the storage root that grows in darkness. Contrary to other plants, light inhibits secondary root growth and carotenoid accumulation suggesting the existence of new mechanisms repressed by light that regulate both processes. To identify genes induced by dark and repressed by light that regulate carotenoid synthesis and carrot root development, in this work an RNA-Seq analysis was performed from dark- and light-grown carrot roots. Using this high-throughput sequencing methodology, a de novo transcriptome model with 63,164 contigs was obtained, from which 18,488 were differentially expressed (DEG) between the two experimental conditions. Interestingly, light-regulated genes are preferably expressed in dark-grown roots. Enrichment analysis of GO terms with DEGs genes, validation of the transcriptome model and DEG analysis through qPCR allow us to hypothesize that genes involved in photomorphogenesis and light perception such as PHYA, PHYB, PIF3, PAR1, CRY2, FYH3, FAR1 and COP1 participate in the synthesis of carotenoids and carrot storage root development.


Asunto(s)
Vías Biosintéticas/genética , Carotenoides/metabolismo , Biología Computacional/métodos , Daucus carota/genética , Daucus carota/metabolismo , Regulación de la Expresión Génica de las Plantas , Proteínas de Plantas/metabolismo , Daucus carota/crecimiento & desarrollo , Perfilación de la Expresión Génica , Pigmentación , Proteínas de Plantas/genética
15.
Int J Mol Sci ; 21(12)2020 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-32549408

RESUMEN

BACKGROUND: Diverse groups of carrot cultivars have been developed to meet consumer demands and industry needs. Varietal groups of the cultivated carrot are defined based on the shape of roots. However, little is known about the genetic basis of root shape determination. METHODS: Here, we used 307 carrot plants from 103 open-pollinated cultivars for a genome wide association study to identify genomic regions associated with the storage root morphology. RESULTS: A 180 kb-long region on carrot chromosome 1 explained 10% of the total observed phenotypic variance in the shoulder diameter. Within that region, DcDCAF1 and DcBTAF1 genes were proposed as candidates controlling secondary growth of the carrot storage root. Their expression profiles differed between the cultivated and the wild carrots, likely indicating that their elevated expression was required for the development of edible roots. They also showed higher expression at the secondary root growth stage in cultivars producing thick roots, as compared to those developing thin roots. CONCLUSIONS: We provided evidence for a likely involvement of DcDCAF1 and/or DcBTAF1 in the development of the carrot storage root and developed a genotyping assay facilitating the identification of variants in the region on carrot chromosome 1 associated with secondary growth of the carrot root.


Asunto(s)
Biología Computacional/métodos , Daucus carota/crecimiento & desarrollo , Proteínas de Plantas/genética , Mapeo Cromosómico , Minería de Datos , Bases de Datos Genéticas , Daucus carota/genética , Perfilación de la Expresión Génica , Regulación del Desarrollo de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Raíces de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo , Polimorfismo de Nucleótido Simple
16.
PLoS One ; 15(6): e0233783, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32497087

RESUMEN

Managing pests in carrot production is challenging. Endophytic microbes have been demonstrated to improve the health and productivity of many crops, but factors affecting endophyte dynamics in carrot is still not well understood. The goal of this study was to determine how crop management system and carrot genotype interact to affect the composition and potential of endophytes to mitigate disease caused by Alternaria dauci, an important carrot pathogen. Twenty-eight unique isolates were collected from the taproots of nine diverse genotypes of carrot grown in a long-term trial comparing organic and conventional management. Antagonistic activity was quantified using an in vitro assay, and potential for individual isolates to mitigate disease was evaluated in greenhouse trials using two carrot cultivars. Results confirm that carrot taproots are colonized by an abundant and diverse assortment of bacteria and fungi representing at least distinct 13 genera. Soils in the organic system had greater total organic matter, microbial biomass and activity than the conventional system and endophyte composition in taproots grown in this system were more abundant and diverse, and had greater antagonistic activity. Carrot genotype also affected endophyte abundance as well as potential for individual isolates to affect seed germination, seedling growth and tolerance to A. dauci. The benefits of endophytes on carrot growth were greatest when plants were subject to A. dauci stress, highlighting the importance of environmental conditions in the functional role of endophytes. Results of this study provide evidence that endophytes can play an important role in improving carrot performance and mediating resistance to A. dauci, and it may someday be possible to select for these beneficial plant-microbial relationships in carrot breeding programs. Implementing soil-building practices commonly used in organic farming systems has potential to promote these beneficial relationships and improve the health and productivity of carrot crops.


Asunto(s)
Alternaria/fisiología , Producción de Cultivos/métodos , Daucus carota/genética , Daucus carota/microbiología , Endófitos/fisiología , Genotipo , Enfermedades de las Plantas/microbiología , Protección de Cultivos/métodos , Daucus carota/crecimiento & desarrollo , Endófitos/aislamiento & purificación , Germinación , Suelo/química , Microbiología del Suelo
17.
DNA Cell Biol ; 39(5): 816-827, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-32175765

RESUMEN

Carrot is an annual or biennial herbaceous plant of the Apiaceae family. Carrot is an important vegetable, and its fresh taproot, which contains rich nutrients, is the main edible part. In the life cycle of carrot, NAC family transcription factors (TFs) are involved in almost all physiological processes. The function of NAC TFs in carrot remains unclear. In this study, 73 NAC family TF members in carrot were identified and characterized using transcriptome and genome databases. These members were divided into 14 subfamilies. Multiple sequence alignment was performed, and the conserved domains, common motifs, phylogenetic tree, and interaction network of DcNAC proteins were predicted and analyzed. Results showed that the same group of NAC proteins of carrot had high similarity. Eight DcNAC genes were selected to detect their expression profiles under abiotic stress treatments. The expression levels of the selected DcNAC genes significantly increased under treatments with low temperature, high temperature, drought, and salt stress. Results provide potentially useful information for further analysis of the roles of DcNAC transcription factors in carrot.


Asunto(s)
Daucus carota/genética , Daucus carota/fisiología , Perfilación de la Expresión Génica , Genómica , Proteínas de Plantas/genética , Estrés Fisiológico/genética , Factores de Transcripción/genética , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Frío/efectos adversos , Secuencia Conservada , Daucus carota/efectos de los fármacos , Daucus carota/crecimiento & desarrollo , Evolución Molecular , Filogenia , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Raíces de Plantas/crecimiento & desarrollo , Sales (Química)/farmacología , Factores de Transcripción/química , Factores de Transcripción/metabolismo
18.
Nutrients ; 12(2)2020 Jan 27.
Artículo en Inglés | MEDLINE | ID: mdl-32012793

RESUMEN

Carrots' genotype and growing conditions influence their potential properties to fight against cardiovascular and metabolic diseases. The present study evaluated the influence of carrot genotypes contrasted by root color (Bolero, Presto, Karotan, Deep Purple, Kintoki and Blanche des Vosges) growing under standard, water-restricted, biotic stress (Alternaria dauci inoculation), and combined stress conditions (water restriction and A.dauci inoculation). The effect of carrots' polyphenol and carotenoid content was assessed on endothelial and smooth muscle cells, hepatocytes, adipocytes and macrophages functions (oxidative stress, apoptosis, proliferation, lipid accumulation and inflammation). Independently of varieties or growing conditions, all carrot extracts affected vascular cells' oxidative stress and apoptosis, and metabolic cells' oxidative stress and lipid accumulation. Three clusters were revealed and displayed beneficial properties mostly for adipocytes function, smooth muscle cells and hepatocytes, and endothelial cells and hepatocytes, respectively. Karotan and Presto varieties exhibited endothelial tropism while Blanche des Vosges targeted adipocytes. Carrots under biotic stress are more efficient in inducing beneficial effects, with the Bolero variety being the most effective. However, extracts from carrots which grew under combined stress conditions had limited beneficial effects. This report underscores the use of certain carrot extracts as potential effective nutraceutical supplements for metabolic diseases.


Asunto(s)
Proliferación Celular/efectos de los fármacos , Daucus carota/genética , Genotipo , Pigmentación , Extractos Vegetales/farmacología , Raíces de Plantas/química , Animales , Células Cultivadas , Daucus carota/crecimiento & desarrollo , Daucus carota/metabolismo , Humanos , Ratones , Extractos Vegetales/química
19.
Plant Sci ; 291: 110327, 2020 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-31928663

RESUMEN

Daucus carota is a biennale crop that develops an edible storage root. Orange carrots, the most consumed cultivar worldwide, accumulate high levels of ß-carotene and α-carotene in the storage root during secondary growth. Genes involved in ß-carotene synthesis have been identified in carrots and unlike most species, D. carota has two ζ-carotene desaturase genes, named ZDS1 and ZDS2, that share 91.3 % identity in their coding regions. ZDS1 expression falls during leaf, but not root development, while ZDS2 is induced in leaves and storage roots of a mature plant. In this work, by means of post-transcriptional gene silencing, we determined that ZDS1 is essential for initial carrot development. The suppression of the expression of this gene by RNAi triggered a reduction in the transcript levels of ZDS2 and PSY2 genes, with a concomitant decrease in the carotenoid content in both, leaves and storage roots. On the contrary, transgenic lines with reduced ZDS2 transcript abundance maintain the same levels of expression of endogenous ZDS1 and PSY2 and carotenoid profile as wild-type plants. The simultaneous silencing of ZDS1 and ZDS2 resulted in lines with a negligible leaf and root development, as well as significantly lower endogenous PSY2 expression. Further functional analyses, such as a plastidial subcellular localization of ZDS1:GFP and the increment in carotenoid content in transgenic tobacco plants overexpressing the carrot ZDS1, confirmed that ZDS1 codifies for a functional enzyme. Overall, these results lead us to propose that the main ζ-carotene desaturase activity in carrot is encoded by the ZDS1 gene and ZDS2 gene has a complementary and non essential role.


Asunto(s)
Carotenoides/metabolismo , Daucus carota/genética , Oxidorreductasas/genética , Proteínas de Plantas/genética , Daucus carota/crecimiento & desarrollo , Daucus carota/metabolismo , Oxidorreductasas/metabolismo , Proteínas de Plantas/metabolismo
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