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1.
Genes (Basel) ; 12(11)2021 10 28.
Artículo en Inglés | MEDLINE | ID: mdl-34828327

RESUMEN

Strigiformes are affected by a substantial decline mainly caused by habitat loss and destruction, poaching, and trapping. Moreover, the increasing trend in bird trade and the growing interest in wild-caught rather than captive-bred birds are expected to encourage illegal trade. The biomolecular investigation represents a valuable tool to track illegal trade and to explore the genetic variability to preserving biodiversity. Microsatellite loci (STRs) are the most used markers to study genetic variability. Despite the availability of species-specific microsatellite loci in Strigiformes, a unique panel permitting the description of the genetic variability across species has not been identified yet. We tested 32 highly polymorphic microsatellite markers to evaluate the reliability of a unique microsatellite panel in different species of Strigiformes and its use for conservation and forensic purposes. We included in the study 84 individuals belonging to 28 parental groups and 11 species of Strigiformes. After screening polymorphic microsatellite loci, the description of genetic variability, and the kinship assessment, we characterized a final panel of 12 microsatellite loci able to identify individuals in 9 Strigiformes species. This STR panel might support the authorities in the forensic investigation for suspected smugglers and false parental claims; moreover, it can be useful to evaluate relatedness among individuals in captive-bred populations and to implement research projects finalized to the description of the genetic variability in wild populations.


Asunto(s)
Genética Forense/métodos , Repeticiones de Microsatélite , Estrigiformes/clasificación , Animales , Animales Salvajes/clasificación , Animales Salvajes/genética , Biodiversidad , Conservación de los Recursos Naturales , Especificidad de la Especie , Estrigiformes/genética
2.
Zootaxa ; 4949(3): zootaxa.4949.3.1, 2021 Mar 26.
Artículo en Inglés | MEDLINE | ID: mdl-33903329

RESUMEN

Megascops is the most species-rich owl genus in the New World, with 21 species currently recognized. Phylogenetic relationships within this genus are notoriously difficult to establish due to the considerable plumage similarity among species and polymorphism within species. Previous studies have suggested that the widespread lowland Amazonian M. watsonii might include more than one species, and that the Atlantic Forest endemic M. atricapilla is closely related to the M. watsonii complex, but these relationships are as yet poorly understood. A recently published phylogeny of Megascops demonstrated that M. watsonii is paraphyletic with respect to M. atricapilla and that genetic divergences among some populations of M. watsonii are equal to or surpass the degree of differentiation between some M. watsonii and M. atricapilla. To shed light on the taxonomic status of these species and populations within them, we conducted a multi-character study based on molecular, morphological, and vocal characters. We sequenced three mitochondrial (cytb, CO1 and ND2) and three nuclear genes (BF5, CHD and MUSK) for 49 specimens, covering most of the geographic ranges of M. watsonii and M. atricapilla, and used these sequences to estimate phylogenies under alternative Bayesian, Maximum Likelihood, and multilocus coalescent species tree approaches. We studied 252 specimens and vocal parameters from 83 recordings belonging to 65 individuals, distributed throughout the ranges of M. watsonii and M. atricapilla. We used Discriminant Function Analysis (DFA) to analyze both morphometric and vocal data, and a pairwise diagnostic test to evaluate the significance of vocal differences between distinct genetic lineages. Phylogenetic analyses consistently recovered six statistically well-supported clades whose relationships are not entirely in agreement with currently recognized species limits in M. watsonii and M. atricapilla. Morphometric analyses did not detect significant differences among clades. High plumage variation among individuals within clades was usually associated with the presence of two or more color morphs. By contrast, vocal analyses detected significant differentiation among some clades but considerable overlap among others, with some lineages (particularly the most widespread one) exhibiting significant regional variation. The combined results allow for a redefinition of species limits in both M. watsonii and M. atricapilla, with the recognition of four additional species, two of which we describe here as new. We estimated most cladogenesis in the Megascops atricapilla-M. watsonii complex as having taken place during the Plio-Pleistocene, with the development of the modern Amazonian and São Francisco drainages and the expansion and retraction of forest biomes during interglacial and glacial periods as likely events accounting for this relatively recent burst of diversification.


Asunto(s)
Estrigiformes , Animales , Teorema de Bayes , ADN Mitocondrial , Variación Genética , Passeriformes/genética , Filogenia , Filogeografía , Estrigiformes/clasificación , Estrigiformes/fisiología
3.
Genome Biol Evol ; 13(5)2021 05 07.
Artículo en Inglés | MEDLINE | ID: mdl-33764456

RESUMEN

Spotted owls (SOs, Strix occidentalis) are a flagship species inhabiting old-growth forests in western North America. In recent decades, their populations have declined due to ongoing reductions in suitable habitat caused by logging, wildfires, and competition with the congeneric barred owl (BO, Strix varia). The northern spotted owl (S. o. caurina) has been listed as "threatened" under the Endangered Species Act since 1990. Here, we use an updated SO genome assembly along with 51 high-coverage whole-genome sequences to examine population structure, hybridization, and recent changes in population size in SO and BO. We found that potential hybrids identified from intermediate plumage morphology were a mixture of pure BO, F1 hybrids, and F1 × BO backcrosses. Also, although SO underwent a population bottleneck around the time of the Pleistocene-Holocene transition, their population sizes rebounded and show no evidence of any historical (i.e., 100-10,000 years ago) population decline. This suggests that the current decrease in SO abundance is due to events in the past century. Finally, we estimate that western and eastern BOs have been genetically separated for thousands of years, instead of the previously assumed recent (i.e., <150 years) divergence. Although this result is surprising, it is unclear where the ancestors of western BO lived after the separation. In particular, although BO may have colonized western North America much earlier than the first recorded observations, it is also possible that the estimated divergence time reflects unsampled BO population structure within central or eastern North America.


Asunto(s)
Variación Genética , Estrigiformes/clasificación , Estrigiformes/genética , Animales , Quimera , Plumas , Femenino , Genética de Población , Genoma , Masculino , Fenotipo , Dinámica Poblacional , Estados Unidos
4.
PLoS One ; 15(5): e0231163, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32369484

RESUMEN

Examination of genetic polymorphisms in outbred wild-living species provides insights into the evolution of complex systems. In higher vertebrates, the proopiomelanocortin (POMC) precursor gives rise to α-, ß-, and γ-melanocyte-stimulating hormones (MSH), which are involved in numerous physiological aspects. Genetic defects in POMC are linked to metabolic disorders in humans and animals. In the present study, we undertook an evolutionary genetic approach complemented with biochemistry to investigate the functional consequences of genetic polymorphisms in the POMC system of free-living outbred barn owl species (family Tytonidae) at the molecular level. Our phylogenetic studies revealed a striking correlation between a loss-of-function H9P mutation in the ß-MSH receptor-binding motif and an extension of a poly-serine stretch in γ3-MSH to ≥7 residues that arose in the barn owl group 6-8 MYA ago. We found that extension of the poly-serine stretches in the γ-MSH locus affects POMC precursor processing, increasing γ3-MSH production at the expense of γ2-MSH and resulting in an overall reduction of γ-MSH signaling, which may be part of a negative feedback mechanism. Extension of the γ3-MSH poly-serine stretches ≥7 further markedly increases peptide hormone stability in plasma, which is conserved in humans, and is likely relevant to its endocrine function. In sum, our phylogenetic analysis of POMC in wild living owls uncovered a H9P ß-MSH mutation subsequent to serine extension in γ3-MSH to 7 residues, which was then followed by further serine extension. The linked MSH mutations highlight the genetic plasticity enabled by the modular design of the POMC gene.


Asunto(s)
Mutación con Pérdida de Función , Repeticiones de Microsatélite , Proopiomelanocortina/genética , Proopiomelanocortina/metabolismo , Estrigiformes/clasificación , Secuencias de Aminoácidos , Animales , Animales no Consanguíneos , Sitios de Unión , Evolución Molecular , Retroalimentación Fisiológica , Técnicas de Genotipaje/veterinaria , Filogenia , Proopiomelanocortina/química , Estabilidad Proteica , Transducción de Señal , Estrigiformes/genética , Estrigiformes/metabolismo , Distribución Tisular
5.
Int J Biol Macromol ; 151: 924-931, 2020 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-32097733

RESUMEN

New advances in molecular approaches for DNA analysis have enhanced our understanding of the phylogenetic relationship of birds. The Little Owl (Athene noctua) is of great significance for the integrated management of forest diseases and control of regional pests. Here, we sequenced and annotated the 17,772 bp complete mitogenome of A. noctua. The mitogenome encoded 37 typical mitochondrial genes: 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA, and one non-coding control region (D-loop). The organization and location of genes in the A. noctua mitogenome were consistent with those reported for other Strigidae birds. Phylogenetic relationships based on Bayesian inference and Maximum likelihood methods showed that A. noctua has close relationships with Athene brama and Glaucidium cuculoides, confirming that A. noctua belongs to the Strigidae family. The phylogenetic relationships among seven genera of the Strigidae family used in this study were: Ninox and the other six genera were far apart, Otus and the clade ((Bubo + Strix) + Asio) were clustered into one branch, and Athene and Glaucidium were clustered into one branch. This phylogenetic classification is consistent with prior taxonomic studies on the Strigidae family. Our results provide new mitogenomic data to support further phylogenetic and taxonomic studies of Strigidae.


Asunto(s)
Genoma Mitocondrial , Genómica , Filogenia , Estrigiformes/clasificación , Estrigiformes/genética , Animales , Composición de Base , Biología Computacional/métodos , Genes Mitocondriales , Genómica/métodos , Anotación de Secuencia Molecular , ARN de Transferencia/química , ARN de Transferencia/genética
6.
Gene ; 674: 8-14, 2018 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-29940272

RESUMEN

The bird mitogenome is generally considered to have a conservative genome size, consistent gene content, and similar gene order. As more mitogenomes are sequenced, mitochondrial (mt) gene rearrangements have been frequently identified among diverse birds. Within two genera (Bubo and Strix) of typical owls (Strigidae, Strigiformes), the rearrangement of the mt gene has been a subject of debate. In the current study, we first sequenced the whole mitogenomes of S. uralensis and B. scandiaca and resequenced the entire mitogenome of B. bubo. By combining our data with previously sequenced mitogenomes in Strigidae, we examined the mt gene rearrangements in the family and attempted to reconstruct the evolutionary progression of these rearrangements. The mitogenomes were then used to review the phylogenies of Strigidae. Most mitogenomes exhibited the ancestral gene order (A) in Strigidae. The ancestral gene order in the previously published mitogenome of B. bubo was found to be incorrect. We determined the mt gene order (the duplicate tRNAThr-CR, B) and discovered two additional mt gene orders (the duplicate tRNAGlu-L-CR and CR, C and D) in the Bubo and Strix genera. Gene order B was likely derived from A by a tandem duplication of the region spanning from tRNAThr to CR. The other two modified gene orders, C and D, were likely derived from B by further degenerations or deletions of one copy of specific duplicated genes. We also preliminarily reconstructed the evolutionary progression of mt gene rearrangements and discussed maintenance of the duplicated CR in the genera. Additionally, the phylogenetic trees based on the mitogenomes supported the division of Strigidae into three subfamilies: Ninoxinae + (Surniinae + Striginae). Within the Striginae clade, the four genera formed a phylogenetic relationship: Otus + (Asio + (Bubo + Strix)). This suggests that Otus firstly diverges in their evolutionary history, and Bubo and Strix show a close relationship. B. bubo, B. blakistoni and B. scandiaca form a clade should be considered members of the same genus. The well-supported topology obtained in our Bayesian inference (BI) and maximum likelihood (ML) analyses of Strigid mitogenomes suggests that these genomes are informative for constructing phylogenetic relationships.


Asunto(s)
Genes Mitocondriales , Estrigiformes/genética , Animales , Evolución Molecular , Orden Génico , Genoma Mitocondrial , Filogenia , Estrigiformes/clasificación
7.
Mol Phylogenet Evol ; 125: 127-137, 2018 08.
Artículo en Inglés | MEDLINE | ID: mdl-29535030

RESUMEN

The owl family Tytonidae comprises two genera: Phodilus, limited to the forests of central Africa and South-East Asia, and the ubiquitous Tyto. The genus Tyto is majorly represented by the cosmopolitan Common Barn Owl group, with more than 30 subspecies worldwide. Discrete differences in body size and plumage colouration have led to the classification of this family into many species and subspecies, but the taxonomic status and phylogenetic relationships between taxa remain unclear, and in some groups controversial. Although several previous studies attempted to resolve this problem, they have been limited in their taxonomic and geographical coverage, or have relied on restricted molecular evidence and low sample sizes. Based on the most comprehensive sampling to date (16 out of 17 Tyto species, and one out of three Phodilus species), a multi-locus approach using seven mitochondrial and two nuclear markers, and taking advantage of field data and museum collections available worldwide, our main questions in this study were: (1) what are the phylogenetic relationships and classification status of the whole family; (2) when and where did the most important speciation events occur? We confirm that the Common Barn Owl, Tyto alba is divided into three main evolutionary units: the American Barn Owl, T. furcata; the Western Barn Owl, T. alba; and the Eastern Barn Owl, T. javanica, and suggest a Late Miocene (ca. 6 mya) Australasian and African origin of the group. Our results are supported by fossil age information, given that the most recent common ancestor between the Tytonidae genera Phodilus and Tyto was probably from the Oligocene (ca. 28 mya) of Australasia. We finally reveal six major Pleistocene radiations of Tyto, all resulting in wide-range distributions.


Asunto(s)
Fósiles , Filogenia , Estrigiformes/clasificación , Animales , Australasia , Teorema de Bayes , Geografía , Funciones de Verosimilitud , Estrigiformes/genética , Factores de Tiempo
8.
PLoS One ; 13(2): e0192359, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29401484

RESUMEN

Range-restricted species generally have specific niche requirements and may often have unique evolutionary histories. Unfortunately, many of these species severely lack basic research, resulting in poor conservation strategies. The phylogenetic relationship of the Critically Endangered Forest Owlet Heteroglaux blewitti has been the subject of a century-old debate. The current classifications based on non-phylogenetic comparisons of morphology place the small owls of Asia into three genera, namely, Athene, Glaucidium, and Heteroglaux. Based on morphological and anatomical data, H. blewitti has been alternatively hypothesized to belong within Athene, Glaucidium, or its own monotypic genus Heteroglaux. To test these competing hypotheses, we sequenced six loci (~4300 bp data) and performed phylogenetic analyses of owlets. Mitochondrial and nuclear trees were not congruent in their placement of H. blewitti. However, both mitochondrial and nuclear combined datasets showed strong statistical support with high maximum likelihood bootstrap (>/ = 90) and Bayesian posterior probability values (>/ = 0.98) for H. blewitti being nested in the currently recognized Athene group, but not sister to Indian A. brama. The divergence of H. blewitti from its sister taxa was between 4.3 and 5.7 Ma coinciding with a period of drastic climatic changes in the Indian subcontinent. This study presented the first genetic analysis of H. blewitti, a Critically Endangered species, and addressed the long debate on the relationships of the Athene-Heteroglaux-Glaucidium complex. We recommend further studies with more data and complete taxon sampling to understand the biogeography of Indian Athene species.


Asunto(s)
Especies en Peligro de Extinción , Estrigiformes , Animales , Teorema de Bayes , Conservación de los Recursos Naturales , Fósiles , Filogenia , Estrigiformes/clasificación
9.
Mol Phylogenet Evol ; 118: 47-53, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-28943375

RESUMEN

Carotenoids have important roles in bird behavior, including pigmentation for sexual signaling and improving color vision via retinal oil droplets. Yellow carotenoids are diet-derived, but red carotenoids (ketocarotenoids) are typically synthesized from yellow precursors via a carotenoid ketolase. Recent research on passerines has provided evidence that a cytochrome p450 enzyme, CYP2J19, is responsible for this reaction, though it is unclear if this function is phylogenetically restricted. Here I provide evidence that CYP2J19 is the carotenoid ketolase common to Aves using the genomes of 65 birds and the retinal transcriptomes of 15 avian taxa. CYP2J19 is functionally intact and robustly transcribed in all taxa except for several species adapted to foraging in dim light conditions. Two penguins, an owl and a kiwi show evidence of genetic lesions and relaxed selection in their genomic copy of CYP2J19, and six owls show evidence of marked reduction in CYP2J19 retinal transcription compared to nine diurnal avian taxa. Furthermore, one of the owls appears to transcribe a CYP2J19 pseudogene. Notably, none of these taxa are known to use red carotenoids for sexual signaling and several species of owls and penguins represent the only birds known to completely lack red retinal oil droplets. The remaining avian taxa belong to groups known to possess red oil droplets, are known or expected to deposit red carotenoids in skin and/or plumage, and/or frequently forage in bright light. The loss and reduced expression of CYP2J19 is likely an adaptation to maximize retinal sensitivity, given that oil droplets reduce the amount of light available to the retina.


Asunto(s)
Aves/clasificación , Carotenoides/biosíntesis , Sistema Enzimático del Citocromo P-450/genética , Spheniscidae/clasificación , Estrigiformes/clasificación , Animales , Secuencia de Bases , Aves/genética , Sistema Enzimático del Citocromo P-450/clasificación , Bases de Datos Genéticas , Evolución Molecular , Filogenia , Retina/metabolismo , Spheniscidae/metabolismo , Estrigiformes/metabolismo
10.
Genome Biol Evol ; 9(10): 2522-2545, 2017 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-28992302

RESUMEN

We report here the assembly of a northern spotted owl (Strix occidentalis caurina) genome. We generated Illumina paired-end sequence data at 90× coverage using nine libraries with insert lengths ranging from ∼250 to 9,600 nt and read lengths from 100 to 375 nt. The genome assembly is comprised of 8,108 scaffolds totaling 1.26 × 109 nt in length with an N50 length of 3.98 × 106 nt. We calculated the genome-wide fixation index (FST) of S. o. caurina with the closely related barred owl (Strix varia) as 0.819. We examined 19 genes that encode proteins with light-dependent functions in our genome assembly as well as in that of the barn owl (Tyto alba). We present genomic evidence for loss of three of these in S. o. caurina and four in T. alba. We suggest that most light-associated gene functions have been maintained in owls and their loss has not proceeded to the same extent as in other dim-light-adapted vertebrates.


Asunto(s)
Genoma , Estrigiformes/clasificación , Estrigiformes/genética , Animales , Aves/genética , Genoma Mitocondrial , Luz , Anotación de Secuencia Molecular , Visión Ocular
11.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(6): 4475-4478, 2016 11.
Artículo en Inglés | MEDLINE | ID: mdl-26465068

RESUMEN

Eight subspecies have been proposed within the Tawny Owl (Strix aluco) species. However, recent molecular data have challenged this view, encouraging further work in this species complex. Here we reevaluated the taxonomic status between the North-Western African Tawny Owl, S. a. mauritanica, and its closest Iberian Tawny Owl population (from the S. a. sylvatica to S. a. aluco clade) separated by the Strait of Gibraltar. The Tawny Owl is a non-migratory and territorial species, and juvenile dispersal is restricted to a few kilometers around the natal site. This limited dispersal and the barrier imposed by the Strait of Gibraltar predicted a strong differentiation between the two populations. We tested this using DNA barcoding, Bayesian phylogenetic and species delimitation analysis. We found that an 81.1% of variation is due to the intergroups variation. In addition, the inter-intraspecific distances distribution revealed a barcoding gap among the two subspecies. Also, posterior probabilities and the PAB value allowed to reject the hypothesis that observed degree of distinctiveness is due to random coalescence processes. These findings clearly support the Strait of Gibraltar as an isolating barrier for this species. The subspecific status is confirmed and species status is even suggested for S. a. mauritanica.


Asunto(s)
Código de Barras del ADN Taxonómico , Estrigiformes/genética , África del Norte , Animales , Teorema de Bayes , ADN/química , ADN/aislamiento & purificación , ADN/metabolismo , Variación Genética , Gibraltar , Mitocondrias/genética , Filogenia , Filogeografía , Análisis de Secuencia de ADN , Estrigiformes/clasificación
12.
Mol Phylogenet Evol ; 94(Pt B): 626-634, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26456003

RESUMEN

Megascops screech-owls are endemic to the New World and range from southern Canada to the southern cone of South America. The 22 currently recognized Megascops species occupy a wide range of habitats and elevations, from desert to humid montane forest, and from sea level to the Andean tree line. Species and subspecies diagnoses of Megascops are notoriously difficult due to subtle plumage differences among taxa with frequent plumage polymorphism. Using three mitochondrial and three nuclear genes we estimated a phylogeny for all but one Megascops species. Phylogenies were estimated with Maximum Likelihood and Bayesian Inference, and a Bayesian chronogram was reconstructed to assess the spatio-temporal context of Megascops diversification. Megascops was paraphyletic in the recovered tree topologies if the Puerto Rican endemic M. nudipes is included in the genus. However, the remaining taxa are monophyletic and form three major clades: (1) M. choliba, M. koepckeae, M. albogularis, M. clarkii, and M. trichopsis; (2) M. petersoni, M. marshalli, M. hoyi, M. ingens, and M. colombianus; and (3) M. asio, M. kennicottii, M. cooperi, M. barbarus, M. sanctaecatarinae, M. roboratus, M. watsonii, M. atricapilla, M. guatemalae, and M. vermiculatus. Megascops watsonii is paraphyletic with some individuals more closely related to M. atricapilla than to other members in that polytypic species. Also, allopatric populations of some other Megascops species were highly divergent, with levels of genetic differentiation greater than between some recognized species-pairs. Diversification within the genus is hypothesized to have taken place during the last 8 million years, with a likely origin in Central America. The genus later expanded over much of the Americas and then diversified via multiple dispersal events from the Andes into the Neotropical lowlands.


Asunto(s)
ADN Mitocondrial/genética , Variación Genética , Filogenia , Estrigiformes/clasificación , Animales , Teorema de Bayes , Canadá , América Central , Ecosistema , Funciones de Verosimilitud , América del Sur , Estrigiformes/genética
13.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(4): 2481-2, 2016 07.
Artículo en Inglés | MEDLINE | ID: mdl-25974667

RESUMEN

The complete mitochondrial genome of Tyto longimembris has been determined in this study. It is 18,466 bp in length and consists of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes and a non-coding control region (D-loop). The overall base composition of the heavy strand of the T. longimembris mitochondrial genome is A: 30.1%, T: 23.5%, C: 31.8% and G: 14.6%. The structure of control region should be characterized by a region containing tandem repeats as two definitely separated clusters of tandem repeats were found. This study provided an important data set for phylogenetic and taxonomic analyses of Tyto species.


Asunto(s)
Genoma Mitocondrial , Estrigiformes/clasificación , Estrigiformes/genética , Animales , Composición de Base , Genes Mitocondriales , Tamaño del Genoma , Sistemas de Lectura Abierta , Filogenia , Análisis de Secuencia de ADN , Secuencias Repetidas en Tándem , Secuenciación Completa del Genoma
14.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(4): 2665-7, 2016 07.
Artículo en Inglés | MEDLINE | ID: mdl-25980662

RESUMEN

The complete sequence of the mitochondrial genome was determined for Asio flammeus, which is distributed widely in geography. The length of the complete mitochondrial genome was 18,966 bp, containing 2 rRNA genes, 22 tRNA genes, 13 protein-coding genes (PCGs), and 1 non-coding region (D-loop). All the genes were distributed on the H-strand, except for the ND6 subunit gene and eight tRNA genes which were encoded on the L-strand. The D-loop of A. flammeus contained many tandem repeats of varying lengths and repeat numbers. The molecular-based phylogeny showed that our species acted as the sister group to A. capensis and the supported Asio was the monophyletic group.


Asunto(s)
Genoma Mitocondrial/genética , Estrigiformes/genética , Animales , ADN Mitocondrial/genética , Filogenia , ARN Ribosómico/genética , ARN de Transferencia/genética , Análisis de Secuencia de ADN , Estrigiformes/clasificación
15.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(4): 2508-9, 2016 07.
Artículo en Inglés | MEDLINE | ID: mdl-26075474

RESUMEN

In this paper, the complete mitochondrial genome of Glaucidium brodiei is sequenced and reported for the first time. The mitochondrial genome is a circular molecule of 17,318 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes and a control region. Overall base composition of the complete mitochondrial DNA is A (29.9%), G (14.1%), C (32.1%) and T (23.9%), the percentage of A and T (53.8%) is slightly higher than G and C (46.2%). All the genes in G. brodiei are distributed on the H-strand, except for the ND6 subunit gene and nine tRNA genes, which are encoded on the L-strand.


Asunto(s)
Genoma Mitocondrial , Estrigiformes/clasificación , Estrigiformes/genética , Animales , Composición de Base , Genes Mitocondriales , Tamaño del Genoma , Sistemas de Lectura Abierta , Filogenia , Análisis de Secuencia de ADN , Secuenciación Completa del Genoma
16.
Zootaxa ; 3999(4): 581-8, 2015 Aug 12.
Artículo en Inglés | MEDLINE | ID: mdl-26623597

RESUMEN

Setopagis maculosa (Todd, 1920) (Aves: Caprimulgidae) was described based on a single male specimen collected by Samuel Milton Klages in French Guiana, northeastern South America. Since then, no new specimens have been collected nor have any reliable records been made, and the validity of the species has been questioned. A detailed analysis of the holotype reveals that it has unique and distinctive morphological traits that support the validity and taxonomic status of the species, which is provisionally placed in Setopagis. We present new information on the type locality at the time of its collection, which may shed some light on the habitat preferences of the species, and we provide details on its plumage that have been largely overlooked and that will be important for future field identification.


Asunto(s)
Estrigiformes/clasificación , Estructuras Animales/anatomía & histología , Estructuras Animales/crecimiento & desarrollo , Animales , Tamaño Corporal , Ecosistema , Femenino , Masculino , Tamaño de los Órganos , Estrigiformes/anatomía & histología , Estrigiformes/crecimiento & desarrollo
17.
Zootaxa ; 4040(3): 301-16, 2015 Nov 11.
Artículo en Inglés | MEDLINE | ID: mdl-26624667

RESUMEN

The endemic Cyprus Scops Owl Otus (scops) cyprius has been treated as a subspecies of the widespread Eurasian Scops Owl O. scops since at least the 1940s. However, its song is distinct from that of all other subspecies of O. scops in being double-noted, rather than single-noted. Its plumage also differs, most obviously in being consistently darker than other subspecies and in lacking a rufous morph. However, it shows no biometric differences from O. s. cycladum and southern populations of O. s. scops. It is also unusual among scops (s. l.) populations in being at least partially resident, although two specimens showing characters of this taxon were collected in Israel in early spring, and the numbers of birds that are resident on Cyprus appear to vary, with few recent winter records. It differs from O. s. scops by one synapomorphic nucleotide exchange in the analysed mitochondrial marker, indicating a recent separation. Given that large numbers of O. s. scops and O. s. cycladum pass through Cyprus on spring migration, and that the latter breeds in adjacent countries, it seems probable that cycladum would colonize the island, but for the presence of cyprius. That it does not do so, and that cyprius retains its distinctive song and plumage, suggests that isolating mechanisms exist. We recommend that cyprius be considered specifically distinct, as are other distinctively voiced insular Otus populations.


Asunto(s)
Estrigiformes/clasificación , Distribución Animal , Animales , Chipre , Ecosistema , Femenino , Islas , Masculino , Datos de Secuencia Molecular , Filogenia , Estrigiformes/genética , Estrigiformes/fisiología , Vocalización Animal
18.
Zootaxa ; 3904(1): 28-50, 2015 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-25660770

RESUMEN

Genetic and morphological analyses revealed that the type specimen of Hume's Owl Strix butleri, the geographical provenance of which is open to doubt, differs significantly from all other specimens previously ascribed to this species. Despite the absence of vocal data definitively linked to the same population as the type specimen, we consider that two species-level taxa are involved, principally because the degree of molecular differentiation is close to that seen in other taxa of Strix traditionally recognised as species. Partially complicating this otherwise straightforward issue is the recent description of "Omani Owl S. omanensis" from northern Oman based solely on photographs and sound-recordings. We consider that there is clear evidence of at least some morphological congruence between the butleri type and the phenotype described as "omanensis". As a result, we review the relative likelihood of three potential hypotheses: that "omanensis" is a synonym of butleri; that "omanensis" is a subspecies of butleri; or that "omanensis" and butleri both represent species taxa. Until such time as specimen material of "omanensis" becomes available for genetic and comparative morphological analyses, we recommend that this name be considered as a synonym of butleri, especially bearing in mind the possibility (not previously considered in detail) that the type of butleri could have originated in Arabia, specifically from Oman. We describe other populations heretofore ascribed to S. butleri as a new species. 


Asunto(s)
Estrigiformes/clasificación , Distribución Animal , Estructuras Animales/anatomía & histología , Estructuras Animales/crecimiento & desarrollo , Animales , Tamaño Corporal , ADN Mitocondrial/genética , Femenino , Variación Genética , Masculino , Datos de Secuencia Molecular , Tamaño de los Órganos , Filogenia , Estrigiformes/anatomía & histología , Estrigiformes/genética , Estrigiformes/crecimiento & desarrollo
19.
Ecology ; 95(2): 265-79, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24669721

RESUMEN

The role of competition in structuring biotic communities at fine spatial scales is well known from detailed process-based studies. Our understanding of competition's importance at broader scales is less resolved and mainly based on static species distribution maps. Here, we bridge this gap by examining the joint occupancy dynamics of an invading species (Barred Owl, Strix varia) and a resident species (Northern Spotted Owl, Strix occidentalis caurina) in a 1000-km study area over a 22-year period. Past studies of these competitors have focused on the dynamics of one species at a time, hindering efforts to parse out the roles of habitat and competition and to forecast the future of the resident species. In addition, while these studies accounted for the imperfect detection of the focal species, no multi-season analysis of these species has accounted for the imperfect detection of the secondary species, potentially biasing inference. We analyzed survey data using models that combine the general multistate-multi-season occupancy modeling framework with autologistic modeling, allowing us to account for important aspects of our study system. We found that local extinction probability increases for each species when the other is present; however, the effect of the invader on the resident is greater. Although the species prefer different habitats, these habitats are highly correlated at the patch scale, and the impacts of invader on the resident are greatest in patches that would otherwise be optimal. As a consequence, competition leads to a weaker relationship between habitat and Northern Spotted Owl occupancy. Colonization and extinction rates of the invader are closely related to neighborhood occupancy, and over the first half of the study the availability of colonists limited the rate of population growth. Competition is likely to exclude the resident species, both through its immediate effects on local extinction and by indirectly lowering colonization rates as Northern Spotted Owl occupancy declines. Our analysis suggests that dispersal limitation affects both the invasion dynamics and the scale at which the effects of competition are observed. We also provide predictions regarding the potential costs and benefits of managing Barred Owl populations at different target levels.


Asunto(s)
Conservación de los Recursos Naturales , Ecosistema , Estrigiformes/clasificación , Animales , Demografía , Extinción Biológica , Modelos Biológicos , Especificidad de la Especie , Estrigiformes/fisiología
20.
PLoS One ; 8(2): e53712, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23418422

RESUMEN

The avifauna of Indonesia is one of the richest in the world but the taxonomic status of many species remains poorly documented. The sole species of scops owl known from Lombok has long been assigned to the widespread Moluccan Scops Owl Otus magicus on the basis of superficial similarities in morphology. Field work in 2003 has shown that the territorial song of the scops owls inhabiting the foothills of Gunung Rinjani differs dramatically from that of O. magicus and is more similar to those of Rufescent Scops Owl O. rufescens and Singapore Scops Owl O. cnephaeus. Detailed comparisons of sound recordings and museum specimens with those of other scops owls in Wallacea and the Indo-Malayan region have confirmed the distinctiveness of the Lombok population. We describe Otus jolandae as a new species, the Rinjani Scops Owl. It is locally common at elevations from 25-1350 m. and occurs within Gunung Rinjani National Park. The new species is known from seven specimens collected by Alfred Everett in 1896. Otus jolandae represents the first endemic bird species from Lombok.


Asunto(s)
Especiación Genética , Estrigiformes/clasificación , Animales , Indonesia , Estrigiformes/genética
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