Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 5.975
Filtrar
1.
BMC Infect Dis ; 24(1): 478, 2024 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-38724898

RESUMEN

PURPOSE: Human adenoviruses (HAdVs) have always been suggested as one of the main causes of gastroenteritis in children. However, no comprehensive report on the global epidemiology of these viruses in pediatric gastroenteritis is available. METHODS: A systematic search was conducted to obtain published papers from 2003 to 2023 in three main databases PubMed, Scopus, and Web of Science. RESULTS: The estimated global pooled prevalence of HAdV infection in children with gastroenteritis was 10% (95% CI: 9-11%), with a growing trend after 2010. The highest prevalence was observed in Africa (20%, 95% CI: 14-26%). The prevalence was higher in inpatients (11%; 95% CI: 8-13%) and patients aged 5 years old and younger (9%; 95% CI: 7-10%). However, no significant difference was observed between male and female patients (P = 0.63). The most prevalent species was found to be the species F (57%; 95% CI: 41-72%). The most common HAdVs observed in children with gastroenteritis were types 40/41, 38, and 2. Analysis of case-control studies showed an association between HAdV and gastroenteritis in children (OR: 2.28, 95% CI; 1.51-3.44). CONCLUSION: This study provided valuable insights into the importance of HAdVs in children with gastroenteritis, especially in hospitalized and younger children. The results can be used in future preventive measurements and the development of effective vaccines.


Asunto(s)
Infecciones por Adenovirus Humanos , Adenovirus Humanos , Gastroenteritis , Humanos , Gastroenteritis/virología , Gastroenteritis/epidemiología , Adenovirus Humanos/aislamiento & purificación , Adenovirus Humanos/clasificación , Infecciones por Adenovirus Humanos/epidemiología , Infecciones por Adenovirus Humanos/virología , Preescolar , Niño , Lactante , Prevalencia , Femenino , Masculino
2.
J Med Virol ; 96(5): e29679, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38767190

RESUMEN

Acute gastroenteritis (AGE) represents a world public health relevant problem especially in children. Enteric viruses are the pathogens mainly involved in the episodes of AGE, causing about 70.00% of the cases. Apart from well-known rotavirus (RVA), adenovirus (AdV) and norovirus (NoV), there are various emerging viral pathogens potentially associated with AGE episodes. In this study, the presence of ten different enteric viruses was investigated in 152 fecal samples collected from children hospitalized for gastroenteritis. Real time PCR results showed that 49.3% of them were positive for viral detection with the following prevalence: norovirus GII 19.7%, AdV 15.8%, RVA 10.5%, human parechovirus (HPeV) 5.3%, enterovirus (EV) 3.3%, sapovirus (SaV) 2.6%. Salivirus (SalV), norovirus GI and astrovirus (AstV) 1.3% each, aichivirus (AiV) found in only one patient. In 38.2% of feces only one virus was detected, while co-infections were identified in 11.8% of the cases. Among young patients, 105 were ≤5 years old and 56.0% tested positive for viral detection, while 47 were >5 years old with 40.0% of them infected. Results obtained confirm a complex plethora of viruses potentially implicated in gastroenteritis in children, with some of them previously known for other etiologies but detectable in fecal samples. Subsequent studies should investigate the role of these viruses in causing gastroenteritis and explore the possibility that other symptoms may be ascribed to multiple infections.


Asunto(s)
COVID-19 , Coinfección , Heces , Gastroenteritis , Humanos , Gastroenteritis/virología , Gastroenteritis/epidemiología , Preescolar , Coinfección/virología , Coinfección/epidemiología , Heces/virología , Lactante , Italia/epidemiología , Niño , Masculino , Femenino , COVID-19/epidemiología , COVID-19/virología , Sapovirus/aislamiento & purificación , Sapovirus/genética , Virus/aislamiento & purificación , Virus/clasificación , Virus/genética , Prevalencia , Norovirus/aislamiento & purificación , Norovirus/genética , Adolescente , Virosis/epidemiología , Virosis/virología , Recién Nacido , SARS-CoV-2 , Rotavirus/aislamiento & purificación , Rotavirus/genética , Adenoviridae/aislamiento & purificación
3.
PLoS One ; 19(5): e0303887, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38771749

RESUMEN

BACKGROUND: Norovirus (NoV) is the leading cause of diarrheal disease worldwide and the impact is high in developing countries, including Ethiopia. Moreover, there is a significant and fluctuating global genetic diversity that varies across diverse environments over time. Nevertheless, there is a scarcity of data on the genetic diversity of NoV in Ethiopia. OBJECTIVE: This study was aimed to assess the genetic diversity and distribution of NoVs circulating in the Amhara National Regional State, Ethiopia, by considering all age groups. METHODS: A total of 519 fecal samples were collected from diarrheal patients from May 01/2021 to November 30/ 2021. The fecal samples were screened for the presence of NoVs using real-time RT-PCR by targeting a portion of the major capsid protein coding region. The positive samples were further amplified using conventional RT-PCR, and sequenced. RESULTS: The positivity rate of NoV was (8.9%; 46/519). The detection rate of NoV genogroup II (GII) and genogroup I (GI) was 38 (82.6%) and 8 (17.4%), respectively. Overall, five distinct GII (GII.3, GII.6, GII.10, GII.17, and GII.21) and two GI (GI.3 and GI.5) genotypes were detected. Within the GII types, GII.3 was the predominant (34.2%) followed by GII.21 (15.8%), GII.17 (10.5%), GII.6 and GII.10 each (2.6%). Norovirus GII.21 is reported for the first time in Ethiopia. The genetic diversity and distribution of NoVs were significantly different across the four sampling sits and age groups. The phylogenetic analysis revealed close relatedness of the current strains with published strains from Ethiopia and elsewhere. CONCLUSION: The distribution and genetic diversity of NoV was considerably high, with predominance of non-GII.4 genotypes. The GII.21 genotype is a new add on the growing evidences on the genetic diversity of NoVs in Ethiopia. Future nationwide surveillance studies are necessary to gain comprehensive data in Ethiopia.


Asunto(s)
Infecciones por Caliciviridae , Diarrea , Variación Genética , Norovirus , Filogenia , Humanos , Norovirus/genética , Norovirus/aislamiento & purificación , Norovirus/clasificación , Etiopía/epidemiología , Diarrea/virología , Diarrea/epidemiología , Adulto , Adolescente , Preescolar , Femenino , Masculino , Niño , Infecciones por Caliciviridae/epidemiología , Infecciones por Caliciviridae/virología , Lactante , Adulto Joven , Persona de Mediana Edad , Heces/virología , Genotipo , Anciano , Recién Nacido , Gastroenteritis/virología , Gastroenteritis/epidemiología
4.
J Med Virol ; 96(5): e29681, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38773815

RESUMEN

Rotavirus gastroenteritis is accountable for an estimated 128 500 deaths among children younger than 5 years worldwide, and the majority occur in low-income countries. Although the clinical trials of rotavirus vaccines in Bangladesh revealed a significant reduction of severe rotavirus disease by around 50%, the vaccines are not yet included in the routine immunization program. The present study was designed to provide data on rotavirus diarrhea with clinical profiles and genotypes before (2017-2019) and during the COVID-19 pandemic period (2020-2021). Fecal samples were collected from 2% of the diarrheal patients at icddr,b Dhaka hospital of all ages between January 2017 and December 2021 and were tested for VP6 rotavirus antigen using ELISA. The clinical manifestations such as fever, duration of diarrhea and hospitalization, number of stools, and dehydration and so on were collected from the surveillance database (n = 3127). Of the positive samples, 10% were randomly selected for genotyping using Sanger sequencing method. A total of 12 705 fecal samples were screened for rotavirus A antigen by enzyme immunoassay. Overall, 3369 (27%) were rotavirus antigen-positive, of whom children <2 years had the highest prevalence (88.6%). The risk of rotavirus A infection was 4.2 times higher in winter than in summer. Overall, G3P[8] was the most prominent genotype (45.3%), followed by G1P[8] (32.1%), G9P[8] (6.8%), and G2P[4] (6.1%). The other unusual combinations, such as G1P[4], G1P[6], G2P[6], G3P[4], G3P[6], and G9P[6], were also present. Genetic analysis on Bangladeshi strains revealed that the selection pressure (dN/dS) was estimated as <1. The number of hospital visits showed a 37% drop during the COVID-19 pandemic relative to the years before the pandemic. Conversely, there was a notable increase in the rate of rotavirus positivity during the pandemic (34%, p < 0.00) compared to the period before COVID-19 (23%). Among the various clinical symptoms, only the occurrence of watery stool significantly increased during the pandemic. The G2P[4] strain showed a sudden rise (19%) in 2020, which then declined in 2021. In the same year, G1P[8] was more prevalent than G3P[8] (40% vs. 38%, respectively). The remaining genotypes were negligible and did not exhibit much fluctuation. This study reveals that the rotavirus burden remained high during the COVID-19 prepandemic and pandemic in Bangladesh. Considering the lack of antigenic variations between the circulating and vaccine-targeted strains, integrating the vaccine into the national immunization program could reduce the prevalence of the disease, the number of hospitalizations, and the severity of cases.


Asunto(s)
COVID-19 , Heces , Genotipo , Infecciones por Rotavirus , Rotavirus , Humanos , Bangladesh/epidemiología , Rotavirus/genética , Rotavirus/aislamiento & purificación , Rotavirus/clasificación , Infecciones por Rotavirus/epidemiología , Infecciones por Rotavirus/virología , Preescolar , Lactante , COVID-19/epidemiología , COVID-19/virología , COVID-19/prevención & control , Heces/virología , Femenino , Masculino , Niño , Diarrea/virología , Diarrea/epidemiología , Adolescente , Adulto , Antígenos Virales/genética , Recién Nacido , Gastroenteritis/epidemiología , Gastroenteritis/virología , Adulto Joven , Prevalencia , SARS-CoV-2/genética , SARS-CoV-2/clasificación , Persona de Mediana Edad , Estaciones del Año
5.
J Infect ; 88(6): 106169, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38697269

RESUMEN

Gastroenteritis viruses are the leading etiologic agents of diarrhea in children worldwide. We present data from thirty-three (33) eligible studies published between 2003 and 2023 from African countries bearing the brunt of the virus-associated diarrheal mortality. Random effects meta-analysis with proportion, subgroups, and meta-regression analyses were employed. Overall, rotavirus with estimated pooled prevalence of 31.0 % (95 % CI 24.0-39.0) predominated in all primary care visits and hospitalizations, followed by norovirus, adenovirus, sapovirus, astrovirus, and aichivirus with pooled prevalence estimated at 15.0 % (95 % CI 12.0-20.0), 10 % (95 % CI 6-15), 4.0 % (95 % CI 2.0-6.0), 4 % (95 % CI 3-6), and 2.3 % (95 % CI 1-3), respectively. Predominant rotavirus genotype was G1P[8] (39 %), followed by G3P[8] (11.7 %), G9P[8] (8.7 %), and G2P[4] (7.1 %); although, unusual genotypes were also observed, including G3P[6] (2.7 %), G8P[6] (1.7 %), G1P[6] (1.5 %), G10P[8] (0.9 %), G8P[4] (0.5 %), and G4P[8] (0.4 %). The genogroup II norovirus predominated over the genogroup I-associated infections (84.6 %, 613/725 vs 14.9 %, 108/725), with the GII.4 (79.3 %) being the most prevalent circulating genotype. In conclusion, this review showed that rotavirus remains the leading driver of viral diarrhea requiring health care visits and hospitalization among under-five years children in Africa. Thus, improved rotavirus vaccination in the region and surveillance to determine the residual burden of rotavirus and the evolving trend of other enteric viruses are needed for effective control and management of cases.


Asunto(s)
Gastroenteritis , Humanos , Gastroenteritis/virología , Gastroenteritis/epidemiología , Preescolar , Lactante , África/epidemiología , Prevalencia , Diarrea/virología , Diarrea/epidemiología , Rotavirus/genética , Rotavirus/aislamiento & purificación , Rotavirus/clasificación , Recién Nacido , Genotipo , Virosis/epidemiología , Virosis/virología , Infecciones por Rotavirus/epidemiología , Infecciones por Rotavirus/virología , Virus/clasificación , Virus/genética , Virus/aislamiento & purificación
6.
BMC Pediatr ; 24(1): 303, 2024 May 04.
Artículo en Inglés | MEDLINE | ID: mdl-38704530

RESUMEN

BACKGROUND: Acute gastroenteritis (AGE) causes significant morbidity in children worldwide; however, the disease burden of children hospitalized with viral gastroenteritis in China has been rarely described. Through this study, we analyzed the data of hospitalized children with viral gastroenteritis to explore the changes in the epidemiology and clinical characteristics of viral gastroenteritis in the mainland of China. METHODS: Data were extracted from Futang Children's Medical Development Research Center (FRCPD), between 2016 and 2020, across 27 hospitals in 7 regions. The demographics, geographic distribution, pathogenic examination results, complications, hospital admission date, length of hospital stays, hospitalization charges and outcomes were collected and analyzed. RESULTS: Viral etiological agents included rotavirus (RV), adenovirus (ADV), norovirus (NV) and coxsackievirus (CV) that were detected in 25,274 (89.6%), 1,047 (3.7%), 441 (1.5%) and 83 (0.3%) cases. There was a higher prevalence of RV and NV infection among children younger than 3 years of age. RV and NV had the highest detection rates in winter, while ADV in summer. Children with viral gastroenteritis were often accompanied by other diseases, such as myocardial diseases (10.98-31.04%), upper respiratory tract diseases (1.20-20.15%), and seizures (2.41-14.51%). Among those cases, the co-infection rate with other pathogens was 6.28%, with Mycoplasma pneumoniae (M. pneumoniae), Epstein-Barr virus (EBV), and influenza virus (FLU) being the most common pathogens. The median length of stay was 5 days, and the median cost of hospitalization corresponded to587 US dollars. CONCLUSIONS: This finding suggests that viral gastroenteritis, especially those caused by RV, is a prevalent illness among younger children. Co-infections and the presence of other diseases are common. The seasonality and regional variation of viral etiological agents highlight the need for targeted prevention and control measures. Although viral gastroenteritis rarely leads to death, it also results in a significant economic burden on healthcare systems.


Asunto(s)
Gastroenteritis , Hospitalización , Humanos , Gastroenteritis/epidemiología , Gastroenteritis/virología , China/epidemiología , Preescolar , Estudios Retrospectivos , Lactante , Masculino , Femenino , Niño , Hospitalización/estadística & datos numéricos , Tiempo de Internación/estadística & datos numéricos , Adolescente , Prevalencia , Estaciones del Año , Recién Nacido , Niño Hospitalizado/estadística & datos numéricos , Enfermedad Aguda , Infecciones por Rotavirus/epidemiología
7.
Rev Assoc Med Bras (1992) ; 70(4): e20230972, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38716934

RESUMEN

OBJECTIVE: Our objective was to determine the frequency of rotavirus, adenovirus, and rota-adenovirus co-infections and investigate the fecal leukocyte rate associated with these infections in patients with gastroenteritis. METHODS: This is a retrospective study. We identified patients who were admitted to the pediatric emergency department with acute gastroenteritis and had their stool samples tested for rotavirus and/or adenovirus antigens. Among them, we determined the individuals who underwent stool microscopy tests on the same day and recorded their results. RESULTS: A total of 1,577 patients who underwent testing for rotavirus and/or adenovirus antigens in their stool samples were identified. Among these patients, 583 individuals had concurrent fecal microscopy results. The prevalence of solely rotavirus antigen positivity was 16.4%, solely adenovirus antigen positivity was 2.9%, and rota-adenovirus co-infections were detected in 1.8% of the children. The fecal leukocyte rates in children infected with rotavirus, adenovirus, and rota-adenovirus co-infections were 4.8, 13.3, and 88.9%, respectively. CONCLUSION: The presence of fecal leukocytes was detected at a high rate in cases of viral gastroenteritis, especially in rota-adenovirus co-infections. Therefore, clinicians should not consider only bacterial pathogens in the presence of fecal leukocytes.


Asunto(s)
Coinfección , Heces , Gastroenteritis , Infecciones por Rotavirus , Humanos , Gastroenteritis/virología , Gastroenteritis/epidemiología , Estudios Retrospectivos , Heces/virología , Femenino , Masculino , Preescolar , Lactante , Infecciones por Rotavirus/epidemiología , Enfermedad Aguda , Coinfección/epidemiología , Niño , Recuento de Leucocitos , Infecciones por Adenovirus Humanos/epidemiología , Infecciones por Adenoviridae/epidemiología , Leucocitos , Rotavirus/aislamiento & purificación , Rotavirus/inmunología , Adenoviridae/aislamiento & purificación
8.
Euro Surveill ; 29(20)2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38757286

RESUMEN

BackgroundGiardia duodenalis is a major cause of gastroenteritis globally, and is the most common food- and waterborne parasitic infection in Europe.AimTo describe the epidemiology of reported acute giardiasis cases in Germany and compare demographic and clinical characteristics between imported and autochthonous cases.MethodsWe conducted a descriptive analysis of giardiasis cases that fulfilled the national case definition and were reported between January 2002 and December 2021. We defined an imported case as having at least one place of exposure abroad in the 3-25 days before symptom onset. We analysed case numbers and incidence by age, sex, month reported and geographic region, both overall and stratified by autochthonous and imported cases.ResultsFrom 2002 to 2021, 72,318 giardiasis cases were reported in Germany, corresponding to a mean annual incidence of 4.4 per 100,000 population. Annual incidence gradually decreased since 2013, declining sharply during the COVID-19 pandemic in 2020-21. Of 69,345 cases reported between 2002 and 2019, 35% were imported. Incidence of autochthonous cases (overall yearly mean: 3.1/100,000) was highest in males and young children (< 5 years); imported cases were predominantly adults aged 20-39 years. We identified seasonal patterns for imported and autochthonous cases.ConclusionsGiardiasis in Germany is typically assumed to be imported. Our data, however, underline the importance of autochthonous giardiasis. Travel advice might reduce imported infections, but prevention strategies for autochthonous infections are less clear. Dietary, behavioural and environmental risk factors need to be further investigated to enhance infection prevention measures for autochthonous giardiasis.


Asunto(s)
Giardiasis , Humanos , Giardiasis/epidemiología , Alemania/epidemiología , Adulto , Masculino , Femenino , Incidencia , Persona de Mediana Edad , Adolescente , Niño , Adulto Joven , Anciano , Preescolar , Lactante , Viaje , COVID-19/epidemiología , Vigilancia de la Población , SARS-CoV-2 , Distribución por Edad , Gastroenteritis/epidemiología , Gastroenteritis/parasitología , Enfermedades Transmisibles Importadas/epidemiología , Distribución por Sexo , Estaciones del Año , Anciano de 80 o más Años
9.
J Med Virol ; 96(4): e29565, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38558056

RESUMEN

Group A rotaviruses (RVAs) are generally highly species-specific; however, some strains infect across species. Feline RVAs sporadically infect humans, causing gastroenteritis. In 2012 and 2013, rectal swab samples were collected from 61 asymptomatic shelter cats at a public health center in Mie Prefecture, Japan, to investigate the presence of RVA and any association with human infections. The analysis identified G6P[9] strains in three cats and G3P[9] strains in two cats, although no feline RVA sequence data were available for the former. A whole-genome analysis of these G6P[9] strains identified the genotype constellation G6-P[9]-I2-R2-C2-M2-A3-N2-T3-E3-H3. The nucleotide identity among these G6P[9] strains exceeded 99.5% across all 11 gene segments, indicating the circulation of this G6P[9] strain among cats. Notably, strain RVA/Human-wt/JPN/KF17/2010/G6P[9], previously detected in a 3-year-old child with gastroenteritis, shares high nucleotide identity (>98%) with Mie20120017f, the representative G6P[9] strain in this study, across all 11 gene segments, confirming feline RVA infection and symptomatic presentation in this child. The VP7 gene of strain Mie20120017f also shares high nucleotide identity with other sporadically reported G6 RVA strains in humans. This suggests that feline-origin G6 strains as the probable source of these sporadic G6 RVA strains causing gastroenteritis in humans globally. Moreover, a feline-like human G6P[8] strain circulating in Brazil in 2022 was identified, emphasizing the importance of ongoing surveillance to monitor potential global human outbreaks of RVA.


Asunto(s)
Gastroenteritis , Infecciones por Rotavirus , Rotavirus , Gatos , Humanos , Animales , Preescolar , Rotavirus/genética , Infecciones por Rotavirus/epidemiología , Infecciones por Rotavirus/veterinaria , Infecciones por Rotavirus/genética , Genoma Viral , Filogenia , Gastroenteritis/epidemiología , Gastroenteritis/veterinaria , Gastroenteritis/genética , Genotipo , Brotes de Enfermedades , Nucleótidos
10.
J Med Virol ; 96(4): e29615, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38628102

RESUMEN

Human adenovirus (HAdV) is one of the causative viruses of acute gastroenteritis (AGE) in children worldwide. Species F is known to be enteric adenovirus (genotypes 40 and 41) detected in stool samples. In Japan, we conducted an epidemiological study and molecular characterization of HAdV before and after the COVID-19 pandemic from 2017 to 2023. Among 821 patients, HAdV was detected in 118 AGE cases (14.4%). During a period of 6 years, the HAdV detection rates for each year were relatively low at 3.7% and 0%, in 2017-2018, and 2020-2021, respectively. However, the detection rate increased to remarkably high rates, ranging from 13.3% to 27.3% in the other 4-year periods. Of these HAdV-positive strains, 83.1% were F41 genotypes and 16.9% were other genotypes (A31, B3, C1, C2/C6, and C5). Phylogenetic analyses of the nucleotide and deduced amino acid sequences of the full-length hexon gene demonstrated that HAdV-F41 strains were comprised of three clades, and each clade was distributed across the study period from 2017 to 2023. Analysis of deduced amino acid sequences of the hexon gene of the representative HAdV-F41 strains from each clade revealed numerous amino acid substitutions across hypervariable regions (HVRs) from HVR-1 to HVR-7, two insertions in HVR-1 and HVR-7, and two deletions in HVR-1 and HVR-2 of the hexon gene compared to those of the prototype strain, particularly, those of clade 3 HAdV-F41 strains. The findings suggested that the HAdV-F41 of each clade was stable, conserved, and co-circulated for over two decades in Japan.


Asunto(s)
Infecciones por Adenoviridae , Infecciones por Adenovirus Humanos , Adenovirus Humanos , Gastroenteritis , Niño , Humanos , Adenoviridae/genética , Japón/epidemiología , Filogenia , Pandemias , Análisis de Secuencia de ADN , Adenovirus Humanos/genética , Infecciones por Adenoviridae/epidemiología , Gastroenteritis/epidemiología , Infecciones por Adenovirus Humanos/epidemiología
11.
J Clin Virol ; 172: 105676, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38636263

RESUMEN

BACKGROUND: Viral gastroenteritis continues to be a leading cause of death in low-income countries. The impact of nonpharmaceutical interventions (NPIs) on the transmission of gastroenteritis-causing viruses during the COVID-19 pandemic is understudied. OBJECTIVES: To investigate the 10-year trends of enteric viruses and estimate the impact of implementing and mitigating NPIs. STUDY DESIGN: Data regarding norovirus, rotavirus, adenovirus, astrovirus, and sapovirus detection were collected from five Korean hospitals between January 2013 and April 2023. We compared positivity between the pre-pandemic, pandemic, and post-pandemic periods. The causal effects of implementing and mitigating NPIs were quantified using the Bayesian Structural Time Series (BSTS) model. RESULTS: Norovirus was most frequently detected (9.9 %), followed by rotavirus (6.7 %), adenovirus (3.3 %), astrovirus (1.4 %), and sapovirus (0.6 %). During the pandemic, the positivity of all five viruses decreased, ranging from -1.0 % to -8.1 %, with rotavirus showing the greatest decrease. In the post-pandemic period, positivity rebounded for all viruses except for rotavirus. The BSTS model revealed that NPI implementation negatively affected the detection of all five viruses, resulting in reductions ranging from -73.0 % to -91.0 % compared to the prediction, with rotavirus being the least affected. Conversely, NPI mitigation positively affected the detection of all viruses, ranging from 79.0 % to 200.0 %, except for rotavirus. CONCLUSIONS: Trends observed over 10 years show that NPIs have had a major impact on changes in enteric virus detection. The effect of vaccines, in addition to NPIs, on rotavirus detection requires further investigation. Our findings emphasize the importance of NPIs in infection control and prevention.


Asunto(s)
Gastroenteritis , Humanos , Gastroenteritis/virología , Gastroenteritis/epidemiología , Gastroenteritis/prevención & control , COVID-19/epidemiología , COVID-19/prevención & control , República de Corea/epidemiología , Sapovirus/aislamiento & purificación , Sapovirus/genética , Rotavirus/aislamiento & purificación , Heces/virología , Teorema de Bayes , Norovirus/aislamiento & purificación , SARS-CoV-2
12.
J Clin Virol ; 172: 105679, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38677156

RESUMEN

OBJECTIVE: Norovirus (NoV) is an important human pathogen that can cause severe gastroenteritis in vulnerable populations. This study aimed to analyze the epidemiological and genetic characteristics of 2021-2023 NoV in Hangzhou, China. METHODS: This study enrolled patients aged 0-18 years who underwent NoV RNA detection in the hospital between January 2021 and October 2023 and analyzed the epidemiological characteristics of NoV. Polymerase chain reaction (PCR) was used to detect NoV RNA. Subtype classification and whole-genome sequencing were performed. RESULTS: There was a high prevalence of NoV infection in 2023, with NoV-positive samples accounting for 63.10 % of the total number of positive samples collected during the three-year period. The prevalence was abnormally high in summer, and the number of positive samples accounted for 48.20 % of the total positive samples for the whole year, which was much greater than the level in the same period in previous years (2023, 48.20% vs 2021, 13.66% vs 2022, 15.21 %). The GⅡ.4 subtype played a leading role, followed by increased mixed infection with GⅠ.5 and GⅡ.4. Whole-genome sequencing results suggested that GII.P16-GⅡ.4 had R297H and D372N key locus mutations. The evolutionary rate was 4.29 × 10-3 for the RdRp gene and 4.84 × 10-3 for the VP1 gene. The RdRp gene and VP1 gene of NoV GII.P16-GⅡ.4 have undergone rapid population evolution during the COVID-19 epidemic. CONCLUSION: In the summer of 2023, an abnormally high incidence of NoV appeared in Hangzhou, China. The major epidemic strain GII.P16-GⅡ.4 showed a certain range of gene mutations and a fast evolutionary rate.


Asunto(s)
Infecciones por Caliciviridae , Gastroenteritis , Norovirus , Filogenia , ARN Viral , Secuenciación Completa del Genoma , Humanos , China/epidemiología , Infecciones por Caliciviridae/epidemiología , Infecciones por Caliciviridae/virología , Norovirus/genética , Norovirus/clasificación , Norovirus/aislamiento & purificación , Lactante , Preescolar , Niño , Adolescente , Gastroenteritis/epidemiología , Gastroenteritis/virología , Recién Nacido , Masculino , Femenino , ARN Viral/genética , Prevalencia , Genotipo , Genoma Viral , Estaciones del Año , Heces/virología
13.
Artículo en Inglés | MEDLINE | ID: mdl-38656038

RESUMEN

Noroviruses are highly infectious, genetically diverse viruses. Global outbreaks occur frequently, making molecular surveillance important for infection monitoring. This cross-sectional descriptive study aimed to monitor cases of norovirus gastroenteritis in the Brazilian Amazon. Fecal samples were tested by immunoenzymatic assay, RT-PCR and genetic sequencing for the ORF1/ORF2 and protease regions. Bayesian inference with a molecular clock was employed to construct the phylogeny. The norovirus prevalence was 25.8%, with a higher positivity rate among children aged 0-24 months. Genogroup GII accounted for 98.1% of the sequenced samples, while GI accounted for 1.9% of them. The GII.P16/GII.4 genotype was the most prevalent, with an evolution rate of 2.87x10-3 and TMRCA estimated in 2012. This study demonstrates that norovirus is a primary causative agent of gastroenteritis and provides data on viral genetic diversity that may facilitate infection surveillance and vaccine development.


Asunto(s)
Infecciones por Caliciviridae , Heces , Gastroenteritis , Genotipo , Norovirus , Filogenia , Norovirus/genética , Norovirus/clasificación , Brasil/epidemiología , Humanos , Infecciones por Caliciviridae/epidemiología , Infecciones por Caliciviridae/virología , Lactante , Gastroenteritis/virología , Gastroenteritis/epidemiología , Preescolar , Estudios Transversales , Heces/virología , Recién Nacido , Niño , Femenino , Masculino , Adolescente , Adulto , ARN Viral/genética , Prevalencia , Adulto Joven , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Persona de Mediana Edad , Anciano , Variación Genética
14.
Biomed Environ Sci ; 37(3): 278-293, 2024 Mar 20.
Artículo en Inglés | MEDLINE | ID: mdl-38582992

RESUMEN

Objective: This study aimed to understand the epidemic status and phylogenetic relationships of rotavirus group A (RVA) in the Pearl River Delta region of Guangdong Province, China. Methods: This study included individuals aged 28 days-85 years. A total of 706 stool samples from patients with acute gastroenteritis collected between January 2019 and January 2020 were analyzed for 17 causative pathogens, including RVA, using a Gastrointestinal Pathogen Panel, followed by genotyping, virus isolation, and complete sequencing to assess the genetic diversity of RVA. Results: The overall RVA infection rate was 14.59% (103/706), with an irregular epidemiological pattern. The proportion of co-infection with RVA and other pathogens was 39.81% (41/103). Acute gastroenteritis is highly prevalent in young children aged 0-1 year, and RVA is the key pathogen circulating in patients 6-10 months of age with diarrhea. G9P[8] (58.25%, 60/103) was found to be the predominant genotype in the RVA strains, and the 41 RVA-positive strains that were successfully sequenced belonged to three different RVA genotypes in the phylogenetic analysis. Recombination analysis showed that gene reassortment events, selection pressure, codon usage bias, gene polymorphism, and post-translational modifications (PTMs) occurred in the G9P[8] and G3P[8] strains. Conclusion: This study provides molecular evidence of RVA prevalence in the Pearl River Delta region of China, further enriching the existing information on its genetics and evolutionary characteristics and suggesting the emergence of genetic diversity. Strengthening the surveillance of genotypic changes and gene reassortment in RVA strains is essential for further research and a better understanding of strain variations for further vaccine development.


Asunto(s)
Gastroenteritis , Infecciones por Rotavirus , Rotavirus , Niño , Humanos , Lactante , Preescolar , Rotavirus/genética , Infecciones por Rotavirus/epidemiología , Filogenia , Heces , Gastroenteritis/epidemiología , Genotipo , China/epidemiología , Polimorfismo Genético
15.
Wilderness Environ Med ; 35(2): 173-182, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38613339

RESUMEN

INTRODUCTION: From April 1 to May 31, 2022, Grand Canyon National Park received increased acute gastroenteritis reports. Pooled portable toilet specimens identified norovirus genogroups I and II. We sought to determine outbreak transmission contributors and individual risk factors while rafting or backpacking in the park. METHODS: Grand Canyon rafters and backpackers were surveyed online from June 13-July 8, 2022, and a Cox proportional hazards model was used to identify predictors associated with illness and adjusted for potential confounding factors. RESULTS: Among 762 surveys, 119 cases and 505 well persons submitted complete survey data. Illness among rafters was associated with interaction with ill persons during the trip (adjusted hazard ratio [adjHR] = 3.4 [95%CI 2.3-5.0]) and lack of any hand hygiene (1.2 [0.7-1.9]) or use of only sanitizer or water (1.6 [1.04-2.6]) before snacks. Younger rafters had higher illness rates compared to those ≥60 y (1.5 [1.2-1.8] for ages 40-59 and 2.2 [1.4-3.5] for ages <40 y). CONCLUSIONS: Person-to-person transmission likely accounted for the widespread outbreak. Future outbreak mitigation efforts on river trips could focus on symptom screening before the trip starts, prompt separation of ill and well passengers, strict adherence to hand hygiene with soap and water, minimizing social interactions among rafting groups, and widespread outbreak notices and education to all park users.


Asunto(s)
Brotes de Enfermedades , Gastroenteritis , Humanos , Adulto , Persona de Mediana Edad , Gastroenteritis/epidemiología , Gastroenteritis/virología , Masculino , Femenino , Colorado/epidemiología , Infecciones por Caliciviridae/epidemiología , Infecciones por Caliciviridae/transmisión , Infecciones por Caliciviridae/virología , Adulto Joven , Factores de Riesgo , Parques Recreativos , Anciano , Natación , Norovirus , Adolescente
16.
Emerg Infect Dis ; 30(5): 968-973, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38666613

RESUMEN

We conducted a large surveillance study among members of an integrated healthcare delivery system in Pacific Northwest of the United States to estimate medical costs attributable to medically attended acute gastroenteritis (MAAGE) on the day care was sought and during 30-day follow-up. We used multivariable regression to compare costs of MAAGE and non-MAAGE cases matched on age, gender, and index time. Differences accounted for confounders, including race, ethnicity, and history of chronic underlying conditions. Analyses included 73,140 MAAGE episodes from adults and 18,617 from children who were Kaiser Permanente Northwest members during 2014-2016. Total costs were higher for MAAGE cases relative to non-MAAGE comparators as were costs on the day care was sought and costs during follow-up. Costs of MAAGE are substantial relative to the cost of usual-care medical services, and much of the burden accrues during short-term follow-up.


Asunto(s)
Costo de Enfermedad , Prestación Integrada de Atención de Salud , Gastroenteritis , Costos de la Atención en Salud , Humanos , Gastroenteritis/epidemiología , Gastroenteritis/economía , Prestación Integrada de Atención de Salud/economía , Masculino , Femenino , Adulto , Niño , Preescolar , Estados Unidos/epidemiología , Adolescente , Persona de Mediana Edad , Costos de la Atención en Salud/estadística & datos numéricos , Adulto Joven , Lactante , Anciano , Enfermedad Aguda/epidemiología , Historia del Siglo XXI
18.
Viruses ; 16(4)2024 04 22.
Artículo en Inglés | MEDLINE | ID: mdl-38675994

RESUMEN

We investigated the molecular epidemiology of human norovirus (HuNoV) in all age groups using samples from April 2019 to March 2023, before and after the COVID-19 countermeasures were implemented. GII.2[P16] and GII.4[P31], the prevalent strains in Japan before COVID-19 countermeasures, remained prevalent during the COVID-19 pandemic, except from April to November 2020; in 2021, the prevalence of GII.2[P16] increased among children. Furthermore, there was an increase in the prevalence of GII.4[P16] after December 2022. Phylogenetic analysis of GII.P31 RdRp showed that some strains detected in 2022 belonged to a different cluster of other strains obtained during the present study period, suggesting that HuNoV strains will evolve differently even if they have the same type of RdRp. An analysis of the amino acid sequence of VP1 showed that some antigenic sites of GII.4[P16] were different from those of GII.4[P31]. The present study showed high infectivity of HuNoV despite the COVID-19 countermeasures and revealed changes in the prevalent genotypes and mutations of each genotype. In the future, we will investigate whether GII.4[P16] becomes more prevalent, providing new insights by comparing the new data with those analyzed in the present study.


Asunto(s)
COVID-19 , Infecciones por Caliciviridae , Genotipo , Norovirus , Filogenia , Humanos , Norovirus/genética , Norovirus/clasificación , Japón/epidemiología , Infecciones por Caliciviridae/epidemiología , Infecciones por Caliciviridae/virología , COVID-19/epidemiología , COVID-19/virología , COVID-19/prevención & control , Niño , Preescolar , Lactante , Adulto , Adolescente , Persona de Mediana Edad , Adulto Joven , SARS-CoV-2/genética , SARS-CoV-2/clasificación , Anciano , Femenino , Masculino , Prevalencia , Epidemiología Molecular , Recién Nacido , Anciano de 80 o más Años , Gastroenteritis/virología , Gastroenteritis/epidemiología , Gastroenteritis/prevención & control , Heces/virología
19.
Am J Trop Med Hyg ; 110(4): 759-767, 2024 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-38471149

RESUMEN

Viral gastrointestinal infections are an important public health concern, and the occurrence of asymptomatic enteric virus infections makes it difficult to prevent and control their spread. This study aimed to determine the prevalence of and factors associated with asymptomatic enteric virus infection in adults in northern Laos. Fecal samples were collected from apparently healthy participants who did not report diarrhea or high fever at the time of the survey in northern Laos, and enteric viruses were detected using polymerase chain reaction (PCR) and reverse transcription (RT)-PCR. Individual characteristics, including the gut microbiome, were compared between asymptomatic carriers and noncarriers of each enteric virus. Of the participants (N = 255), 12 (4.7%) were positive for norovirus genogroup I (GI), 8 (3.1%) for human adenovirus, and 1 (0.4%) for norovirus GII; prevalence tended to be higher in less-modernized villages. Gut microbial diversity (evaluated by the number of operational taxonomic units) was higher in asymptomatic carriers of norovirus GI or human adenovirus than in their noncarriers. Gut microbiome compositions differed significantly between asymptomatic carriers and noncarriers of norovirus GI or human adenovirus (permutational analysis of variance, P <0.05). These findings imply an association between asymptomatic enteric virus infection and modernization and/or the gut microbiome in northern Laos.


Asunto(s)
Infecciones por Caliciviridae , Gastroenteritis , Microbioma Gastrointestinal , Norovirus , Virosis , Adulto , Humanos , Gastroenteritis/epidemiología , Microbioma Gastrointestinal/genética , Laos/epidemiología , Diarrea/epidemiología , Norovirus/genética , Virosis/epidemiología , Heces , Infecciones Asintomáticas/epidemiología , Infecciones por Caliciviridae/epidemiología
20.
Euro Surveill ; 29(10)2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38456215

RESUMEN

BackgroundOutbreaks of norovirus gastroenteritis aboard cruise ships may affect a large number of people, debilitate vulnerable travellers, disrupt vacations and cause economic losses to the cruise ship industry.AimWe aimed to identify risk factors for norovirus outbreaks on cruise ships and assess the effectiveness of prevention and control measures.MethodsWe conducted a systematic literature review searching PubMed and Scopus databases as well as grey literature for articles and reports describing norovirus outbreaks on cruise ships between 1990 and 2020. We also performed a meta-analysis of norovirus prevalence in passengers and crew members.ResultsData from 45 outbreaks on 26 cruise ships from 1990 to 2020 were identified in 13 articles and five reports, with a weighted average of prevalence (attack rate) for passengers of 7% (95% confidence interval (CI): 5.00-9.00) and for crew of 2% (95% CI: 0.00-3.00). Person-to-person was the most frequent mode of transmission in 35 of the 45 outbreaks (in 14 the only mode and in 21 as part of multiple transmission routes). Having an ill cabin mate (OR = 38.70; 95% CI: 13.51-110.86) was the most common risk factor. Six outbreak investigations reported poor hygiene, while four reported satisfactory hygiene in the cruise setting. Behavioural risk factors among travellers were investigated in three of the 13 studies.ConclusionsThe findings indicate a need for behavioural interventions to improve personal hygiene, symptom reporting and compliance with isolation measures, and for reconsidering current isolation policies where symptomatic and healthy individuals are isolated in the same cabin.


Asunto(s)
Gastroenteritis , Norovirus , Humanos , Navíos , Gastroenteritis/epidemiología , Gastroenteritis/prevención & control , Viaje , Brotes de Enfermedades/prevención & control
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA