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1.
Curr Microbiol ; 81(11): 367, 2024 Sep 19.
Artículo en Inglés | MEDLINE | ID: mdl-39299961

RESUMEN

Alternaria species (Deuteromycetes, Ascomycota) as ubiquitous fungi and prolific producers of a variety of toxic compounds are a part of microbiomes of plants, humans, and animals, mainly causing disease, allergic reactions, and toxicosis. However, some species have also been reported as endophytic microorganisms with highly bioactive metabolites. Our previous results indicate that potentially endophytic Alternaria species from Cupressaceae produce bioactive metabolites that possibly contribute to plant holobiont's health. Here, a possible mechanism behind this bioactivity is elucidated. As some endophytic fungi are reported to produce cytotoxic taxane diterpenoids, eight potentially endophytic Alternaria isolates from our collection were analyzed for the presence of the key genes of the paclitaxel (Taxol) biosynthetic pathway, i.e., taxadin synthase (ts), 10-deacetylbaccatin III-10-O-acetyltransferase (dbat), and C-13-phenylpropanoid side-chain CoA acyltransferase (bapt). The presence of all genes, i.e., ts, dbat, and bapt, was detected by PCR in six isolates and dbat and bapt in two isolates. Chemical analyses of the fermentation broths by TLC and HPLC chromatography and IR spectroscopy indicated the synthesis of the final product, i.e., paclitaxel. So, we introduce the synthesis of taxane diterpenoids as a possible mechanism by which Alternaria occupies the plant niches and protects the plant holobiont in the presence of competing microorganisms.


Asunto(s)
Alternaria , Vías Biosintéticas , Taxoides , Alternaria/genética , Alternaria/metabolismo , Taxoides/metabolismo , Vías Biosintéticas/genética , Endófitos/metabolismo , Endófitos/genética , Endófitos/aislamiento & purificación , Endófitos/clasificación , Hidrocarburos Aromáticos con Puentes/metabolismo , Diterpenos/metabolismo , Paclitaxel/biosíntesis , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Genómica , Filogenia
2.
Genes Genomics ; 46(9): 1107-1122, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-39126602

RESUMEN

BACKGROUND AND RESEARCH PURPOSE: Paeoniflorin and albiflorin are monoterpene glycosides that exhibit various medicinal properties in Paeonia species. This study explored the terpene biosynthesis pathway and analyzed the distribution of these compounds in different tissues of two Korean landraces of Paeonia lactiflora to gain insights into the biosynthesis of monoterpene glycosides in P. lactiflora and their potential applications. MATERIALS AND METHODS: Two Korean landraces, Hongcheon var. and Hwacheon var, of P. lactiflora were used for the analyses. Contents of the paeoniflorin and albiflorin were analyzed using HPLC. RNA was extracted, sequenced, and subjected to transcriptome analysis. Differential gene expression, KEGG, and GO analyses were performed. Paeoniflorin biosynthesis genes were isolated from the transcriptomes using the genes in Euphorbia maculata with the NBLAST program. Phylogenetic analysis of of 1-Deoxy-D-xylulose 5-phosphate synthase (DOXPS), geranyl pyrophosphate synthase (GPPS), and pinene synthase (PS) was carried out with ClustalW and MEGA v5.0. RESULTS AND DISCUSSION: Analysis of paeoniflorin and albiflorin content in different tissues of the two P. lactiflora landraces revealed significant variation. Transcriptome analysis yielded 36,602 unigenes, most of which were involved in metabolic processes. The DEG analysis revealed tissue-specific expression patterns with correlations between landraces. The isolation of biosynthetic genes identified 173 candidates. Phylogenetic analysis of the key enzymes in these pathways provides insights into their evolutionary relationships. The sequencing and analysis of DOXPS, GPPS, PS revealed distinct clades and subclades, highlighting their evolutionary divergence and functional conservation. Our findings highlight the roots as the primary sites of paeoniflorin and albiflorin accumulation in P. lactiflora, underscoring the importance of tissue-specific gene expression in their biosynthesis. CONCLUSION: this study advances our understanding of monoterpene glycoside production and distribution in Paeonia, thereby guiding further plant biochemistry investigations.


Asunto(s)
Glucósidos , Monoterpenos , Paeonia , Paeonia/genética , Paeonia/metabolismo , Glucósidos/metabolismo , Glucósidos/biosíntesis , Monoterpenos/metabolismo , Hidrocarburos Aromáticos con Puentes/metabolismo , Filogenia , Regulación de la Expresión Génica de las Plantas , Transcriptoma/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Vías Biosintéticas/genética
3.
Int J Mol Sci ; 25(12)2024 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-38928114

RESUMEN

UV-B is an important environmental factor that differentially affects plant growth and secondary metabolites. The effects of supplemental ultraviolet-B (sUV-B) exposure (T1, 1.40 kJ·m-2·day-1; T2, 2.81 kJ·m-2·day-1; and T3, 5.62 kJ·m-2·day-1) on the growth biomass, physiological characteristics, and secondary metabolites were studied. Our results indicated that leaf thickness was significantly (p < 0.05) reduced under T3 relative to the control (natural light exposure, CK); The contents of 6-BA and IAA were significantly reduced (p < 0.05); and the contents of ABA, 10-deacetylbaccatin III, and baccatin III were significantly (p < 0.05) increased under T1 and T2. The paclitaxel content was the highest (0.036 ± 0.0018 mg·g-1) under T3. The cephalomannine content was significantly increased under T1. Hmgr gene expression was upregulated under T1 and T3. The gene expressions of Bapt and Dbtnbt were significantly (p < 0.05) upregulated under sUV-B exposure, and the gene expressions of CoA, Ts, and Dbat were significantly (p < 0.05) downregulated. A correlation analysis showed that the 6-BA content had a significantly (p < 0.05) positive correlation with Dbat gene expression. The IAA content had a significantly (p < 0.05) positive correlation with the gene expression of Hmgr, CoA, Ts, and Dbtnbt. The ABA content had a significantly (p < 0.05) positive correlation with Bapt gene expression. Dbat gene expression had a significantly (p < 0.05) positive correlation with the 10-deacetylbaccatin content. Hmgr gene expression was positively correlated with the contents of baccatin III and cephalomannine. Bapt gene expression had a significantly (p < 0.01) positive correlation with the paclitaxel content. A factor analysis showed that the accumulation of paclitaxel content was promoted under T2, which was helpful in clarifying the accumulation of taxane compounds after sUV-B exposure.


Asunto(s)
Regulación de la Expresión Génica de las Plantas , Taxoides , Taxus , Rayos Ultravioleta , Taxus/metabolismo , Taxus/genética , Taxoides/metabolismo , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Paclitaxel , Hojas de la Planta/metabolismo , Hojas de la Planta/efectos de los fármacos , Hidrocarburos Aromáticos con Puentes/metabolismo , Ácidos Indolacéticos/metabolismo , Reguladores del Crecimiento de las Plantas/metabolismo , Reguladores del Crecimiento de las Plantas/farmacología , Ácido Abscísico/metabolismo , Alcaloides
4.
Chem Commun (Camb) ; 60(36): 4810-4813, 2024 Apr 30.
Artículo en Inglés | MEDLINE | ID: mdl-38602391

RESUMEN

The non-canonical amino acid adamantylglycine (Ada) is introduced into peptides to allow high-affinity binding to cucurbit[7]uril (CB7). Introduction of Ada into a cell-penetrating peptide (CPP) sequence had minimal influence on the membrane transport, yet enabled up- and down-regulation of the membrane transport activity.


Asunto(s)
Péptidos de Penetración Celular , Glicina , Compuestos Heterocíclicos con 2 Anillos , Imidazolidinas , Compuestos Macrocíclicos , Glicina/química , Glicina/análogos & derivados , Glicina/metabolismo , Péptidos de Penetración Celular/química , Péptidos de Penetración Celular/metabolismo , Imidazoles/química , Humanos , Hidrocarburos Aromáticos con Puentes/química , Hidrocarburos Aromáticos con Puentes/metabolismo , Adamantano/química , Adamantano/análogos & derivados , Membrana Celular/metabolismo , Membrana Celular/química , Transporte Biológico
5.
Science ; 383(6683): 622-629, 2024 Feb 09.
Artículo en Inglés | MEDLINE | ID: mdl-38271490

RESUMEN

Paclitaxel is a well known anticancer compound. Its biosynthesis involves the formation of a highly functionalized diterpenoid core skeleton (baccatin III) and the subsequent assembly of a phenylisoserinoyl side chain. Despite intensive investigation for half a century, the complete biosynthetic pathway of baccatin III remains unknown. In this work, we identified a bifunctional cytochrome P450 enzyme [taxane oxetanase 1 (TOT1)] in Taxus mairei that catalyzes an oxidative rearrangement in paclitaxel oxetane formation, which represents a previously unknown enzyme mechanism for oxetane ring formation. We created a screening strategy based on the taxusin biosynthesis pathway and uncovered the enzyme responsible for the taxane oxidation of the C9 position (T9αH1). Finally, we artificially reconstituted a biosynthetic pathway for the production of baccatin III in tobacco.


Asunto(s)
Alcaloides , Sistema Enzimático del Citocromo P-450 , Ingeniería Metabólica , Paclitaxel , Proteínas de Plantas , Taxoides , Taxus , Alcaloides/biosíntesis , Alcaloides/genética , Hidrocarburos Aromáticos con Puentes/química , Hidrocarburos Aromáticos con Puentes/metabolismo , Éteres Cíclicos/química , Éteres Cíclicos/metabolismo , Paclitaxel/biosíntesis , Taxoides/metabolismo , Taxus/enzimología , Taxus/genética , Sistema Enzimático del Citocromo P-450/química , Sistema Enzimático del Citocromo P-450/genética , Proteínas de Plantas/química , Proteínas de Plantas/genética
6.
Sci Rep ; 13(1): 22870, 2023 12 18.
Artículo en Inglés | MEDLINE | ID: mdl-38129448

RESUMEN

A mutant deficient in polynucleotide phosphorylase (PNPase) activity was previously constructed in Enterococcus faecalis 14; a strain producing a leaderless two-peptide enterocin DD14 (EntDD14). Here, we examined the impact of the absence of PNPase on the expression and synthesis of EntDD14, at the transcriptional and functional levels. As result, EntDD14 synthesis augmented in line with the growth curve, reaching a two- to fourfold increase in the ΔpnpA mutant compared to the E. faecalis 14 wild-type strain (WT). EntDD14 synthesis has reached its highest level after 9 h of growth in both strains. Notably, high expression level of the ddABCDEFGHIJ cluster was registered in ΔpnpA mutant. Transcriptional and in silico analyses support the existence of ddAB and ddCDEFGHIJ independent transcripts, and analysis of the fate of ddAB and ddCDEFGHIJ mRNAs indicated that the differences in mRNA levels and the high EntDD14 activity are likely due to a better stability of the two transcripts in the ΔpnpA mutant, which should result in a higher translation efficiency of the ddAB EntDD14 structural genes and their other protein determinants. Consequently, this study shows a potential link between the mRNA stability and EntDD14 synthesis, secretion and immunity in a genetic background lacking PNPase.


Asunto(s)
Bacteriocinas , Bacteriocinas/genética , Bacteriocinas/metabolismo , Enterococcus faecalis/genética , Enterococcus faecalis/metabolismo , Hidrocarburos Aromáticos con Puentes/metabolismo , Estabilidad del ARN/genética
7.
Hepatology ; 77(4): 1228-1240, 2023 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-35993369

RESUMEN

BACKGROUND AND AIMS: Janus kinase 2 (JAK2) signaling is increased in human and experimental liver fibrosis with portal hypertension. JAK2 inhibitors, such as pacritinib, are already in advanced clinical development for other indications and might also be effective in liver fibrosis. Here, we investigated the antifibrotic role of the JAK2 inhibitor pacritinib on activated hepatic stellate cells (HSCs) in vitro and in two animal models of liver fibrosis in vivo . APPROACH AND RESULTS: Transcriptome analyses of JAK2 in human livers and other targets of pacritinib have been shown to correlate with profibrotic factors. Although transcription of JAK2 correlated significantly with type I collagen expression and other profibrotic genes, no correlation was observed for interleukin-1 receptor-associated kinase and colony-stimulating factor 1 receptor. Pacritinib decreased gene expression of fibrosis markers in mouse primary and human-derived HSCs in vitro . Moreover, pacritinib decreased the proliferation, contraction, and migration of HSCs. C 57 BL/6J mice received ethanol in drinking water (16%) or Western diet in combination with carbon tetrachloride intoxication for 7 weeks to induce alcoholic or nonalcoholic fatty liver disease. Pacritinib significantly reduced liver fibrosis assessed by gene expression and Sirius red staining, as well as HSC activation assessed by alpha-smooth muscle actin immunostaining in fibrotic mice. Furthermore, pacritinib decreased the gene expression of hepatic steatosis markers in experimental alcoholic liver disease. Additionally, pacritinib protected against liver injury as assessed by aminotransferase levels. CONCLUSIONS: This study demonstrates that the JAK2 inhibitor pacritinib may be promising for the treatment of alcoholic and nonalcoholic liver fibrosis and may be therefore relevant for human pathology.


Asunto(s)
Janus Quinasa 2 , Cirrosis Hepática , Humanos , Ratones , Animales , Janus Quinasa 2/metabolismo , Cirrosis Hepática/patología , Hígado/patología , Hidrocarburos Aromáticos con Puentes/metabolismo , Hidrocarburos Aromáticos con Puentes/farmacología , Hidrocarburos Aromáticos con Puentes/uso terapéutico , Fibrosis , Células Estrelladas Hepáticas/metabolismo
8.
Curr Microbiol ; 79(7): 191, 2022 May 13.
Artículo en Inglés | MEDLINE | ID: mdl-35552837

RESUMEN

Candida albicans is the most common fungal pathogen in hospital-acquired infections, which is extremely harmful to health. The increasing fungal infections is requiring the rapid development of novel antifungal agents. In this study, the antimicrobial activity of CHQS, an enterocin isolated from Enterococcus faecalis TG2 against C. albicans was confirmed by the minimum inhibitory concentration, minimum fungicidal concentration, and time-kill curve. Aniline blue and calcofluor white staining methods showed that CHQS remarkably affected ß-1,3-glucan and chitin cell wall components and made cell wall more vulnerable. The C. albicans cell wall rupture and intracellular vacuolation were observed by TEM and SEM. Moreover, CHQS induced the accumulation of intracellular reactive oxygen species and decreased mitochondrial membrane potential. These results suggested that CHQS might have a complex multi-target antimicrobial mechanism against C. albicans. In addition, the use of CHQS combined with amphotericin B showed synergistic antimicrobial effects against C. albicans. In conclusion, enterocin CHQS, a natural product with antimicrobial effect, might has a bright future for the development of new antifungal drugs.


Asunto(s)
Antifúngicos , Candida albicans , Antibacterianos/farmacología , Antifúngicos/metabolismo , Antifúngicos/farmacología , Hidrocarburos Aromáticos con Puentes/metabolismo , Hidrocarburos Aromáticos con Puentes/farmacología , Pruebas de Sensibilidad Microbiana
9.
Int J Mol Sci ; 22(23)2021 Nov 28.
Artículo en Inglés | MEDLINE | ID: mdl-34884682

RESUMEN

Bacteriocins synthesis is initiated from an inactive precursor, which is composed of an N-terminal leader peptide attached to a C-terminal pro-peptide. However, leaderless bacteriocins (LLB) do not possess this N-terminal leader peptide nor undergo post-translational modifications. These atypical bacteriocins are observed to be immediately active after their translation in the cytoplasm. However, although considered to be simple, the biosynthetic pathway of LLB remains to be fully understood. Enterocin DD14 (EntDD14) is a two-peptide LLB produced by Enterococcus faecalis 14, which is a strain isolated from meconium. In silico analysis of DNA encoding EntDD14 located a cluster of 10 genes ddABCDEFGHIJ, where ddE and ddF encode the peculiar DdE and DdF proteins, carrying pleckstrin homology (PH) domains. These modules are quite common in Eucarya proteins and are known to be involved in intracellular signaling or cytoskeleton organization. To elucidate their role within the EntDD14 genetic determinants, we constructed deletion mutants of the ddE and ddF genes. As a result, the mutants were unable to export EntDD14 outside of the cytoplasm even though there was a clear expression of structural genes ddAB encoding EntDD14, and genes ddHIJ encoding an ABC transporter. Importantly, in these mutant strains (ΔddE and ΔddF), EntDD14 was detected by mass spectrometry in the intracellular soluble fraction exerting, upon its accumulation, a toxic effect on the producing strain as revealed by cell-counting and confocal microscopy analysis. Taken together, these results clearly indicate that PH domain-containing proteins, such as DdE and DdF, are involved in the transport of the leaderless two-peptide EntDD14.


Asunto(s)
Bacteriocinas/metabolismo , Dominios Homólogos a Pleckstrina , Bacteriocinas/genética , Hidrocarburos Aromáticos con Puentes/metabolismo , Simulación por Computador , Enterococcus faecalis , Operón
10.
Commun Biol ; 4(1): 1076, 2021 09 14.
Artículo en Inglés | MEDLINE | ID: mdl-34521989

RESUMEN

Lysine-selective molecular tweezers are promising drug candidates against proteinopathies, viral infection, and bacterial biofilm. Despite demonstration of their efficacy in multiple cellular and animal models, important questions regarding their mechanism of action, including cell penetrance and intracellular distribution, have not been answered to date. The main impediment to answering these questions has been the low intrinsic fluorescence of the main compound tested to date, called CLR01. Here, we address these questions using new fluorescently labeled molecular tweezers derivatives. We show that these compounds are internalized in neurons and astrocytes, at least partially through dynamin-dependent endocytosis. In addition, we demonstrate that the molecular tweezers concentrate rapidly in acidic compartments, primarily lysosomes. Accumulation of molecular tweezers in lysosomes may occur both through the endosomal-lysosomal pathway and via the autophagy-lysosome pathway. Moreover, by visualizing colocalization of molecular tweezers, lysosomes, and tau aggregates we show that lysosomes likely are the main site for the intracellular anti-amyloid activity of molecular tweezers. These findings have important implications for the mechanism of action of molecular tweezers in vivo, explaining how administration of low doses of the compounds achieves high effective concentrations where they are needed, and supporting the development of these compounds as drugs for currently cureless proteinopathies.


Asunto(s)
Astrocitos/metabolismo , Hidrocarburos Aromáticos con Puentes/metabolismo , Endosomas/metabolismo , Lisina/metabolismo , Lisosomas/metabolismo , Neuronas/metabolismo , Organofosfatos/metabolismo , Animales , Autofagia/efectos de los fármacos , Línea Celular Tumoral , Humanos , Ratones , Ratones Endogámicos C57BL
11.
J Photochem Photobiol B ; 223: 112284, 2021 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-34450362

RESUMEN

In the present work, we evaluated the supramolecular interactions between three photosensitizers, namely toluidine blue O (TBO, positively charged) and two fatty acid conjugates of 6 and 14 carbon atoms chain lengths (TBOC6 and TBOC14), with human serum albumin (HSA) and the macrocycle cucurbit[7]uril (CB[7]), alone or in combination within a biosupramolecular system as potential carriers of photosensitizers for Photodynamic therapy (PDT). Binding studies were carried out using photophysical and calorimetric techniques and accompanied with molecular docking simulations. Amphiphilic photosensitizers, particularly TBOC14, showed stronger binding to HSA and (CB[7]). Comparing the different delivery systems, (CB[7]) had a marginal effect on cell uptake and phototoxicity in HeLa cells, while HSA showed enhanced cell uptake with phototoxicities that depended on the photosensitizer. Despite low cell uptake, the combination of both (CB[7]) and HSA was the most phototoxic, which illustrates the potential of combining these systems for PDT applications.


Asunto(s)
Hidrocarburos Aromáticos con Puentes/química , Imidazoles/química , Fármacos Fotosensibilizantes/química , Albúmina Sérica Humana/química , Sitios de Unión , Hidrocarburos Aromáticos con Puentes/metabolismo , Supervivencia Celular/efectos de los fármacos , Ácidos Grasos/química , Células HeLa , Humanos , Imidazoles/metabolismo , Simulación del Acoplamiento Molecular , Fotoquimioterapia , Fármacos Fotosensibilizantes/metabolismo , Fármacos Fotosensibilizantes/farmacología , Unión Proteica , Albúmina Sérica Humana/metabolismo , Cloruro de Tolonio/química , Cloruro de Tolonio/metabolismo
12.
Mar Drugs ; 19(8)2021 Aug 12.
Artículo en Inglés | MEDLINE | ID: mdl-34436297

RESUMEN

A new versatile actinobacterium designated as strain NJES-13 was isolated from the feces of the Antarctic emperor penguin. This new isolate was found to produce two active gephyromycin analogues and bioflocculanting exopolysaccharides (EPS) metabolites. Phylogenetic analysis based on pairwise comparison of 16S rRNA gene sequences showed that strain NJES-13 was closely related to Mobilicoccus pelagius Aji5-31T with a gene similarity of 95.9%, which was lower than the threshold value (98.65%) for novel species delineation. Additional phylogenomic calculations of the average nucleotide identity (ANI, 75.9-79.1%), average amino acid identity (AAI, 52.4-66.9%) and digital DNA-DNA hybridization (dDDH, 18.6-21.9%), along with the constructed phylogenomic tree based on the up-to-date bacterial core gene (UBCG) set from the bacterial genomes, unequivocally separated strain NJES-13 from its close relatives within the family Dermatophilaceae. Hence, it clearly indicated that strain NJES-13 represented a putative new actinobacterial species isolated from the gut microbiota of mammals inhabiting the Antarctic. The obtained complete genome of strain NJES-13 consisted of a circular 3.45 Mb chromosome with a DNA G+C content of 67.0 mol%. Furthering genome mining of strain NJES-13 showed the presence of five biosynthetic gene clusters (BGCs) including one type III PKS responsible for the biosynthesis of the core of gephyromycins, and a series of genes encoding for bacterial EPS biosynthesis. Thus, based on the combined phylogenetic and active metabolites characterization presented in this study, we confidently conclude that strain NJES-13 is a novel, fresh actinobacterial candidate to produce active gephyromycins and microbial bioflocculanting EPS, with potential pharmaceutical, environmental and biotechnological implications.


Asunto(s)
Actinobacteria/genética , Antraquinonas/metabolismo , Hidrocarburos Aromáticos con Puentes/metabolismo , Spheniscidae , Animales , Regiones Antárticas , Organismos Acuáticos , Técnicas de Tipificación Bacteriana , Heces/microbiología , Humanos , Filogenia , Fitoterapia , ARN Ribosómico 16S/genética
13.
ACS Appl Mater Interfaces ; 13(33): 39719-39729, 2021 Aug 25.
Artículo en Inglés | MEDLINE | ID: mdl-34392680

RESUMEN

In this work, cucurbiturils (CBs), a class of macrocyclic supramolecules, were observed to have an interesting peroxidase-like activity, which is metal-free, substrate-specific, thermophilic, acidophilic, and insensitive to ionic strength. By coating CBs on enzyme-encapsulated zeolitic imidazolate framework-8 (ZIF-8), a composite nanozyme was constructed, which retains the catalytic ability of CBs and enzymes and makes them cascade. On addition of the substrate, i.e., the detection target, a highly efficient cascade catalysis can be launched in all the spatial directions to generate sensitive and visible signals. Convenient detection of glucose and cholesterol as models is thereby achieved. More importantly, we have also successfully constructed a composite nanozyme-based sensor array (6 × 8 wells) and thereby achieved simultaneous colorimetric analysis of multiple samples. The concept and successful practice of the construction of the unique core-shell supramolecule/biomolecule@nanomaterial architecture provide the possibility to fabricate next-generation multifunctional materials and create new applications by integrating their unique functions.


Asunto(s)
Hidrocarburos Aromáticos con Puentes/química , Imidazoles/química , Nanocompuestos/química , Peroxidasas/química , Zeolitas/química , Técnicas Biosensibles , Hidrocarburos Aromáticos con Puentes/metabolismo , Catálisis , Colorimetría , Colorantes Fluorescentes/química , Glucosa Oxidasa/química , Glucosa Oxidasa/metabolismo , Peróxido de Hidrógeno/química , Imidazoles/metabolismo , Simulación del Acoplamiento Molecular , Oxidación-Reducción , Peroxidasas/metabolismo , Impresión Tridimensional
14.
ACS Appl Mater Interfaces ; 13(29): 33962-33968, 2021 Jul 28.
Artículo en Inglés | MEDLINE | ID: mdl-34279919

RESUMEN

There is a challenge in supramolecular chemotherapy for constructing a system equipped with both sufficient protection and high-efficiency release of drugs. To this end, a new strategy of an activatable host-guest conjugate with self-inclusion property is proposed. Based on the binding affinity gain of intramolecular host-guest self-inclusion, an activatable host-guest conjugate was designed, bearing cucurbit[7]uril as the host, an alkyl ammonium moiety as the guest, and the redox-responsive disulfide linkage. Oxaliplatin, a clinical antitumor drug, could be firmly encapsulated by the activatable host-guest conjugate to form the supramolecular drug with high stability. Moreover, oxaliplatin loaded in the activatable host-guest conjugate could be almost completely released by self-inclusion triggered by glutathione in a tumor microenvironment, thus exhibiting comparable antitumor bioactivity with naked oxaliplatin through in vitro cell experiments. It is highly anticipated that this line of research may open new horizons for programmable and on-demand supramolecular chemotherapy with high antitumor efficiency.


Asunto(s)
Antineoplásicos/farmacología , Hidrocarburos Aromáticos con Puentes/química , Portadores de Fármacos/química , Imidazoles/química , Oxaliplatino/farmacología , Antineoplásicos/química , Hidrocarburos Aromáticos con Puentes/metabolismo , Supervivencia Celular/efectos de los fármacos , Portadores de Fármacos/metabolismo , Liberación de Fármacos , Ensayos de Selección de Medicamentos Antitumorales , Glutatión/metabolismo , Humanos , Imidazoles/metabolismo , Células MCF-7 , Oxaliplatino/química , Microambiente Tumoral/fisiología
15.
J Chem Theory Comput ; 17(8): 5287-5300, 2021 Aug 10.
Artículo en Inglés | MEDLINE | ID: mdl-34260233

RESUMEN

Computational capabilities are rapidly increasing, primarily because of the availability of GPU-based architectures. This creates unprecedented simulative possibilities for the systematic and robust computation of thermodynamic observables, including the free energy of a drug binding to a target. In contrast to calculations of relative binding free energy, which are nowadays widely exploited for drug discovery, we here push the boundary of computing the binding free energy and the potential of mean force. We introduce a novel protocol that leverages enhanced sampling, machine learning, and ad hoc algorithms to limit human intervention, computing time, and free parameters in free energy calculations. We first validate the method on a host-guest system, and then we apply the protocol to glycogen synthase kinase 3 beta, a protein kinase of pharmacological interest. Overall, we obtain a good correlation with experimental values in relative and absolute terms. While we focus on protein-ligand binding, the strategy is of broad applicability to any complex event that can be described with a path collective variable. We systematically discuss key details that influence the final result. The parameters and simulation settings are available at PLUMED-NEST to allow full reproducibility.


Asunto(s)
Aprendizaje Automático , Hidrocarburos Aromáticos con Puentes/química , Hidrocarburos Aromáticos con Puentes/metabolismo , Glucógeno Sintasa Quinasa 3 beta/química , Glucógeno Sintasa Quinasa 3 beta/metabolismo , Imidazoles/química , Imidazoles/metabolismo , Ligandos , Simulación de Dinámica Molecular , Unión Proteica , Termodinámica
16.
Molecules ; 26(10)2021 May 12.
Artículo en Inglés | MEDLINE | ID: mdl-34065782

RESUMEN

Taxol is one of the most effective anticancer drugs in the world that is widely used in the treatments of breast, lung and ovarian cancer. The elucidation of the taxol biosynthetic pathway is the key to solve the problem of taxol supply. So far, the taxol biosynthetic pathway has been reported to require an estimated 20 steps of enzymatic reactions, and sixteen enzymes involved in the taxol pathway have been well characterized, including a novel taxane-10ß-hydroxylase (T10ßOH) and a newly putative ß-phenylalanyl-CoA ligase (PCL). Moreover, the source and formation of the taxane core and the details of the downstream synthetic pathway have been basically depicted, while the modification of the core taxane skeleton has not been fully reported, mainly concerning the developments from diol intermediates to 2-debenzoyltaxane. The acylation reaction mediated by specialized Taxus BAHD family acyltransferases (ACTs) is recognized as one of the most important steps in the modification of core taxane skeleton that contribute to the increase of taxol yield. Recently, the influence of acylation on the functional and structural diversity of taxanes has also been continuously revealed. This review summarizes the latest research advances of the taxol biosynthetic pathway and systematically discusses the acylation reactions supported by Taxus ACTs. The underlying mechanism could improve the understanding of taxol biosynthesis, and provide a theoretical basis for the mass production of taxol.


Asunto(s)
Aciltransferasas/metabolismo , Antineoplásicos/metabolismo , Paclitaxel/biosíntesis , Extractos Vegetales/biosíntesis , Taxus/química , Taxus/enzimología , Acilación , Aciltransferasas/genética , Secuencia de Aminoácidos , Vías Biosintéticas , Hidrocarburos Aromáticos con Puentes/metabolismo , Ligasas/metabolismo , Oxigenasas de Función Mixta/metabolismo , Taxoides/metabolismo , Taxus/clasificación , Taxus/genética , Transcriptoma
17.
J Am Chem Soc ; 143(15): 5605-5609, 2021 04 21.
Artículo en Inglés | MEDLINE | ID: mdl-33834778

RESUMEN

Hirsutellones are fungal natural products containing a macrocyclic para-cyclophane connected to a decahydrofluorene ring system. We have elucidated the biosynthetic pathway for pyrrocidine B (3) and GKK1032 A2 (4). Two small hypothetical proteins, an oxidoreductase and a lipocalin-like protein, function cooperatively in the oxidative cyclization of the cyclophane, while an additional hypothetical protein in the pyrrocidine pathway catalyzes the exo-specific cycloaddition to form the cis-fused decahydrofluorene.


Asunto(s)
Productos Biológicos/metabolismo , Hidrocarburos Aromáticos con Puentes/metabolismo , Hongos/química , Compuestos Heterocíclicos de 4 o más Anillos/metabolismo , Pirrolidinonas/metabolismo , Acremonium/química , Acremonium/metabolismo , Productos Biológicos/química , Hidrocarburos Aromáticos con Puentes/química , Catálisis , Reacción de Cicloadición , Hongos/metabolismo , Compuestos Heterocíclicos de 4 o más Anillos/química , Hypocreales/química , Hypocreales/metabolismo , Conformación Molecular , Oxidación-Reducción , Oxidorreductasas/metabolismo , Pirrolidinonas/química , Estereoisomerismo
18.
Bioconjug Chem ; 32(3): 507-511, 2021 03 17.
Artículo en Inglés | MEDLINE | ID: mdl-33683100

RESUMEN

Many cellular processes in living organisms are regulated by complex regulatory networks, built from noncovalent interactions between relatively few proteins that perform their functions by switching between homo- and heterooligomeric assemblies or mono- and bivalent states. Herein, we demonstrate that the conjugation of a 4,4'-bipyridinium scaffold to the basic region of the GCN4 bZip transcription factor can be exploited to control the dimerization of the conjugate by formation of a supramolecular complex with cucurbit[8]uril. Importantly, this supramolecular complex is able to specifically recognize its target dsDNA, and this binding can be reversibly switched by the application of external stimuli.


Asunto(s)
Hidrocarburos Aromáticos con Puentes/metabolismo , ADN/metabolismo , Imidazoles/metabolismo , Péptidos/metabolismo , Compuestos de Piridinio/química , Secuencia de Aminoácidos , Sitios de Unión , Dimerización , Péptidos/química , Homología de Secuencia de Aminoácido
19.
Angew Chem Int Ed Engl ; 60(20): 11196-11200, 2021 05 10.
Artículo en Inglés | MEDLINE | ID: mdl-33580548

RESUMEN

Regulation of specific protein function is of great importance for both research and therapeutic development. Many small or large molecules have been developed to control specific protein function, but there is a lack of a universal approach to regulate the function of any given protein. We report a general host-guest molecular recognition approach involving modification of the protein functional surfaces with genetically encoded unnatural amino acids bearing guest side chains that can be specifically recognized by cucurbit[7]uril. Using two enzymes and a cytokine as models, we showed that the activity of proteins bearing unnatural amino acid could be turned off by host molecule binding, which blocked its functional binding surface. Protein activity can be switched back by treatment with a competitive guest molecule. Our approach provides a general tool for reversibly regulating protein function through molecular recognition and can be expected to be valuable for studying protein functions.


Asunto(s)
Aminoácidos/análisis , Hidrocarburos Aromáticos con Puentes/metabolismo , Imidazoles/metabolismo , Proteínas/metabolismo , Aminoácidos/genética , Hidrocarburos Aromáticos con Puentes/síntesis química , Hidrocarburos Aromáticos con Puentes/química , Imidazoles/síntesis química , Imidazoles/química , Sustancias Macromoleculares/síntesis química , Sustancias Macromoleculares/química , Sustancias Macromoleculares/metabolismo , Estructura Molecular , Proteínas/química
20.
Mol Pharmacol ; 99(1): 78-91, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33109687

RESUMEN

Tetramethylenedisulfotetramine (TETS) is a so-called "caged" convulsant that is responsible for thousands of accidental and malicious poisonings. Similar to the widely used GABA receptor type A (GABAA) antagonist picrotoxinin, TETS has been proposed to bind to the noncompetitive antagonist (NCA) site in the pore of the receptor channel. However, the TETS binding site has never been experimentally mapped, and we here set out to gain atomistic level insights into how TETS inhibits the human α 2 ß 3 γ 2 GABAA receptor. Using the Rosetta molecular modeling suite, we generated three homology models of the α 2 ß 3 γ 2 receptor in the open, desensitized, and closed/resting state. Three different ligand-docking algorithms (RosettaLigand, Glide, and Swissdock) identified two possible TETS binding sites in the channel pore. Using a combination of site-directed mutagenesis, electrophysiology, and modeling to probe both sites, we demonstrate that TETS binds at the T6' ring in the closed/resting-state model, in which it shows perfect space complementarity and forms hydrogen bonds or makes hydrophobic interactions with all five pore-lining threonine residues of the pentameric receptor. Mutating T6' in either the α 2 or ß 3 subunit reduces the IC50 of TETS by ∼700-fold in whole-cell patch-clamp experiments. TETS is thus interacting at the NCA site in the pore of the GABAA receptor at a location that is overlapping but not identical to the picrotoxinin binding site. SIGNIFICANCE STATEMENT: Our study identifies the binding site of the highly toxic convulsant tetramethylenedisulfotetramine (TETS), which is classified as a threat agent by the World Health Organization. Using a combination of homology protein modeling, ligand docking, site-directed mutagenesis, and electrophysiology, we show that TETS is binding in the pore of the α2ß3γ2 GABA receptor type A receptor at the so-called T6' ring, wherein five threonine residues line the permeation pathway of the pentameric receptor channel.


Asunto(s)
Hidrocarburos Aromáticos con Puentes/metabolismo , Convulsivantes/metabolismo , Receptores de GABA-A/metabolismo , Sitios de Unión/efectos de los fármacos , Sitios de Unión/fisiología , Hidrocarburos Aromáticos con Puentes/química , Convulsivantes/química , Relación Dosis-Respuesta a Droga , Humanos , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Receptores de GABA-A/química
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