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1.
Viruses ; 14(2)2022 02 06.
Artículo en Inglés | MEDLINE | ID: mdl-35215924

RESUMEN

The production of the aquaculture industry has increased to be equal to that of the world fisheries in recent years. However, aquaculture production faces threats such as infectious diseases. Betanodaviruses induce a neurological disease that affects fish species worldwide and is caused by nervous necrosis virus (NNV). NNV has a nude capsid protecting a bipartite RNA genome that consists of molecules RNA1 and RNA2. Four NNV strains distributed worldwide are discriminated according to sequence homology of the capsid protein encoded by RNA2. Since its first description over 30 years ago, the virus has expanded and reassortant strains have appeared. Preventive treatments prioritize the RGNNV (red-spotted grouper nervous necrosis virus) strain that has the highest optimum temperature for replication and the broadest range of susceptible species. There is strong concern about the spreading of NNV in the mariculture industry through contaminated diet. To surveil natural reservoirs of NNV in the western Mediterranean Sea, we collected invertebrate species in 2015 in the Alboran Sea. We report the detection of the RGNNV strain in two species of cephalopod mollusks (Alloteuthis media and Abralia veranyi), and in one decapod crustacean (Plesionika heterocarpus). According to RNA2 sequences obtained from invertebrate species and reported to date in the Mediterranean Sea, the strain RGNNV is predominant in this semienclosed sea. Neither an ecosystem- nor host-driven distribution of RGNNV were observed in the Mediterranean basin.


Asunto(s)
Decapodiformes/virología , Reservorios de Enfermedades/veterinaria , Nodaviridae/aislamiento & purificación , Pandalidae/virología , Animales , Reservorios de Enfermedades/virología , Peces/clasificación , Peces/virología , Genoma Viral/genética , Mar Mediterráneo , Nodaviridae/clasificación , Nodaviridae/genética , Filogenia , ARN Viral/genética , Mariscos/clasificación , Mariscos/virología
2.
PLoS One ; 16(8): e0255110, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34339426

RESUMEN

The present study aims to apply a DNA barcoding tool through amplifying two mitochondrial candidate genes i.e., COI and 16S rRNA for accurate identification of fish, aquatic molluscs and crustaceans of Sundarbans mangrove wetland, to build a reference library of fish and shellfishes of this unique ecosystems. A total of 185 mitochondrial COI barcode sequences and 59 partial sequences of the 16S rRNA gene were obtained from 120 genera, 65 families and 21 orders of fish, crustaceans and molluscs. The collected samples were first identified by examining morphometric characteristics and then assessed by DNA barcoding. The COI and 16S rRNA sequences of fishes and crustaceans were clearly discriminated among genera in their phylogenies. The average Kimura two-parameter (K2P) distances of COI barcode sequences within species, genera, and families of fishes are 1.57±0.06%, 15.16±0.23%, and 17.79±0.02%, respectively, and for 16S rRNA sequences, these values are 1.74±.8%, 0.97±.8%, and 4.29±1.3%, respectively. The minimum and maximum K2P distance based divergences in COI sequences of fishes are 0.19% and 36.27%, respectively. In crustaceans, the K2P distances within genera, families, and orders are 1.4±0.03%, 17.73±0.15%, and 22.81±0.02%, respectively and the minimum and maximum divergences are 0.2% and 33.93%, respectively. Additionally, the present study resolves the misidentification of the mud crab species of the Sundarbans as Scylla olivacea which was previously stated as Scylla serrata. In case of molluscs, values of interspecific divergence ranges from 17.43% to 66.3% in the barcoded species. The present study describes the development of a molecular and morphometric cross-referenced inventory of fish and shellfish of the Sundarbans. This inventory will be useful in future biodiversity studies and in forming future conservation plan.


Asunto(s)
Avicennia , Código de Barras del ADN Taxonómico , Ecosistema , Peces/clasificación , Peces/genética , Agua de Mar , Mariscos/clasificación , Animales , Secuencia de Bases , Complejo IV de Transporte de Electrones/genética , Variación Genética , Geografía , Moluscos/genética , Filogenia , ARN Ribosómico 16S/genética
3.
Molecules ; 26(11)2021 Jun 03.
Artículo en Inglés | MEDLINE | ID: mdl-34205146

RESUMEN

The objective of the present study was to investigate the proximate composition, antiradical properties and hepatoprotective activity of three species of shellfish, Corbicula japonica, Spisula sachalinensis, and Anadara broughtonii, from the coastal areas of Far East Russia. Biologically active peptides such as taurine (3.74 g/100 g protein) and ornithine (2.12 g/100 g protein) have been found in the tissues of A. broughtonii. C. japonica contains a high amount of ornithine (5.57 g/100 g protein) and taurine (0.85 g/100 g protein). The maximum DPPH and ABTS radical scavenging activity (36.0 µg ascorbic acid/g protein and 0.68 µmol/Trolox equiv/g protein, respectively) was determined for the tissue of C. japonica. The protein and peptide molecular weight distribution of the shellfish tissue water extracts was investigated using HPLC. It was found that the amount of low molecular weight proteins and peptides were significantly and positively correlated with radical scavenging activity (Pearson's correlation coefficient = 0.96), while the amount of high molecular weight proteins negatively correlated with radical scavenging activity (Pearson's correlation coefficient = -0.86). Hepatoprotective activity, measured by the survival rate of HepG2 hepatocytes after cotreatment with t-BHP, was detected for C. japonica. The highest protection (95.3 ± 2.4%) was achieved by the cold water extract of C. japonica at the concentration of 200 mg/mL. Moreover, oral administration of hot water extract of C. japonica to rats before the treatment with CCl4 exhibited a markedly protective effect by lowering serum levels of ALT and AST, inhibiting the changes in biochemical parameters of functional state of rat liver, including MDA, SOD, GSH and GST.


Asunto(s)
Antioxidantes/farmacología , Arcidae/química , Enfermedad Hepática Inducida por Sustancias y Drogas/prevención & control , Corbicula/química , Hepatocitos/citología , Mariscos/análisis , Spisula/química , terc-Butilhidroperóxido/efectos adversos , Administración Oral , Animales , Antioxidantes/química , Tetracloruro de Carbono/efectos adversos , Supervivencia Celular , Cromatografía Líquida de Alta Presión , Modelos Animales de Enfermedad , Células Hep G2 , Hepatocitos/efectos de los fármacos , Humanos , Masculino , Peso Molecular , Ornitina/aislamiento & purificación , Ratas , Federación de Rusia , Mariscos/clasificación , Taurina/aislamiento & purificación
4.
Food Chem Toxicol ; 141: 111386, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32376337

RESUMEN

Paralytic shellfish poisoning (PSP) episodes cause important economic impacts due to closure of shellfish production areas in order to protect human health. These closures, if are frequent and persistent, can seriously affect shellfish producers and the seafood industry, among others. In this study, we have developed an alternative processing method for bivalves with PSP content above the legal limit, which allows reducing toxicity to acceptable levels. A modification of the PSP detoxifying procedure stablished by Decision 96/77/EC of the European Union in Acanthocardia tuberculata, was developed and implemented for PSP elimination in other bivalves species. The procedure was applied to 6 batches of mussels, 2 batches of clams and 2 batches of scallops, achieving detoxification rates of around 85%. A viable industrial protocol which allows the transformation of a product at risk into a safe product was developed. Although a significant reduction was obtained, in a sample circa 9000 µg STX diHCl equiv/kg, the final toxin level in these highly toxic mussels did not fall below the European limit. The processing protocol described may be applied efficiently to mussels, clams and scallops and it may be a major solution to counteract the closure of shellfish harvesting areas, especially if persistent.


Asunto(s)
Toxinas Marinas/aislamiento & purificación , Intoxicación por Mariscos/metabolismo , Mariscos/análisis , Animales , Toxinas Marinas/metabolismo , Mariscos/clasificación , Especificidad de la Especie
5.
PLoS One ; 15(3): e0229512, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32163430

RESUMEN

Seafood mislabeling occurs in a wide range of seafood products worldwide, resulting in public distrust, economic fraud, and health risks for consumers. We quantified the extent of shrimp mislabeling in coastal and inland North Carolina. We used standard DNA barcoding procedures to determine the species identity of 106 shrimp sold as "local" by 60 vendors across North Carolina. Thirty-four percent of the purchased shrimp was mislabeled, and surprisingly the percentage did not differ significantly between coastal and inland counties. One third of product incorrectly marketed as "local" was in fact whiteleg shrimp: an imported and globally farmed species native to the eastern Pacific, not found in North Carolina waters. In addition to the negative ecosystem consequences of shrimp farming (e.g., the loss of mangrove forests and the coastal buffering they provide), North Carolina fishers-as with local fishers elsewhere-are negatively impacted when vendors label farmed, frozen, and imported shrimp as local, fresh, and wild-caught.


Asunto(s)
Acuicultura/ética , Acuicultura/métodos , Penaeidae/genética , Animales , Conservación de los Recursos Naturales/métodos , Código de Barras del ADN Taxonómico/métodos , Ecosistema , North Carolina , Penaeidae/clasificación , Alimentos Marinos/análisis , Alimentos Marinos/economía , Mariscos/análisis , Mariscos/clasificación
6.
Int J Food Sci Nutr ; 71(6): 693-705, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31986928

RESUMEN

The objective of the present study was to determine lipid content, fatty acid composition and the recommended daily portion of 13 fish species, nine bivalves, six crustacean, three echinoderm and three cephalopod species, from the Mediterranean Sea (Southern Italy). Fatty acids profile varied significantly among species (p < .05); polyunsaturated fatty acids represented an important proportion, with docosahexaenoic and eicosapentaenoic acids in the highest amount. A high n3/n6 ratio was found in all species (from 1.0 in body wall of Holothuria polii and H. tubulosa to 10.9 in Mytilus galloprovincialis). The lipid nutritional quality indices (atherogenic index, thrombogenicity index and hypocholesterolaemic/hypercholesterolaemic fatty acid ratio) showed crustaceans Parapaeneus longirostris, Plesionika martia, Melicertus kerathurus, Nephrops norvegicus, as likely to be more beneficial for the consumer health. This paper will be of practical value from a health perspective for populations who consume seafood and a powerful marketing tool for farmers.


Asunto(s)
Ácidos Docosahexaenoicos/análisis , Ácido Eicosapentaenoico/análisis , Ácidos Grasos/análisis , Valor Nutritivo , Ingesta Diaria Recomendada , Alimentos Marinos/clasificación , Mariscos/clasificación , Animales , Bivalvos/química , Cefalópodos/química , Crustáceos/química , Equinodermos/química , Humanos , Italia , Mar Mediterráneo
7.
Recent Pat Food Nutr Agric ; 11(1): 49-55, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-30599114

RESUMEN

BACKGROUND: DNA-based technologies are reliable authentication methods for food products, enabling the detection of fraud, non-intentional substitution and control of mislabeling. The Chilean blue mussel (Mytilus chilensis) is a seafood commercialized in Chile under different formats, including packages of frozen specimens. In this format, the valves of mussels are removed during processing, thus impeding identification of the product by the consumer due to the lack of external characters. OBJECTIVE: To assess the authenticity of frozen Chilean blue mussels commercialized in southern Chile, particularly in the town of Osorno. METHODS: Six commercial brands of frozen Chilean blue mussel were authenticated by the Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) method, based on the analysis of an 18S rDNA fragment. RESULTS: Restriction patterns obtained indicate that three brands (50%) proved to be 100% authentic, given that all specimens contained in the package were Chilean blue mussels. The other three brands (50%) contained specimens of other commercial mytilids, particularly the cholga mussel (Aulacomya ater), in a variable percentage (12.5-50%). CONCLUSION: This study based on the PCR-RFLP method provides evidence that Chilean blue mussels commercialized in a town located in southern Chile lack authenticity. This finding highlights the necessity for national producers to improve the production and/or packaging processes of this seafood. The authentication of commercial mussels is a matter of consumer interest and has been described in a recent patent on this issue that proposes an alternative methodology.


Asunto(s)
Comercio/normas , Etiquetado de Alimentos/normas , Fraude , Mytilus/genética , Reacción en Cadena de la Polimerasa/métodos , Polimorfismo de Longitud del Fragmento de Restricción , Mariscos/análisis , Animales , Chile , Embalaje de Alimentos , Congelación , Humanos , Patentes como Asunto , ARN Ribosómico 18S , Mariscos/clasificación
8.
Food Chem ; 219: 223-229, 2017 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-27765220

RESUMEN

Clams have long been a fisheries and aquaculture sector of great importance in Italy, the main resource of fisheries is the Chamelea gallina of indigenous origin, whereas clams breeding is supported almost entirely by the Tapes philippinarum, a species of Indo-Pacific origin. Bivalve molluscs quality depends mainly on the water quality, and then by a series of factors such as water temperature and salinity, gametogenic cycle, food availability, and environmental conditions, that affect the Condition Index. In this work crude extracts obtained from the edible part of Chamelea gallina and Tapes philippinarum were analyzed by a proteomic approach based on a two-dimensional gel electrophoresis followed by liquid chromatography-tandem mass spectrometry, in order to detect biomarkers useful for identification of the two kinds of clams and to assess their nutritional characteristics. As a result, four differentially expressed spots were found and identified, namely enolase, cyclophilin-A, ribosomal protein L13 and actin-1.


Asunto(s)
Bivalvos/química , Bivalvos/clasificación , Proteoma/análisis , Mariscos/clasificación , Animales , Biomarcadores/análisis , Cromatografía Liquida , Electroforesis en Gel Bidimensional , Italia , Océanos y Mares , Proteómica , Mariscos/análisis , Espectrometría de Masas en Tándem , Temperatura
9.
PLoS One ; 11(4): e0152627, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27099956

RESUMEN

Marine crabs of the genus Persephona Leach, 1817 are restricted to American waters of the western Atlantic and eastern Pacific Oceans. Subfamilial assignment of this taxon has varied between authors and its species composition remain in question. We conducted a comparative study based on morphology and molecular phylogenetics for all ten recognized species of Persephona, along with Iliacantha hancocki. We tested whether Persephona finneganae, P. lichtensteinii, and P. crinita represent a single species as suggested by some authors; whether specimens identified as P. punctata, P. mediterranea, and P. aquilonaris warrant treatment as separate species; and whether I. hancocki should be regarded as a junior synonym of P. subovata. Diagnostic morphological characters (of the carapace, chelipeds, and third maxillipeds) were used along with gonopod (male first pleopod 1) features and live coloration. The 16S rRNA and the Cytochrome Oxidase I (COI) (DNA barcoding) mitochondrial genes were used as molecular markers. Both morphological and molecular analyses revealed that putative specimens of P. crinita from Brazil and those assigned to P. finneganae were no different from specimens presently assignable to P. lichtensteinii. P. finneganae is regarded as a junior synonym of P. lichtensteinii, and we apply P. crinita only to specimens we examined from the Gulf of Mexico. Specimens from Brazil previously reported as P. crinita are herewith concluded to represent P. lichtensteinii. Additionally, P. townsendi is a junior synonym of P. orbicularis, Iliacantha hancocki is concluded to be a junior synonym of P. subovata, while P. aquilonaris and P. mediterranea are found to represent separate species. On the basis of our revisions, eight species of Persephona are considered valid, and the reported distribution for P. crinita is restricted.


Asunto(s)
Braquiuros/clasificación , Braquiuros/genética , Animales , Brasil , ADN Mitocondrial/genética , Evolución Molecular , Femenino , Genes Mitocondriales/genética , Masculino , México , Océano Pacífico , Filogenia , ARN Ribosómico 16S/genética , Mariscos/clasificación
10.
Food Chem ; 202: 302-8, 2016 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-26920298

RESUMEN

Two mitochondrial markers (cytochrome oxidase COI and 16S rDNA) were employed for species identification of commercial shellfish from two Mediterranean countries. New COI Barcodes were generated for six species: Pleoticus robustus, Metapenaeopsis barbata, Parapenaeus fissuroides, Hymenopenaeus debilis, Metapenaeus affinis and Sepia aculeata. Biodiversity of the seafood species analyzed was greater in Egypt, with nine crustacean and two cephalopod species found compared with only three crustaceans and three cephalopods in Spain. In total, 17.2% and 15.2% products were mislabeled in Egypt and Spain, respectively. Population decline is a problem for some of the substitute species. Others were exotic and/or invasive in exporters' regions. This study offers the first comparable study of shellfish traceability in these Mediterranean markets. The PCR-based method used in this study proved to be reliable, effective and, therefore, could be employed for routine seafood analysis.


Asunto(s)
Código de Barras del ADN Taxonómico/métodos , Reacción en Cadena de la Polimerasa/métodos , Mariscos/clasificación , Animales , ADN Ribosómico/genética , Egipto , Complejo IV de Transporte de Electrones/genética , Penaeidae/genética , ARN Ribosómico 16S/genética , Alimentos Marinos , España
11.
Rev Biol Trop ; 63(3): 639-46, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26666121

RESUMEN

Clams of the genus Donax are worldwide the dominating group of the invertebrate community on sandy beaches. They are primary consumers that provide a significant abundance and biomass to the ecosystem. In the Caribbean, Donax striatus has an important role for nature and human, nonetheless studies on the population dynamics of this beach clam are scarce and no information exists on secondary production of this species. Growth parameters and secondary production of D. striatus were estimated from February 2008 to November 2009 at Las Balsas beach, Northeastern Cuba, in order to provide basic information for management purposes. In each month 45 samples were taken by means of a PVC corer of 0.025 m2 area and sieved with a 1 mm mesh. Animals were measured and weighted with and without shell. A total of 5 471 specimens were collected during the sampling period. Shell length ranged from 2.7-33.3 mm. Growth parameters estimated from length frequency data were L∞ = 36.1 mm, K= 0.8/yr and t0= 0.2/yr. The growth performance resulted in values of Φ'= 3.02. Life span was 2.4 yrs and mortality rate was 3.07 /yr. In 2008, mean abundance of D. striatus ranged between 17.1 - 770.7 ind./m2. In 2009 the lowest mean abundance was 34.4 and the highest was 892.5 ind./m2. During 2009 biomass and production was more than twice higher in comparison with 2008. Individual production showed highest values in the 24 mm shell size (3.74 g/m2.yr) and 25 mm (0.71 g/m2.yr), considering mass with shell and without shell, respectively. During 2009 abundance of individuals with 15 mm shell length or more increased resulting in higher biomass and production, compared to 2008. Using the conversion factor of wet mass to ash free dry mass (AFDM), annual production ranged between 2.87-6.11 g AFDM/m2.yr, resulting in a turnover rate (P/B) between 5.11 and 3.47 in 2008 and 2009, respectively. The rapid growth and high turnover rate of D. striatus suggest a rapid recovery of the population. These results support the idea that this beach clam is an important resource at Las Balsas beach. Thus its exploitation must continue with caution, and only at the level of a recreational fishery.


Asunto(s)
Bivalvos/crecimiento & desarrollo , Mariscos/clasificación , Animales , Biomasa , Bivalvos/clasificación , Cuba , Explotaciones Pesqueras , Humanos , Densidad de Población , Dinámica Poblacional , Estaciones del Año
12.
Rev. biol. trop ; 63(3): 639-646, jul.-sep. 2015. tab, ilus
Artículo en Inglés | LILACS | ID: lil-778073

RESUMEN

Abstract:Clams of the genus Donaxare worldwide the dominating group of the invertebrate community on sandy beaches. They are primary consumers that provide a significant abundance and biomass to the ecosystem. In the Caribbean, Donax striatushas an important role for nature and human, nonetheless studies on the population dynamics of this beach clam are scarce and no information exists on secondary production of this species. Growth parameters and secondary production of D. striatuswere estimated from February 2008 to November 2009 at Las Balsas beach, Northeastern Cuba, in order to provide basic information for management purposes. In each month 45 samples were taken by means of a PVC corer of 0.025 m2 area and sieved with a 1 mm mesh. Animals were measured and weighted with and without shell. A total of 5 471 specimens were collected during the sampling period. Shell length ranged from 2.7-33.3 mm. Growth parameters estimated from length frequency data were Lm = 36.1 mm, K= 0.8/yr and t0 = 0.2/yr. The growth performance resulted in values of 0'= 3.02. Life span was 2.4 yrs and mortality rate was 3.07 /yr. In 2008, mean abundance of D. striatusranged between 17.1770.7 ind./m2. In 2009 the lowest mean abundance was 34.4 and the highest was 892.5 ind./m2. During 2009 biomass and production was more than twice higher in comparison with 2008. Individual production showed highest values in the 24 mm shell size (3.74 g/m2.yr) and 25 mm (0.71 g/m2.yr), considering mass with shell and without shell, respectively. During 2009 abundance of individuals with 15 mm shell length or more increased resulting in higher biomass and production, compared to 2008. Using the conversion factor of wet mass to ash free dry mass (AFDM), annual production ranged between 2.87-6.11 g AFDM/m2.yr, resulting in a turnover rate (P/B) between 5.11 and 3.47 in 2008 and 2009, respectively. The rapid growth and high turnover rate of D. striatussuggest a rapid recovery of the population. These results support the idea that this beach clam is an important resource at Las Balsas beach. Thus its exploitation must continue with caution, and only at the level of a recreational fishery.


Resumen:Los estudios sobre la dinámica poblacional de la almeja de playa Donax striatusson escasos y no existe información sobre la producción secundaria de alguna población de esta especie. Los parámetros del crecimiento y la producción secundaria de D. striatusfueron estimados a partir de datos de muestreo obtenidos entre febrero 2008 y noviembre 2009 en playa Las Balsas en la zona norte oriental de Cuba para aportar información básica para su manejo. Cada mes se recolectaron 45 muestras usando un núcleo de PVC de 0.025 m2, el sedimento fue tamizado en malla de 1 mm. Los individuos recolectados fueron medidos y pesados con concha y sin concha. La longitud de la concha fue de 2.7-33.3 mm. Los parámetros de crecimiento estimados a partir de las frecuencias de tallas fueron: Lm= 36.1 mm, K= 0.8/año y t0 = 0.2/año. El índice de crecimiento fue de 0'= 3.02. El tiempo de vida estimado de 2.4 años y la mortalidad 3.07/año. En 2008 la abundancia media de D. striatusfluctuó entre de 17.1-770.7 ind/m2. En 2009 la menor abundancia fue de 34.4 y la mayor de 892.5 ind/ m2. En 2009 la biomasa y la producción fueron más del doble que las estimadas en 2008. La mayor producción somática individual fue aportada por individuos de 24 mm (3.74 g/m2.año) y 25 mm (0.71 g/m2.año), considerando la masa total con concha y sin concha respectivamente. Durante 2009 la abundancia de individuos de 15 mm de longitud o más, se incrementó resultando en mayor bio-masa y producción en comparación con 2008. Usando el factor de conversión de peso húmedo a peso seco libre de cenizas (PSLC), la producción anual en 2008 fue de 2.87 y en 2009 fue 6.11 g PSLC/m2.año, lo que resulta en una tasa de renovación (P/B) de 5.11 en 2008 y 3.47 en 2009. Estos resultados apoyan la idea que la almeja de playa es un recurso importante y su explotación debe continuar con cautela y solo a un nivel de una pesquería recreativa.


Asunto(s)
Animales , Humanos , Bivalvos/crecimiento & desarrollo , Mariscos/clasificación , Biomasa , Bivalvos/clasificación , Cuba , Explotaciones Pesqueras , Densidad de Población , Dinámica Poblacional , Estaciones del Año
13.
Food Microbiol ; 46: 161-167, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25475280

RESUMEN

The objectives of this study were to develop a method for concentrating rotavirus, to assess the detection rate, and to characterize the genotype of naturally occurring rotavirus in bivalve shellfish species; including oysters (Saccostrea forskali), cockles (Anadara nodifera), and mussels (Perna viridis). The results demonstrated that an adsorption-twice elution-extraction method was less-time consuming method of concentrating the spiked rotavirus, yielding high sensitivity of 1.14 genome copies/g of digestive tissues from all three shellfish species, as detected using an RT-nested PCR. In seeding experiments, rotavirus as low as 1.39 genome copies was able to be detected in 4 g of digestive tissues or per sample. In the period of August 2011 to July 2012, of the 300 bivalve shellfish samples collected and tested, 24 (8.0%) were found to be contaminated with rotavirus, the figures being: oysters, 13/100 samples; mussels, 10/100 samples; and cockles, 1/100 samples. By DNA sequencing of the RT-nested PCR products and phylogenetic analysis, the rotaviruses detected were classified into G1, lineage II (4 samples); G3 (10 samples): lineage I (3 samples), lineage IIIc (3 samples), lineage IIId (3 samples), lineage IV (1 sample); G9 (6 samples); and G12, lineage III (1 sample). These findings suggest that this virus concentration method provides high sensitivity for the detection of rotavirus from the three bivalve shellfish species. The prevalence of rotavirus and the identified genotypes contribute to the molecular epidemiology of rotavirus in different shellfish species.


Asunto(s)
Bivalvos/virología , Reacción en Cadena de la Polimerasa/métodos , Rotavirus/aislamiento & purificación , Mariscos/virología , Animales , Bivalvos/clasificación , Contaminación de Alimentos/análisis , Genotipo , Filogenia , Rotavirus/clasificación , Rotavirus/genética , Mariscos/clasificación
14.
Food Chem ; 142: 48-60, 2014 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-24001811

RESUMEN

The consumption of marine mussels as popular seafood has increased steadily over the past decades. Awareness of mussel derived molecules, that promote health, has contributed to extensive research efforts in that field. This review highlights the bioactive potential of mussel components from species of the genus Mytilus (e.g. M. edulis) and Perna (e.g. P. canaliculus). In particular, the bioactivity related to three major chemical classes of mussel primary metabolites, i.e. proteins, lipids, and carbohydrates, is evaluated. Within the group of proteins the focus is mainly on mussel peptides e.g. those obtained by bio-transformation processes, such as fermentation. In addition, mussel lipids, comprising polyunsaturated fatty acids (PUFAs), are discussed as compounds that are well known for prevention and treatment of rheumatoid arthritis (RA). Within the third group of carbohydrates, mussel polysaccharides are investigated. Furthermore, the importance of monitoring the mussel as food material in respect to contaminations with natural toxins produced by microalgae is discussed.


Asunto(s)
Bivalvos/química , Alimentos Orgánicos/análisis , Mariscos/análisis , Animales , Bivalvos/clasificación , Humanos , Lípidos/análisis , Lípidos/economía , Toxinas Marinas/análisis , Polisacáridos/análisis , Proteínas/análisis , Mariscos/clasificación
15.
FEMS Microbiol Ecol ; 88(1): 69-83, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24325323

RESUMEN

The resident microbiota of three oyster species (Crassostrea corteziensis, Crassostrea gigas and Crassostrea sikamea) was characterised using a high-throughput sequencing approach (pyrosequencing) that was based on the V3-V5 regions of the 16S rRNA gene. We analysed the changes in the bacterial community beginning with the postlarvae produced in a hatchery, which were later planted at two grow-out cultivation sites until they reached the adult stage. DNA samples from the oysters were amplified, and 31 008 sequences belonging to 13 phyla (including Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes) and 243 genera were generated. Considering all life stages, Proteobacteria was the most abundant phylum, but it showed variations at the genus level between the postlarvae and the adult oysters. Bacteroidetes was the second most common phylum, but it was found in higher abundance in the postlarvae than in adults. The relative abundance showed that the microbiota that was associated with the postlarvae and adults differed substantially, and higher diversity and richness were evident in the postlarvae in comparison with adults of the same species. The site of rearing influenced the bacterial community composition of C. corteziensis and C. sikamea adults. The bacterial groups that were found in these oysters were complex and metabolically versatile, making it difficult to understand the host-bacteria symbiotic relationships; therefore, the physiological and ecological significances of the resident microbiota remain uncertain.


Asunto(s)
Bacteroidetes/aislamiento & purificación , Crassostrea/microbiología , Bacterias Grampositivas/aislamiento & purificación , Microbiota , Proteobacteria/aislamiento & purificación , Mariscos/microbiología , Animales , Bacteroidetes/clasificación , Bacteroidetes/genética , Crassostrea/clasificación , ADN Bacteriano/genética , Bacterias Grampositivas/clasificación , Bacterias Grampositivas/genética , Proteobacteria/clasificación , Proteobacteria/genética , ARN Ribosómico 16S/genética , Mariscos/clasificación
16.
Anal Biochem ; 421(1): 56-67, 2012 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-22080038

RESUMEN

Genomic and proteomic techniques for species identification of meat and seafood products are being widely used. In this study, a genomic approach was used to differentiate Pandalus borealis (the Northern shrimp), which belongs to the superfamily Pandaloidea, from 30 crustaceans consisting of 19 commercially relevant prawns/shrimps species that belong to the superfamily Penaeoidea, which include the families Penaeidae and Solenoceridae, and 11 other crustacean species, including prawns, shrimps, lobsters, and crabs. For this purpose, a polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method was designed based on the amplification of the 16S rRNA/tRNA(Val)/12S rRNA mitochondrial regions using the primers 16S-CruF and 16S-CruR. The 966-bp PCR products were produced and cleaved with the restriction enzymes AluI, TaqI, and HinfI, which provided species-specific restriction patterns. In addition, a proteomic approach, based on matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) and electrospray ionization-ion trap (ESI-IT) mass spectrometry, was used to identify and characterize new P. borealis-specific peptides that could be useful as potential markers of this species in protein-based detection methods. To our knowledge, this is the first time a molecular method has been successfully applied to identify a wide range of prawn and shrimp species, including P. borealis, for either whole individuals or processed products. However, validation of the methods proposed here is required by applying them to a larger sample of individuals from different populations and geographic origins in order to avoid mainly false-negative results.


Asunto(s)
Pandalidae/clasificación , Pandalidae/genética , Animales , Secuencia de Bases , Cartilla de ADN/genética , ADN Mitocondrial/genética , Electroforesis en Gel Bidimensional , Femenino , Masculino , Proteínas Musculares/aislamiento & purificación , Pandalidae/química , Mapeo Peptídico , Filogenia , Reacción en Cadena de la Polimerasa , Polimorfismo de Longitud del Fragmento de Restricción , Proteómica , Análisis de Secuencia de ADN , Mariscos/análisis , Mariscos/clasificación , Especificidad de la Especie , Espectrometría de Masa por Ionización de Electrospray , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Espectrometría de Masas en Tándem
17.
Artículo en Inglés | MEDLINE | ID: mdl-21879860

RESUMEN

The Camarones (CB) and Vitor (VB) Bays are situated in the middle of Atacama Desert, and their economies are based on activities entirely associated with the extraction of marine produce. The aim of this study was to determine the total arsenic content in three species of fish and seven species of shellfish from these two bays. The quantification of the total arsenic content in these products was performed by Hydride-Generation Atomic Absorption Spectrometry, HG-AAS. The results showed that marine species associated with the CB sector had higher total arsenic levels than the same species in the area of VB, a finding attributed to much higher total arsenic concentrations in the water and soils of CB than VB. The species with the highest total arsenic concentration was the Venus antique (7.50 mg kg (-1)) from the CB, and the lowest total arsenic content was found in Cheilodactylidae variegatus (0.34 mg kg(-1)) from VB.


Asunto(s)
Arsénico/análisis , Monitoreo del Ambiente/métodos , Peces/metabolismo , Mariscos/análisis , Contaminantes Químicos del Agua/análisis , Animales , Bahías , Chile , Peces/clasificación , Mariscos/clasificación , Especificidad de la Especie , Espectrofotometría Atómica/veterinaria
20.
J Chromatogr A ; 1218(28): 4445-51, 2011 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-21621784

RESUMEN

Selected tandem mass spectrometry (MS/MS) ion monitoring (SMIM) is the most suitable scanning mode to detect known peptides in complex samples when an ion-trap mass spectrometer is the instrument used for the analysis. In this mode, the MS detector is programmed to perform continuous MS/MS scans on one or more selected precursors, either during a selected time interval, or along the whole chromatographic run. MS/MS spectra are recorded, so virtual multiple reaction monitoring chromatogram traces for the different fragment ions can be plotted. In this work, a shotgun proteomics approach was applied to the detection of previously characterized species-specific peptides from different seafood species. The proposed methodology makes use of high intensity focused ultrasound-assisted trypsin digestion for ultra fast sample preparation, peptide separation and identification by reverse phase capillary LC coupled to an ion-trap working in the SMIM scanning mode. This methodology was applied to the differential classification of seven commercial, closely related, species of Decapoda shrimps proving to be an excellent tool for seafood product authentication, which may be used by fisheries and manufacturers to provide a fast and effective identification of the specimens, guaranteeing the quality and safety of foodstuffs to consumers.


Asunto(s)
Penaeidae/clasificación , Mapeo Peptídico/métodos , Proteínas/química , Mariscos/clasificación , Espectrometría de Masas en Tándem/métodos , Animales , Penaeidae/química , Fragmentos de Péptidos/química , Proteómica , Mariscos/análisis
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