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1.
Int J Mol Sci ; 25(9)2024 Apr 24.
Artículo en Inglés | MEDLINE | ID: mdl-38731842

RESUMEN

(1) Autophagy plays a significant role in development and cell proliferation. This process is mainly accomplished by the LC3 protein, which, after maturation, builds the nascent autophagosomes. The inhibition of LC3 maturation results in the interference of autophagy activation. (2) In this study, starting from the structure of a known LC3B binder (LIR2-RavZ peptide), we identified new LC3B ligands by applying an in silico drug design strategy. The most promising peptides were synthesized, biophysically assayed, and biologically evaluated to ascertain their potential antiproliferative activity on five humans cell lines. (3) A cyclic peptide (named Pep6), endowed with high conformational stability (due to the presence of a disulfide bridge), displayed a Kd value on LC3B in the nanomolar range. Assays accomplished on PC3, MCF-7, and A549 cancer cell lines proved that Pep6 exhibited cytotoxic effects comparable to those of the peptide LIR2-RavZ, a reference LC3B ligand. Furthermore, it was ineffective on both normal prostatic epithelium PNT2 and autophagy-defective prostate cancer DU145 cells. (4) Pep6 can be considered a new autophagy inhibitor that can be employed as a pharmacological tool or even as a template for the rational design of new small molecules endowed with autophagy inhibitory activity.


Asunto(s)
Autofagia , Diseño de Fármacos , Péptidos Cíclicos , Humanos , Autofagia/efectos de los fármacos , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/química , Péptidos Cíclicos/síntesis química , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Antineoplásicos/farmacología , Antineoplásicos/química , Antineoplásicos/síntesis química , Proteínas Asociadas a Microtúbulos/metabolismo , Simulación del Acoplamiento Molecular , Células A549 , Células MCF-7
2.
Amino Acids ; 56(1): 34, 2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38691208

RESUMEN

Breast cancer is the most common cancer among women worldwide, and marine creatures are the most abundant reservoir of anticancer medicines. Tachyplesin peptides have shown antibacterial capabilities, but their potential to inhibit cancer growth and trigger cancer cell death has not been investigated. A synthetic tachyplesin nucleotide sequence was generated and inserted into the pcDNA3.1( +) Mammalian Expression Vector. PCR analysis and enzyme digesting procedures were used to evaluate the vectors' accuracy. The transfection efficiency of MCF-7 and MCF10-A cells was 57% and 65%, respectively. The proliferation of MCF-7 cancer cells was markedly suppressed. Administration of plasmid DNA (pDNA) combined with tachyplesin to mice with tumors did not cause any discernible morbidity or mortality throughout treatment. The final body weight curves revealed a significant reduction in weight among mice treated with pDNA/tachyplesin and tachyplesin at a dose of 100 µg/ml (18.4 ± 0.24 gr, P < 0.05; 11.4 ± 0.24 gr P < 0.01) compared to the control group treated with PBS (22 ± 0.31 gr). Animals treated with pDNA/tachyplesin and tachyplesin exhibited a higher percentage of CD4 + Foxp3 + Tregs, CD8 + Foxp3 + Tregs, and CD4 + and CD8 + T cell populations expressing CTLA-4 in their lymph nodes and spleen compared to the PBS group. The groups that received pDNA/tachyplesin exhibited a substantial upregulation in the expression levels of caspase-3, caspase-8, BAX, PI3K, STAT3, and JAK genes. The results offer new possibilities for treating cancer by targeting malignancies using pDNA/tachyplesin and activating the mTOR and NFκB signaling pathways.


Asunto(s)
Péptidos Catiónicos Antimicrobianos , Apoptosis , Proteínas de Unión al ADN , Péptidos Cíclicos , Plásmidos , Animales , Apoptosis/efectos de los fármacos , Humanos , Ratones , Femenino , Péptidos Catiónicos Antimicrobianos/farmacología , Péptidos Cíclicos/farmacología , Células MCF-7 , Proliferación Celular/efectos de los fármacos , Línea Celular Tumoral , Neoplasias de la Mama/tratamiento farmacológico , Neoplasias de la Mama/patología , Neoplasias de la Mama/terapia , Neoplasias de la Mama/inmunología , ADN , Ratones Endogámicos BALB C
3.
Yakugaku Zasshi ; 144(5): 553-565, 2024.
Artículo en Japonés | MEDLINE | ID: mdl-38692932

RESUMEN

A series of antitumor bicyclic hexapeptide RA-VII analogues modified at residue 2, 3, or 6 were prepared by the chemical transformation of the hydroxy, methoxy, or carboxy groups or the aromatic rings of natural peptides RA-II, III, V, VII, and X. Analogues with modified side chains or peptide backbones, which cannot be prepared by the chemical transformation of their natural peptides, and newly isolated peptides from Rubia cordifolia roots were synthesized by using protected cycloisodityrosines prepared by the degradation of bis(thioamide) obtained from RA-VII or the diphenyl ether formation of boronodipeptide under the modified Chan-Lam coupling reaction conditions. Studies of the conformational features of the analogues and the newly isolated peptides and their relationships with cytotoxic activities against the HCT-116, HL-60, KATO-III, KB, L1210, MCF-7, and P-388 cell lines revealed the following: the methoxy group at residue 3 is essential for the potent cytotoxic activity; the methyl group at Ala-2 and Ala-4 but not at D-Ala-1 is required to establish the bioactive conformation; the N-methyl group at Tyr-5 is necessary for the peptides to adopt the active conformation preferentially; and the orientation of Tyr-5 and/or Tyr-6 phenyl rings has a significant effect on the cytotoxic activity.


Asunto(s)
Péptidos Cíclicos , Humanos , Relación Estructura-Actividad , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/síntesis química , Oligopéptidos/química , Oligopéptidos/farmacología , Oligopéptidos/síntesis química , Antineoplásicos/farmacología , Antineoplásicos/química , Antineoplásicos/síntesis química , Rubia/química , Raíces de Plantas/química , Línea Celular Tumoral , Antineoplásicos Fitogénicos/farmacología , Conformación Proteica
4.
J Med Chem ; 67(9): 7146-7157, 2024 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-38636481

RESUMEN

Previously, we demonstrated that linear peptide epoxyketones targeting the immunoproteasome (iP) could ameliorate cognitive deficits in mouse models of Alzheimer's disease (AD) independently of amyloid deposition. We also reported the first iP-targeting macrocyclic peptide epoxyketones, which exhibit improved metabolic stability compared with their linear counterparts. Here, we prepared additional macrocyclic peptide epoxyketones and compared them with existing macrocyclic iP inhibitors by assessing Caco2 cell-based permeability and microsomal stability, providing the four best macrocyclic iP inhibitors. We then evaluated the four compounds using the Ames test and the potency assays in BV2 cells, selecting compound 5 as our AD drug lead. When 5 was administered intravenously (40 mg/kg) or orally (150 mg/kg) into healthy BALB/c mice, we observed considerable iP inhibition in the mouse brain, indicating good blood-brain barrier permeability and target engagement. Combined results suggest that 5 is a promising AD drug lead that may need further investigation.


Asunto(s)
Enfermedad de Alzheimer , Barrera Hematoencefálica , Encéfalo , Ratones Endogámicos BALB C , Animales , Enfermedad de Alzheimer/tratamiento farmacológico , Enfermedad de Alzheimer/metabolismo , Humanos , Barrera Hematoencefálica/metabolismo , Ratones , Células CACO-2 , Encéfalo/metabolismo , Complejo de la Endopetidasa Proteasomal/metabolismo , Permeabilidad , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/farmacocinética , Inhibidores de Proteasoma/farmacología , Inhibidores de Proteasoma/química , Compuestos Macrocíclicos/química , Compuestos Macrocíclicos/farmacología , Compuestos Macrocíclicos/farmacocinética , Cetonas/química , Cetonas/farmacología , Relación Estructura-Actividad
5.
Int J Biol Macromol ; 267(Pt 2): 131546, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38614172

RESUMEN

Chitosan-based nanoparticles inevitably adsorb numerous proteins in the bloodstream, forming a protein corona that significantly influences their functionality. This study employed a pre-coated protein corona using cyclic Arg-Gly-Asp peptide (cRGD)-modified bovine serum albumin (BcR) to confer tumor-targeting capabilities on siVEGF-loaded chitosan-based nanoparticles (CsR/siVEGF NPs) and actively manipulated the serum protein corona composition to enhance their anti-tumor angiogenesis. Consequently, BcR effectively binds to the nanoparticles' surface, generating nanocarriers of appropriate size and stability that enhance the inhibition of endothelial cell proliferation, migration, invasion, and tube formation, as well as suppress tumor proliferation and angiogenesis in tumor-bearing nude mice. Proteomic analysis indicated a significant enrichment of serotransferrin, albumin, and proteasome subunit alpha type-1 in the protein corona of BcR-precoated NPs formed in the serum of tumor-bearing nude mice. Additionally, there was a decrease in proteins associated with complement activation, immunoglobulins, blood coagulation, and acute-phase responses. This modification resulted in an enhanced impact on anti-tumor angiogenesis, along with a reduction in opsonization and inflammatory responses. Therefore, pre-coating of nanoparticles with a functionalized albumin corona to manipulate the composition of serum protein corona emerges as an innovative approach to improve the delivery effectiveness of chitosan-based carriers for siVEGF, targeting the inhibition of tumor angiogenesis.


Asunto(s)
Quitosano , Nanopartículas , Neovascularización Patológica , Corona de Proteínas , Albúmina Sérica Bovina , Quitosano/química , Animales , Nanopartículas/química , Ratones , Humanos , Corona de Proteínas/química , Albúmina Sérica Bovina/química , Neovascularización Patológica/tratamiento farmacológico , Ratones Desnudos , Células Endoteliales de la Vena Umbilical Humana/efectos de los fármacos , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Proliferación Celular/efectos de los fármacos , Portadores de Fármacos/química , Bovinos , Factor A de Crecimiento Endotelial Vascular/metabolismo , Ensayos Antitumor por Modelo de Xenoinjerto , Movimiento Celular/efectos de los fármacos , Línea Celular Tumoral , Inhibidores de la Angiogénesis/farmacología , Inhibidores de la Angiogénesis/química , Angiogénesis
6.
Bioconjug Chem ; 35(5): 638-652, 2024 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-38669628

RESUMEN

Aberrant canonical NF-κB signaling has been implicated in diseases, such as autoimmune disorders and cancer. Direct disruption of the interaction of NEMO and IKKα/ß has been developed as a novel way to inhibit the overactivation of NF-κB. Peptides are a potential solution for disrupting protein-protein interactions (PPIs); however, they typically suffer from poor stability in vivo and limited tissue penetration permeability, hampering their widespread use as new chemical biology tools and potential therapeutics. In this work, decafluorobiphenyl-cysteine SNAr chemistry, molecular modeling, and biological validation allowed the development of peptide PPI inhibitors. The resulting cyclic peptide specifically inhibited canonical NF-κB signaling in vitro and in vivo, and presented positive metabolic stability, anti-inflammatory effects, and low cytotoxicity. Importantly, our results also revealed that cyclic peptides had huge potential in acute lung injury (ALI) treatment, and confirmed the role of the decafluorobiphenyl-based cyclization strategy in enhancing the biological activity of peptide NEMO-IKKα/ß inhibitors. Moreover, it provided a promising method for the development of peptide-PPI inhibitors.


Asunto(s)
Lesión Pulmonar Aguda , Quinasa I-kappa B , Lipopolisacáridos , Péptidos Cíclicos , Quinasa I-kappa B/metabolismo , Quinasa I-kappa B/antagonistas & inhibidores , Lesión Pulmonar Aguda/tratamiento farmacológico , Lesión Pulmonar Aguda/inducido químicamente , Lesión Pulmonar Aguda/metabolismo , Animales , Ratones , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Humanos , FN-kappa B/metabolismo , Unión Proteica , Ciclización
7.
J Nat Prod ; 87(4): 984-993, 2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38587271

RESUMEN

A chemical investigation of the hydrophilic fraction of a cultured Nodularia sp. (NIES-3585) afforded six new cyclic lipopeptides, noducyclamides A1-A4 (1-4) containing 10 amino acid residues and dodecapeptides noducyclamides B1 and B2 (5 and 6). The planar structures of these lipopeptides were elucidated based on the combination of HRMS and 1D and 2D NMR spectroscopic data analyses. These peptides are structurally analogous to laxaphycins and contain the nonproteinogenic amino acids 3-hydroxyvaline and 3-hydroxyleucine and a ß-amino decanoic acid residue. The absolute configurations of the noducyclamides (1-6) were determined by acid hydrolysis, followed by advanced Marfey's analysis. Noducyclamide B1 (5) showed cytotoxic activities against MCF7 breast cancer cell lines with an IC50 value of 3.0 µg/mL (2.2 µM).


Asunto(s)
Cianobacterias , Péptidos Cíclicos , Humanos , Estructura Molecular , Cianobacterias/química , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/química , Lipopéptidos/farmacología , Lipopéptidos/química , Ensayos de Selección de Medicamentos Antitumorales , Células MCF-7 , Antineoplásicos/farmacología , Antineoplásicos/química , Antineoplásicos/aislamiento & purificación , Femenino , Resonancia Magnética Nuclear Biomolecular
8.
J Nat Prod ; 87(4): 1230-1234, 2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38626456

RESUMEN

Three new cyclic heptapeptides, talaromides A-C (1-3), were isolated from cultures produced by the fungus Talaromyces siglerae (Ascomycota), isolated from an unidentified sponge. The structures, featuring an unusual proline-anthranilic moiety, were elucidated by analysis of spectroscopic data and chemical transformations, including the advanced Marfey's method and GITC derivatization. Talaromides A and B inhibited migration activity against PANC-1 human pancreatic cancer cells without significant cytotoxicity.


Asunto(s)
Péptidos Cíclicos , Poríferos , Talaromyces , Talaromyces/química , Animales , Poríferos/microbiología , Humanos , Estructura Molecular , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/química , Péptidos Cíclicos/aislamiento & purificación , Ensayos de Selección de Medicamentos Antitumorales , Biología Marina , Antineoplásicos/farmacología , Antineoplásicos/química , Antineoplásicos/aislamiento & purificación
9.
Nat Commun ; 15(1): 3521, 2024 Apr 25.
Artículo en Inglés | MEDLINE | ID: mdl-38664456

RESUMEN

Recently, a novel cyclo-heptapeptide composed of alternating D,L-amino acids and a unique thiazolidine heterocycle, called lugdunin, was discovered, which is produced by the nasal and skin commensal Staphylococcus lugdunensis. Lugdunin displays potent antimicrobial activity against a broad spectrum of Gram-positive bacteria, including challenging-to-treat methicillin-resistant Staphylococcus aureus (MRSA). Lugdunin specifically inhibits target bacteria by dissipating their membrane potential. However, the precise mode of action of this new class of fibupeptides remains largely elusive. Here, we disclose the mechanism by which lugdunin rapidly destabilizes the bacterial membrane potential using an in vitro approach. The peptide strongly partitions into lipid compositions resembling Gram-positive bacterial membranes but less in those harboring the eukaryotic membrane component cholesterol. Upon insertion, lugdunin forms hydrogen-bonded antiparallel ß-sheets by the formation of peptide nanotubes, as demonstrated by ATR-FTIR spectroscopy and molecular dynamics simulations. These hydrophilic nanotubes filled with a water wire facilitate not only the translocation of protons but also of monovalent cations as demonstrated by voltage-clamp experiments on black lipid membranes. Collectively, our results provide evidence that the natural fibupeptide lugdunin acts as a peptidic channel that is spontaneously formed by an intricate stacking mechanism, leading to the dissipation of a bacterial cell's membrane potential.


Asunto(s)
Staphylococcus aureus Resistente a Meticilina , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos , Simulación de Dinámica Molecular , Agua/química , Potenciales de la Membrana/efectos de los fármacos , Membrana Celular/efectos de los fármacos , Membrana Celular/metabolismo , Membrana Celular/química , Antibacterianos/farmacología , Antibacterianos/química , Lípidos de la Membrana/química , Lípidos de la Membrana/metabolismo , Staphylococcus lugdunensis/efectos de los fármacos , Staphylococcus lugdunensis/química , Staphylococcus lugdunensis/metabolismo , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Espectroscopía Infrarroja por Transformada de Fourier , Pruebas de Sensibilidad Microbiana , Nanotubos/química , Péptidos Antimicrobianos/química , Péptidos Antimicrobianos/farmacología
10.
Sci Rep ; 14(1): 9469, 2024 04 24.
Artículo en Inglés | MEDLINE | ID: mdl-38658583

RESUMEN

Bovine mastitis caused by S. aureus has a major economic impact on the dairy sector. With the crucial need for new therapies, anti-virulence strategies have gained attention as alternatives to antibiotics. Here we aimed to identify novel compounds that inhibit the production/activity of hemolysins, a virulence factor of S. aureus associated with mastitis severity. We screened Bacillus strains obtained from diverse sources for compounds showing anti-hemolytic activity. Our results demonstrate that lipopeptides produced by Bacillus spp. completely prevented the hemolytic activity of S. aureus at certain concentrations. Following purification, both iturins, fengycins, and surfactins were able to reduce hemolysis caused by S. aureus, with iturins showing the highest anti-hemolytic activity (up to 76% reduction). The lipopeptides showed an effect at the post-translational level. Molecular docking simulations demonstrated that these compounds can bind to hemolysin, possibly interfering with enzyme action. Lastly, molecular dynamics analysis indicated general stability of important residues for hemolysin activity as well as the presence of hydrogen bonds between iturins and these residues, with longevous interactions. Our data reveals, for the first time, an anti-hemolytic activity of lipopeptides and highlights the potential application of iturins as an anti-virulence therapy to control bovine mastitis caused by S. aureus.


Asunto(s)
Bacillus , Proteínas Hemolisinas , Hemólisis , Lipopéptidos , Simulación del Acoplamiento Molecular , Staphylococcus aureus , Bacillus/metabolismo , Bacillus/química , Staphylococcus aureus/efectos de los fármacos , Hemólisis/efectos de los fármacos , Animales , Bovinos , Lipopéptidos/farmacología , Lipopéptidos/química , Proteínas Hemolisinas/antagonistas & inhibidores , Proteínas Hemolisinas/metabolismo , Antibacterianos/farmacología , Antibacterianos/química , Mastitis Bovina/microbiología , Mastitis Bovina/tratamiento farmacológico , Femenino , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/química , Infecciones Estafilocócicas/tratamiento farmacológico , Infecciones Estafilocócicas/microbiología , Simulación de Dinámica Molecular
11.
Eur J Pharm Sci ; 197: 106776, 2024 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-38663759

RESUMEN

The emergence of multidrug-resistant (MDR) strains causes severe problems in the treatment of microbial infections owing to limited treatment options. Antimicrobial peptides (AMPs) are drawing considerable attention as promising antibiotic alternative candidates to combat MDR bacterial and fungal infections. Herein, we present a series of small amphiphilic membrane-active cyclic peptides composed, in part, of various nongenetically encoded hydrophilic and hydrophobic amino acids. Notably, lead cyclic peptides 3b and 4b showed broad-spectrum activity against drug-resistant Gram-positive (MIC = 1.5-6.2 µg/mL) and Gram-negative (MIC = 12.5-25 µg/mL) bacteria, and fungi (MIC = 3.1-12.5 µg/mL). Furthermore, lead peptides displayed substantial antibiofilm action comparable to standard antibiotics. Hemolysis (HC50 = 230 µg/mL) and cytotoxicity (>70 % cell viability against four different mammalian cells at 100 µg/mL) assay results demonstrated the selective lethal action of 3b against microbes over mammalian cells. A calcein dye leakage experiment substantiated the membranolytic effect of 3b and 4b, which was further confirmed by scanning electron microscopy. The behavior of 3b and 4b in aqueous solution and interaction with phospholipid bilayers were assessed by employing nuclear magnetic resonance (NMR) spectroscopy in conjunction with molecular dynamics (MD) simulations, providing a solid structural basis for understanding their membranolytic action. Moreover, 3b exhibited stability in human blood plasma (t1/2 = 13 h) and demonstrated no signs of resistance development against antibiotic-resistant S. aureus and E. coli. These findings underscore the potential of these newly designed amphiphilic cyclic peptides as promising anti-infective agents, especially against Gram-positive bacteria.


Asunto(s)
Biopelículas , Farmacorresistencia Bacteriana Múltiple , Hemólisis , Pruebas de Sensibilidad Microbiana , Humanos , Farmacorresistencia Bacteriana Múltiple/efectos de los fármacos , Biopelículas/efectos de los fármacos , Hemólisis/efectos de los fármacos , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/química , Antibacterianos/farmacología , Antibacterianos/química , Péptidos Catiónicos Antimicrobianos/farmacología , Péptidos Catiónicos Antimicrobianos/química , Animales , Hongos/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Antifúngicos/farmacología , Antifúngicos/química , Bacterias Gramnegativas/efectos de los fármacos
12.
Mol Pharm ; 21(5): 2415-2424, 2024 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-38606663

RESUMEN

Chemokines and chemokine receptors are indispensable to play a key role in the development of malignant tumors. As one of the most widely expressed chemokine receptors, chemokine (C-X-C motif) receptor 4 (CXCR4) has been a popular research focus. In most tumors, CXCR4 expression is significantly upregulated. Moreover, integrated nuclide diagnosis and therapy targeting CXCR4 show great potential. [68Ga]Ga-pentixafor, a radioligand targeting CXCR4, exhibits a strong affinity for CXCR4 both in vivo and in vitro. However, [177Lu]Lu-pentixather, the therapeutic companion of [68Ga]Ga-pentixafor, requires significant refinement to mitigate its pronounced hepatic biodistribution. The objective of this study was to synthesize theranostic molecular tracers with superior CXCR4 targeting functions. The Daudi cell line, which highly expressed CXCR4, and the MM.1S cell line, which weakly expressed CXCR4, were used in this study. Based on the pharmacophore cyclo (-d-Tyr-n-me-d-Orn-l-Arg-L-2-NAL-Gly-) (CPCR4) of pentixafor, six tracers were synthesized: [124I]I-1 ([124I]I-CPCR4), [99mTc]Tc-2 ([99mTc]Tc-HYNIC-CPCR4), [124I]I-3 ([124I]I-pentixafor), [18F]AlF-4 ([18F]AlF-NETA-CPCR4), [99mTc]Tc-5 ([99mTc]Tc-MAG3-CPCR4) and [124I]I-6 ([124I]I-pentixafor-Ga) and their radiochemical purities were all higher than 95%. After positron emission tomography (PET)/single-photon emission computed tomography (SPECT) imaging, the [124I]I-6 group exhibited the best target-nontarget ratio. At the same time, comparing the [68Ga]Ga-pentixafor group with the [124I]I-6 group, we found that the [124I]I-6 group had a better target-nontarget ratio and lower uptake in nontarget organs. Therefore, compound 6 was selected for therapeutic radionuclide (131I) labeling, and the tumor-bearing animal models were treated with [131I]I-6. The volume of the tumor site was significantly reduced in the treatment group compared with the control group, and no significant side effects were found. [124I]I-6 and [131I]I-6 showed excellent affinity for targeting CXCR4, and they showed great potential for the integrated diagnosis and treatment of tumors with high CXCR4 expression.


Asunto(s)
Complejos de Coordinación , Receptores CXCR4 , Receptores CXCR4/metabolismo , Receptores CXCR4/genética , Animales , Humanos , Ratones , Línea Celular Tumoral , Distribución Tisular , Radiofármacos/farmacocinética , Radiofármacos/farmacología , Radiofármacos/química , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Sondas Moleculares/química , Sondas Moleculares/farmacocinética , Radioisótopos de Galio , Ratones Desnudos , Nanomedicina Teranóstica/métodos , Femenino
13.
Phytochemistry ; 222: 114074, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38604324

RESUMEN

Ustiloxins I-M (1-5), five undescribed cyclopeptides bearing a 15-membered macrocyclic skeleton, were isolated from Cordyceps militaris. The structures of 1 and 5 were identified by spectroscopic and crystallographic methods, whereas the structures of 2-4 were assigned by spectroscopic and computational approaches. Biological evaluation of all the compounds toward human triple-negative breast cancer cells revealed that compounds 4 and 5 are toxic with IC50 values of 64.29 µM and 28.89 µM, respectively.


Asunto(s)
Cordyceps , Péptidos Cíclicos , Cordyceps/química , Péptidos Cíclicos/química , Péptidos Cíclicos/aislamiento & purificación , Péptidos Cíclicos/farmacología , Humanos , Estructura Molecular , Ensayos de Selección de Medicamentos Antitumorales , Línea Celular Tumoral , Antineoplásicos/farmacología , Antineoplásicos/química , Antineoplásicos/aislamiento & purificación , Relación Estructura-Actividad , Proliferación Celular/efectos de los fármacos , Relación Dosis-Respuesta a Droga
14.
Science ; 384(6694): 420-428, 2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38662830

RESUMEN

Small macrocycles with four or fewer amino acids are among the most potent natural products known, but there is currently no way to systematically generate such compounds. We describe a computational method for identifying ordered macrocycles composed of alpha, beta, gamma, and 17 other amino acid backbone chemistries, which we used to predict 14.9 million closed cycles composed of >42,000 monomer combinations. We chemically synthesized 18 macrocycles predicted to adopt single low-energy states and determined their x-ray or nuclear magnetic resonance structures; 15 of these were very close to the design models. We illustrate the therapeutic potential of these macrocycle designs by developing selective inhibitors of three protein targets of current interest. By opening up a vast space of readily synthesizable drug-like macrocycles, our results should considerably enhance structure-based drug design.


Asunto(s)
Amidas , Aminoácidos , Productos Biológicos , Diseño de Fármacos , Péptidos Cíclicos , Amidas/química , Aminoácidos/química , Productos Biológicos/síntesis química , Productos Biológicos/química , Productos Biológicos/farmacología , Cristalografía por Rayos X , Espectroscopía de Resonancia Magnética , Modelos Moleculares , Conformación Molecular , Péptidos Cíclicos/síntesis química , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología
15.
ACS Chem Neurosci ; 15(9): 1755-1769, 2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38602894

RESUMEN

Neurotrophins are a family of growth factors that play a key role in the development and regulation of the functioning of the central nervous system. Their use as drugs is made difficult by their poor stability, cellular permeability, and side effects. Continuing our effort to use peptides that mimic the neurotrophic growth factor (NGF), the family model protein, and specifically the N-terminus of the protein, here we report on the spectroscopic characterization and resistance to hydrolysis of the 14-membered cyclic peptide reproducing the N-terminus sequence (SSSHPIFHRGEFSV (c-NGF(1-14)). Far-UV CD spectra and a computational study show that this peptide has a rigid conformation and left-handed chirality typical of polyproline II that favors its interaction with the D5 domain of the NGF receptor TrkA. c-NGF(1-14) is able to bind Cu2+ with good affinity; the resulting complexes have been characterized by potentiometric and spectroscopic measurements. Experiments on PC12 cells show that c-NGF(1-14) acts as an ionophore, influencing the degree and the localization of both the membrane transporter (Ctr1) and the copper intracellular transporter (CCS). c-NGF(1-14) induces PC12 differentiation, mimics the protein in TrkA phosphorylation, and activates the kinase cascade, inducing Erk1/2 phosphorylation. c-NGF(1-14) biological activities are enhanced when the peptide interacts with Cu2+ even with the submicromolar quantities present in the culture media as demonstrated by ICP-OES measurements. Finally, c-NGF(1-14) and Cu2+ concur to activate the cAMP response element-binding protein CREB that, in turn, induces the brain-derived neurotrophic factor (BDNF) and the vascular endothelial growth factor (VEGF) release.


Asunto(s)
Factor Neurotrófico Derivado del Encéfalo , Cobre , Factor de Crecimiento Nervioso , Péptidos Cíclicos , Factor A de Crecimiento Endotelial Vascular , Células PC12 , Animales , Ratas , Factor de Crecimiento Nervioso/farmacología , Factor de Crecimiento Nervioso/metabolismo , Factor A de Crecimiento Endotelial Vascular/metabolismo , Cobre/metabolismo , Cobre/farmacología , Factor Neurotrófico Derivado del Encéfalo/metabolismo , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/química , Transducción de Señal/efectos de los fármacos , Transducción de Señal/fisiología , Ionóforos/farmacología , Proteínas de Transporte de Catión/metabolismo , Receptor trkA/metabolismo
16.
J Nat Prod ; 87(4): 733-742, 2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38573876

RESUMEN

Nine bacteria were isolated from the episphere of Suaeda maritima (L.) Dumort. Among them, the bacterial strain YSL2 displayed the highest antimicrobial activity on agar plates and exhibited significant novelty compared with other bacteria based on 16S rRNA analysis. Consequently, Nocardiopsis maritima YSL2T was subjected to phenotypic characterization and whole-genome sequencing. Phylogenetic analysis revealed its close association with Nocardiopsis aegyptia SNG49T. Furthermore, genomic analysis of strain YSL2T revealed the presence of various gene clusters, indicating its potential for producing antimicrobial secondary metabolites. Upon cultivation on a large scale, maritiamides A and B (1 and 2) were isolated and characterized as cyclic hexapeptides based on nuclear magnetic resonance, ultraviolet, infrared, and mass spectrometric data. The absolute configurations of the amino acid residues in the maritiamides were determined through chiral derivatization, utilizing FDAA and GITC. Maritiamides 1 and 2 exhibited promising antibacterial activities against Staphylococcus epidermidis and weakly inhibited the growth of Escherichia coli and Pseudomonas fluorescens.


Asunto(s)
Antibacterianos , Nocardiopsis , Antibacterianos/farmacología , Antibacterianos/química , Chenopodiaceae/microbiología , Escherichia coli/efectos de los fármacos , Genómica , Metabolómica , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Nocardiopsis/química , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Filogenia , Pseudomonas/efectos de los fármacos , ARN Ribosómico 16S/genética , Staphylococcus/efectos de los fármacos
17.
Microb Pathog ; 190: 106604, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38490458

RESUMEN

Early blight caused by Alternaria solani is a common foliar disease of potato around the world, and serious infections result in reduced yields and marketability due to infected tubers. The major aim of this study is to figure out the synergistic effect between microorganism and fungicides and to evaluate the effectiveness of Bacillus subtilis NM4 in the control of early blight in potato. Based on its colonial morphology and a 16S rRNA analysis, a bacterial antagonist isolated from kimchi was identified as B. subtilis NM4 and it has strong antifungal and anti-oomycete activity against several phytopathogenic fungi and oomycetes. The culture filtrate of strain NM4 with the fungicide effectively suppressed the mycelial growth of A. solani, with the highest growth inhibition rate of 83.48%. Although exposure to culture filtrate prompted hyphal alterations in A. solani, including bulging, combining it with the fungicide caused more severe hyphal damage with continuous bulging. Surfactins and fengycins, two lipopeptide groups, were isolated and identified as the main compounds in two fractions using LC-ESI-MS. Although the surfactin-containing fraction failed to inhibit growth, the fengycin-containing fraction, alone and in combination with chlorothalonil, restricted mycelial development, producing severe hyphal deformations with formation of chlamydospores. A pot experiment combining strain NM4, applied as a broth culture, with fungicide, at half the recommended concentration, resulted in a significant reduction in potato early blight severity. Our results indicate the feasibility of an integrated approach for the management of early blight in potato that can reduce fungicide application rates, promoting a healthy ecosystem in agriculture.


Asunto(s)
Alternaria , Bacillus subtilis , Fungicidas Industriales , Lipopéptidos , Nitrilos , Enfermedades de las Plantas , Solanum tuberosum , Solanum tuberosum/microbiología , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/prevención & control , Alternaria/efectos de los fármacos , Alternaria/crecimiento & desarrollo , Bacillus subtilis/efectos de los fármacos , Bacillus subtilis/crecimiento & desarrollo , Fungicidas Industriales/farmacología , Nitrilos/farmacología , Lipopéptidos/farmacología , ARN Ribosómico 16S/genética , Hifa/efectos de los fármacos , Hifa/crecimiento & desarrollo , Micelio/efectos de los fármacos , Micelio/crecimiento & desarrollo , Péptidos Cíclicos/farmacología
18.
J Nat Prod ; 87(4): 1197-1202, 2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38503712

RESUMEN

HPLC-MS analysis revealed the presence of an unreported peptide in the extract of the marine sponge Neopetrosia sp. Its structure was determined as a tripeptide, named neopetromin (1), composed of two tyrosine and one tryptophan residues with a heteroaromatic C-N cross-link between side chains. The absolute configuration of amino acids was determined using Marfey's method after ozonolysis and hydrolysis of 1. Compound 1 promoted vacuole fragmentation in an actin-independent manner in tobacco BY-2 cells.


Asunto(s)
Nicotiana , Poríferos , Vacuolas , Animales , Estructura Molecular , Poríferos/química , Nicotiana/química , Vacuolas/efectos de los fármacos , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Biología Marina , Oligopéptidos/química , Oligopéptidos/farmacología , Oligopéptidos/aislamiento & purificación , Cromatografía Líquida de Alta Presión , Triptófano/química , Triptófano/farmacología
19.
J Am Chem Soc ; 146(13): 8877-8886, 2024 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-38503564

RESUMEN

Hypoxia inducible factor (HIF) is a heterodimeric transcription factor composed of an oxygen-regulated α subunit and a constitutively expressed ß subunit that serves as the master regulator of the cellular response to low oxygen concentrations. The HIF transcription factor senses and responds to hypoxia by significantly altering transcription and reprogramming cells to enable adaptation to a hypoxic microenvironment. Given the central role played by HIF in the survival and growth of tumors in hypoxia, inhibition of this transcription factor serves as a potential therapeutic approach for treating a variety of cancers. Here, we report the identification, optimization, and characterization of a series of cyclic peptides that disrupt the function of HIF-1 and HIF-2 transcription factors by inhibiting the interaction of both HIF-1α and HIF-2α with HIF-1ß. These compounds are shown to bind to HIF-α and disrupt the protein-protein interaction between the α and ß subunits of the transcription factor, resulting in disruption of hypoxia-response signaling by our lead molecule in several cancer cell lines.


Asunto(s)
Factor 1 Inducible por Hipoxia , Neoplasias , Humanos , Factor 1 Inducible por Hipoxia/metabolismo , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/metabolismo , Hipoxia , Transducción de Señal , Oxígeno/metabolismo , Hipoxia de la Célula , Subunidad alfa del Factor 1 Inducible por Hipoxia/metabolismo , Neoplasias/tratamiento farmacológico
20.
J Med Chem ; 67(6): 4889-4903, 2024 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-38485922

RESUMEN

Directly blocking the Keap1-Nrf2 pathway is a promising strategy for the mitigation of acute lung injury (ALI). Peptide Keap1-Nrf2 inhibitors have been reported to have a high Keap1 binding affinity. However, these inhibitors showed weak activity in cells and/or animals. In this study, we designed a series of linear peptides from an Nrf2-based 9-mer Ac-LDEETGEFL-NH2. To improve the cellular activity, we further designed cyclic peptides based on the crystal complex of Keap1 with a linear peptide. Among them, cyclic 9-mer ZC9 targeting Keap1 showed a better affinity (KD2 = 51 nM). Specifically, it exhibited an acceptable water solubility (>38 mg/mL), better cell permeability, cell activity, and metabolic stability (serum t1/2 > 24 h). In the in vitro LPS-induced oxidative damages and ALI model, ZC9 showed significant dose-response reversal activity without apparent toxicity. In conclusion, our results suggested ZC9 as a lead cyclic peptide targeting the Keap1-Nrf2 pathway for ALI clinical treatment.


Asunto(s)
Lesión Pulmonar Aguda , Péptidos Cíclicos , Animales , Péptidos Cíclicos/farmacología , Péptidos Cíclicos/uso terapéutico , Péptidos Cíclicos/metabolismo , Proteína 1 Asociada A ECH Tipo Kelch/metabolismo , Factor 2 Relacionado con NF-E2/metabolismo , Péptidos/farmacología , Péptidos/uso terapéutico , Péptidos/química , Lesión Pulmonar Aguda/tratamiento farmacológico
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