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1.
J Cell Biol ; 219(7)2020 07 06.
Artículo en Inglés | MEDLINE | ID: mdl-32496561

RESUMEN

Cilia and flagella are microtubule-based cellular projections with important sensory and motility functions. Their absence or malfunction is associated with a growing number of human diseases collectively referred to as ciliopathies. However, the fundamental mechanisms underpinning cilia biogenesis and functions remain only partly understood. Here, we show that depleting LUZP1 or its interacting protein, EPLIN, increases the levels of MyosinVa at the centrosome and primary cilia formation. We further show that LUZP1 localizes to both actin filaments and the centrosome/basal body. Like EPLIN, LUZP1 is an actin-stabilizing protein that regulates actin dynamics, at least in part, by mobilizing ARP2 to the centrosomes. Both LUZP1 and EPLIN interact with known ciliogenesis and cilia-length regulators and as such represent novel players in actin-dependent centrosome to basal body conversion. Ciliogenesis deregulation caused by LUZP1 or EPLIN loss may thus contribute to the pathology of their associated disease states.


Asunto(s)
Actinas/genética , Cilios/metabolismo , Proteínas del Citoesqueleto/genética , Células Epiteliales/metabolismo , Cadenas Pesadas de Miosina/genética , Miosina Tipo V/genética , Citoesqueleto de Actina/metabolismo , Citoesqueleto de Actina/ultraestructura , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/genética , Proteína 2 Relacionada con la Actina/metabolismo , Actinas/química , Actinas/metabolismo , Animales , Cuerpos Basales/metabolismo , Cuerpos Basales/ultraestructura , Línea Celular Tumoral , Centrosoma/metabolismo , Centrosoma/ultraestructura , Cilios/ultraestructura , Ciliopatías/genética , Ciliopatías/metabolismo , Ciliopatías/patología , Proteínas del Citoesqueleto/química , Proteínas del Citoesqueleto/metabolismo , Células Epiteliales/ultraestructura , Fibroblastos/metabolismo , Fibroblastos/ultraestructura , Flagelos/metabolismo , Flagelos/ultraestructura , Expresión Génica , Células HEK293 , Células HeLa , Humanos , Células MCF-7 , Microtúbulos/metabolismo , Microtúbulos/ultraestructura , Cadenas Pesadas de Miosina/química , Cadenas Pesadas de Miosina/metabolismo , Miosina Tipo V/química , Miosina Tipo V/metabolismo , Estabilidad Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
2.
J Pharmacol Exp Ther ; 358(3): 423-30, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27340210

RESUMEN

Growth differentiation factor-11 (GDF11) and myostatin (MSTN) are highly related transforming growth factor-ß (TGF-ß) ligands with 89% amino acid sequence homology. They have different biologic activities and diverse tissue distribution patterns. However, the activities of these ligands are indistinguishable in in vitro assays. SMAD2/3 signaling has been identified as the canonical pathway for GDF11 and MSTN, However, it remains unclear which receptor heterodimer and which antagonists preferentially mediate and regulate signaling. In this study, we investigated the initiation and regulation of GDF11 and MSTN signaling at the receptor level using a novel receptor dimerization detection technology. We used the dimerization platform to link early receptor binding events to intracellular downstream signaling. This approach was instrumental in revealing differential receptor binding activity within the TGF-ß family. We verified the ActR2b/ALK5 heterodimer as the predominant receptor for GDF11- and MSTN-induced SMAD2/3 signaling. We also showed ALK7 specifically mediates activin-B signaling. We verified follistatin as a potent antagonist to neutralize both SMAD2/3 signaling and receptor dimerization. More remarkably, we showed that the two related antagonists, growth and differentiation factor-associated serum protein (GASP)-1 and GASP2, differentially regulate GDF11 (and MSTN) signaling. GASP1 blocks both receptor dimerization and downstream signaling. However, GASP2 blocks only downstream signaling without interference from receptor dimerization. Our data strongly suggest that physical binding of GDF11 (and MSTN) to both ActR2b and ALK5 receptors is required for initiation of signaling.


Asunto(s)
Receptores de Factores de Crecimiento Transformadores beta/metabolismo , Factor de Crecimiento Transformador beta/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/metabolismo , Proteínas Morfogenéticas Óseas/metabolismo , Factores de Diferenciación de Crecimiento/metabolismo , Células Hep G2 , Humanos , Miostatina/metabolismo , Unión Proteica , Multimerización de Proteína , Proteínas Serina-Treonina Quinasas/química , Proteínas Serina-Treonina Quinasas/metabolismo , Estructura Cuaternaria de Proteína , Receptor Tipo I de Factor de Crecimiento Transformador beta , Receptores de Factores de Crecimiento Transformadores beta/química , Transducción de Señal , Proteína Smad2/metabolismo , Proteína smad3/metabolismo , Especificidad por Sustrato
3.
Acta Crystallogr F Struct Biol Commun ; 71(Pt 9): 1161-8, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26323303

RESUMEN

Co-crystals of the bovine Arp2/3 complex with the CA motif from N-WASP in two new space groups were analyzed by X-ray diffraction. The crystals in the orthorhombic space group P212121 contained one complex per asymmetric unit, with unit-cell parameters a = 105.48, b = 156.71, c = 177.84 Å, and diffracted to 3.9 Šresolution. The crystals in the tetragonal space group P41 contained two complexes per asymmetric unit, with unit-cell parameters a = b = 149.93, c = 265.91 Å, and diffracted to 5.0 Šresolution. The electron-density maps of both new crystal forms had densities for small segments of subdomains 1 and 2 of Arp2. Both maps had density at the binding site on Arp3 for the C-terminal EWE tripeptide from N-WASP and a binding site proposed for the C motif of N-WASP in the barbed-end groove of Arp2. The map from the tetragonal crystal form had density near the barbed end of Arp3 that may correspond to the C helix of N-WASP. The noise levels and the low resolution of the maps made the assignment of specific molecular structures for any of these CA peptides impossible.


Asunto(s)
Complejo 2-3 Proteico Relacionado con la Actina/química , Proteína 2 Relacionada con la Actina/química , Proteína del Síndrome de Wiskott-Aldrich/metabolismo , Secuencias de Aminoácidos , Animales , Sitios de Unión , Bovinos , Cristalización , Cristalografía por Rayos X , Electricidad Estática
4.
J Biol Chem ; 288(4): 2464-74, 2013 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-23223240

RESUMEN

Phosphorylation of the actin-related protein 2 (Arp2) subunit of the Arp2/3 complex on evolutionarily conserved threonine and tyrosine residues was recently identified and shown to be necessary for nucleating activity of the Arp2/3 complex and membrane protrusion of Drosophila cells. Here we use the Dictyostelium diploid system to replace the essential Arp2 protein with mutants that cannot be phosphorylated at Thr-235/6 and Tyr-200. We found that aggregation of the resulting mutant cells after starvation was substantially slowed with delayed early developmental gene expression and that chemotaxis toward a cAMP gradient was defective with loss of polarity and attenuated F-actin assembly. Chemotaxis toward cAMP was also diminished with reduced cell speed and directionality and shorter pseudopod lifetime when Arp2 phosphorylation mutant cells were allowed to develop longer to a responsive state similar to that of wild-type cells. However, clathrin-mediated endocytosis and chemotaxis under agar to folate in vegetative cells were only subtly affected in Arp2 phosphorylation mutants. Thus, phosphorylation of threonine and tyrosine is important for a subset of the functions of the Arp2/3 complex, in particular an unexpected major role in regulating development.


Asunto(s)
Proteína 2 Relacionada con la Actina/química , AMP Cíclico/metabolismo , Dictyostelium/metabolismo , Citoesqueleto de Actina/metabolismo , Actinas/metabolismo , Alelos , Animales , Movimiento Celular , Quimiotaxis , Endocitosis , Modelos Biológicos , Mutación , Fosforilación , Espectroscopía Infrarroja por Transformada de Fourier/métodos , Tirosina/química
5.
EMBO J ; 31(1): 236-47, 2012 Jan 04.
Artículo en Inglés | MEDLINE | ID: mdl-21934650

RESUMEN

Arp2/3 complex initiates the growth of branched actin-filament networks by inducing actin polymerization from the sides of pre-existing filaments. Nucleation promoting factors (NPFs) are essential for the branching reaction through interactions with the Arp2/3 complex prior to branch formation. The modes by which NPFs bind Arp2/3 complex and associated conformational changes have remained elusive. Here, we used electron microscopy to determine three-dimensional structures at ~2 nm resolution of Arp2/3 complex with three different bound NPFs: N-WASp, Scar-VCA and cortactin. All of these structures adopt a conformation with the two actin-related proteins in an actin-filament-like dimer and the NPF bound to the pointed end. Distance constraints derived by fluorescence resonance energy transfer independently verified the NPF location. Furthermore, all bound NPFs partially occlude the actin-filament binding site, suggesting that additional local structural rearrangements are required in the pathway of Arp2/3 complex activation to allow branch formation.


Asunto(s)
Proteína 2 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/química , Proteínas Fúngicas/química , Proteínas Protozoarias/química , Familia de Proteínas del Síndrome de Wiskott-Aldrich/química , Acanthamoeba , Sitios de Unión , Microscopía Electrónica , Modelos Moleculares , Conformación Proteica , Saccharomycetales
6.
J Mol Biol ; 416(1): 148-61, 2012 Feb 10.
Artículo en Inglés | MEDLINE | ID: mdl-22206989

RESUMEN

We investigated the structure, properties and dynamics of the actin filament branch junction formed by actin-related protein (Arp) 2/3 complex using all-atom molecular dynamics (MD) simulations based on a model fit to a reconstruction from electron tomograms. Simulations of the entire structure consisting of 31 protein subunits together with solvent molecules containing ∼3 million atoms were performed for an aggregate time of 175 ns. One 75-ns simulation of the original reconstruction was compared to two 50-ns simulations of alternate structures, showing that the hypothesized branch junction structure is very stable. Our simulations revealed that the interface between Arp2/3 complex and the mother actin filament features a large number of salt bridges and hydrophobic contacts, many of which are dynamic and formed/broken on the timescale of the simulation. The simulations suggest that the DNase binding loops in Arp3, and possibly Arp2, form stabilizing contacts with the mother filament. Unbiased comparison of models sampled from the MD simulation trajectory with the primary experimental electron tomography data identified regions were snapshots from the simulation provide atomic details of the model structures and also pinpoints regions where the initial modeling based on the electron tomogram reconstruction may be suboptimal.


Asunto(s)
Citoesqueleto de Actina/química , Complejo 2-3 Proteico Relacionado con la Actina/química , Proteína 2 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/química , Simulación de Dinámica Molecular , Desoxirribonucleasas/metabolismo , Enlace de Hidrógeno , Modelos Moleculares , Unión Proteica/fisiología , Estructura Terciaria de Proteína , Subunidades de Proteína
7.
PLoS Comput Biol ; 7(11): e1002226, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22125478

RESUMEN

Actin filament assembly by the actin-related protein (Arp) 2/3 complex is necessary to build many cellular structures, including lamellipodia at the leading edge of motile cells and phagocytic cups, and to move endosomes and intracellular pathogens. The crucial role of the Arp2/3 complex in cellular processes requires precise spatiotemporal regulation of its activity. While binding of nucleation-promoting factors (NPFs) has long been considered essential to Arp2/3 complex activity, we recently showed that phosphorylation of the Arp2 subunit is also necessary for Arp2/3 complex activation. Using molecular dynamics simulations and biochemical assays with recombinant Arp2/3 complex, we now show how phosphorylation of Arp2 induces conformational changes permitting activation. The simulations suggest that phosphorylation causes reorientation of Arp2 relative to Arp3 by destabilizing a network of salt-bridge interactions at the interface of the Arp2, Arp3, and ARPC4 subunits. Simulations also suggest a gain-of-function ARPC4 mutant that we show experimentally to have substantial activity in the absence of NPFs. We propose a model in which a network of auto-inhibitory salt-bridge interactions holds the Arp2 subunit in an inactive orientation. These auto-inhibitory interactions are destabilized upon phosphorylation of Arp2, allowing Arp2 to reorient to an activation-competent state.


Asunto(s)
Complejo 2-3 Proteico Relacionado con la Actina/metabolismo , Proteína 2 Relacionada con la Actina/metabolismo , Procesamiento Proteico-Postraduccional , Citoesqueleto de Actina/química , Citoesqueleto de Actina/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/genética , Complejo 2-3 Proteico Relacionado con la Actina/química , Complejo 2-3 Proteico Relacionado con la Actina/genética , Humanos , Simulación de Dinámica Molecular , Mutación , Fosforilación , Polimerizacion , Conformación Proteica
8.
Proc Natl Acad Sci U S A ; 108(33): E463-71, 2011 Aug 16.
Artículo en Inglés | MEDLINE | ID: mdl-21676862

RESUMEN

Actin-related protein (Arp) 2/3 complex mediates the formation of actin filament branches during endocytosis and at the leading edge of motile cells. The pathway of branch formation is ambiguous owing to uncertainty regarding the stoichiometry and location of VCA binding sites on Arp2/3 complex. Isothermal titration calorimetry showed that the CA motif from the C terminus of fission yeast WASP (Wsp1p) bound to fission yeast and bovine Arp2/3 complex with a stoichiometry of 2 to 1 and very different affinities for the two sites (K(d)s of 0.13 and 1.6 µM for fission yeast Arp2/3 complex). Equilibrium binding, kinetic, and cross-linking experiments showed that (i) CA at high-affinity site 1 inhibited Arp2/3 complex binding to actin filaments, (ii) low-affinity site 2 had a higher affinity for CA when Arp2/3 complex was bound to actin filaments, and (iii) Arp2/3 complex had a much higher affinity for free CA than VCA cross-linked to an actin monomer. Crystal structures showed the C terminus of CA bound to the low-affinity site 2 on Arp3 of bovine Arp2/3 complex. The C helix is likely to bind to the barbed end groove of Arp3 in a position for VCA to deliver the first actin subunit to the daughter filament.


Asunto(s)
Proteína 2 Relacionada con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/metabolismo , Bovinos/metabolismo , Proteínas de Schizosaccharomyces pombe/metabolismo , Schizosaccharomyces/metabolismo , Proteína del Síndrome de Wiskott-Aldrich/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/química , Animales , Sitios de Unión , Cristalografía por Rayos X , Polimerizacion , Dominios y Motivos de Interacción de Proteínas , Estructura Cuaternaria de Proteína , Schizosaccharomyces/química , Proteínas de Schizosaccharomyces pombe/química , Termodinámica , Proteína del Síndrome de Wiskott-Aldrich/química
9.
Exp Cell Res ; 317(6): 812-22, 2011 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-21146522

RESUMEN

Arp2/3 complex is an actin polymerization nucleator and localized in the leading protrusions of migrating cells. It has been unclear how this complex is targeted to the protrusions and whether its localization is functionally important. We previously demonstrated that mRNAs encoding for the subunits of the complex were localized in the protrusions of fibroblasts, suggesting a mechanism to target the complex to the protrusions. We here present data demonstrating the importance of Arp2/3 complex mRNA localization in directional cell migration. Using a novel mechanism by which Dia1 mRNA is targeted to the perinuclear endoplasmic reticulum, we redirected the mRNA encoding Arp2, a subunit of the Arp2/3 complex, to the perinuclear region in fibroblasts. Knockdown of Arp2 alone caused dramatic reduction of the complex and resulted in narrow protrusions, increased random cell migration speed and loss of directionality. Rescue with a protrusion-localizing Arp2 mRNA restored normal cell migration behavior, whereas rescue with a mis-localizing Arp2 mRNA failed to restore speed and directionality. These results demonstrate that localization of Arp2/3 complex mRNAs in the leading protrusions is functionally important for directional cell migration.


Asunto(s)
Proteína 2 Relacionada con la Actina/metabolismo , Movimiento Celular/fisiología , ARN Mensajero/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/genética , Proteína 3 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/fisiología , Animales , Western Blotting , Núcleo Celular/metabolismo , Células Cultivadas , Pollos , Fibroblastos/química , Técnicas de Silenciamiento del Gen , Hibridación in Situ , Transporte de Proteínas
10.
Biophys J ; 99(8): 2568-76, 2010 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-20959098

RESUMEN

Actin-related protein 2 and 3 (Arp2/3) complex forms a dendritic network of actin filaments during endocytosis and cellular locomotion by nucleating branches on the sides of preexisting actin filaments. Reconstructions of electron tomograms of branch junctions show how Arp2/3 complex anchors the branch, with Arp2 and Arp3 serving as the first two subunits of the branch. Our aim was to characterize the massive conformational change that moves Arp2 ∼30 Å from its position in crystal structures of inactive Arp2/3 complex to its position in branch junctions. Starting with the inactive crystal structure, we used atomistic-scale molecular dynamics simulations to drive Arp2 toward the position observed in branch junctions. When we applied forces to Arp2 while restraining Arp3, one block of structure (Arp2, subunit ARPC1, the globular domain of ARPC4 and ARPC5) rotated counterclockwise by 30° around a pivot point in an α-helix of ARPC4 (Glu8¹-Asn¹°°) to align Arp2 next to Arp3 in a second block of structure including ARPC3 and the globular domains of ARPC2. This active structure buried more surface area than the inactive conformation. The complex was stable in all simulations. In most simulations, collisions of subdomain 2 of Arp2 with Arp3 impeded the movement of Arp2.


Asunto(s)
Complejo 2-3 Proteico Relacionado con la Actina/química , Complejo 2-3 Proteico Relacionado con la Actina/metabolismo , Simulación de Dinámica Molecular , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/metabolismo , Movimiento , Estabilidad Proteica , Estructura Terciaria de Proteína , Subunidades de Proteína/química , Subunidades de Proteína/metabolismo
11.
Proc Natl Acad Sci U S A ; 107(18): 8159-64, 2010 May 04.
Artículo en Inglés | MEDLINE | ID: mdl-20404198

RESUMEN

The Arp2/3 complex polymerizes new actin filaments from the sides of existing filaments, forming Y-branched networks that are critical for actin-mediated force generation. Binding of the Arp2/3 complex to the sides of actin filaments is therefore central to its actin-nucleating and branching activities. Although a model of the Arp2/3 complex in filament branches has been proposed based on electron microscopy, this model has not been validated using independent approaches, and the functional importance of predicted actin-binding residues has not been extensively tested. Using a combination of molecular dynamics and protein-protein docking simulations, we derived an independent structural model of the interaction between two subunits of the Arp2/3 complex that are key to actin binding, ARPC2 and ARPC4, and the side of an actin filament. This model agreed remarkably well with the previous results from electron microscopy. Complementary mutagenesis experiments revealed numerous residues in ARPC2 and ARPC4 that were required for the biochemical activity of the entire complex. Functionally critical residues clustered together and defined a surface that was predicted by protein-protein docking to be buried in the interaction with actin. Moreover, key residues at this interface were crucial for actin nucleation and Y-branching, high-affinity F-actin binding, and Y-branch stability, demonstrating that the affinity of Arp2/3 complex for F actin independently modulates branch formation and stability. Our results highlight the utility of combining computational and experimental approaches to study protein-protein interactions and provide a basis for further elucidating the role of F-actin binding in Arp2/3 complex activation and function.


Asunto(s)
Citoesqueleto de Actina/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/metabolismo , Actinas/metabolismo , Humanos , Modelos Moleculares , Unión Proteica , Estructura Cuaternaria de Proteína
12.
J Am Soc Mass Spectrom ; 21(6): 1050-60, 2010 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-20207164

RESUMEN

The study of isolated protein complexes has greatly benefited from recent advances in mass spectrometry instrumentation and quantitative, isotope labeling techniques. The comprehensive characterization of protein complex components and quantification of their relative abundance relies heavily upon maximizing protein and peptide sequence information obtained from MS and tandem MS studies. Recent work has shown that using a metalloendopeptidase, Lys-N, for proteomic analysis of biological protein mixtures produces complementary protein sequence information compared with trypsin digestion alone. Here, we have investigated the suitability of Lys-N proteolysis for use with MALDI mass spectrometry to characterize the yeast Arp2 complex and E. coli PAP I protein interactions. Although Lys-N digestion resulted in an average decrease in protein sequence coverage of approximately 30% compared with trypsin digestion, CID analysis of singly-charged Lys-N peptides yielded a more extensive b-ions series compared with complementary tryptic peptides. Taking advantage of this improved fragmentation pattern, we utilized differential (15)N/(14)N guanidination of Lys-N peptides and MALDI-MS/MS analysis to relatively quantify the changes in PAP I associations due to deletion of sprE, previously shown to regulate PAP I-dependent polyadenylation. Overall, this Lys-N/guanidination integrative approach is applicable for functional proteomic studies utilizing MALDI mass spectrometry analysis, as it provides an effective and economical mean for relative quantification of proteins in conjunction with increased sensitivity of detection and fragmentation efficiency.


Asunto(s)
Guanidina/química , Lisina/química , Metaloendopeptidasas/química , Fragmentos de Péptidos/metabolismo , Mapeo Peptídico/métodos , Proteómica/métodos , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción/métodos , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/metabolismo , Secuencia de Aminoácidos , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Guanidina/metabolismo , Lisina/metabolismo , Metaloendopeptidasas/metabolismo , Compuestos de Metilurea , Isótopos de Nitrógeno/química , Isótopos de Nitrógeno/metabolismo , Fragmentos de Péptidos/química , Proteínas Represoras/química , Proteínas Represoras/metabolismo , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/metabolismo , Espectrometría de Masas en Tándem/métodos , Tripsina/metabolismo
13.
J Biol Chem ; 285(11): 8481-91, 2010 Mar 12.
Artículo en Inglés | MEDLINE | ID: mdl-20071330

RESUMEN

The Arp2/3 complex is a conserved seven-subunit actin-nucleating machine activated by WASp (Wiskott Aldrich syndrome protein). Despite its central importance in a broad range of cellular processes, many critical aspects of the mechanism of the Arp2/3 complex have yet to be resolved. In particular, some of the individual subunits in the complex have not been assigned clear functional roles, including p40/ARPC1. Here, we dissected the structure and function of Saccharomyces cerevisiae p40/ARPC1, which is encoded by the essential ARC40 gene, by analyzing 39 integrated alleles that target its conserved surfaces. We identified three distinct sites on p40/ARPC1 required for function in vivo: one site contacts p19/ARPC4, one contacts p15/ARPC5, and one site resides in an extended structural "arm" of p40/ARPC1. Using a novel strategy, we purified the corresponding lethal mutant Arp2/3 complexes from yeast and compared their actin nucleation activities. Lethal mutations at the contact with p19/ARPC4 specifically impaired WASp-induced nucleation. In contrast, lethal mutations at the contact with p15/ARPC5 led to unregulated ("leaky") nucleation in the absence of WASp. Lethal mutations in the extended arm drastically reduced nucleation, and the same mutations disrupted the ability of the purified p40/ARPC1 arm domain to bind the VCA domain of WASp. Together, these data indicate that p40/ARPC1 performs at least three distinct, essential functions in regulating Arp2/3 complex-mediated actin assembly: 1) suppression of spontaneous nucleation by the Arp2/3 complex, which requires proper contacts with p15/ARPC5; 2) propagation of WASp activation signals via contacts with p19/ARPC2; and 3) direct facilitation of actin nucleation through interactions of the extended arm with the VCA domain of WASp.


Asunto(s)
Citoesqueleto de Actina/metabolismo , Proteína 2 Relacionada con la Actina/metabolismo , Actinas/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Proteína del Síndrome de Wiskott-Aldrich/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/genética , Proteína 3 Relacionada con la Actina/genética , Proteína 3 Relacionada con la Actina/metabolismo , Alanina/genética , Secuencia de Aminoácidos , Animales , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Unión Proteica/fisiología , Estructura Cuaternaria de Proteína , Estructura Terciaria de Proteína , Conejos , Saccharomyces cerevisiae , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Relación Estructura-Actividad , Proteína del Síndrome de Wiskott-Aldrich/química , Proteína del Síndrome de Wiskott-Aldrich/genética
14.
Nature ; 460(7258): 1031-4, 2009 Aug 20.
Artículo en Inglés | MEDLINE | ID: mdl-19648907

RESUMEN

Polymerization of actin filaments directed by the actin-related protein (Arp)2/3 complex supports many types of cellular movements. However, questions remain regarding the relative contributions of Arp2/3 complex versus other mechanisms of actin filament nucleation to processes such as path finding by neuronal growth cones; this is because of the lack of simple methods to inhibit Arp2/3 complex reversibly in living cells. Here we describe two classes of small molecules that bind to different sites on the Arp2/3 complex and inhibit its ability to nucleate actin filaments. CK-0944636 binds between Arp2 and Arp3, where it appears to block movement of Arp2 and Arp3 into their active conformation. CK-0993548 inserts into the hydrophobic core of Arp3 and alters its conformation. Both classes of compounds inhibit formation of actin filament comet tails by Listeria and podosomes by monocytes. Two inhibitors with different mechanisms of action provide a powerful approach for studying the Arp2/3 complex in living cells.


Asunto(s)
Complejo 2-3 Proteico Relacionado con la Actina/antagonistas & inhibidores , Citoesqueleto de Actina/efectos de los fármacos , Citoesqueleto de Actina/metabolismo , Proteína 2 Relacionada con la Actina/antagonistas & inhibidores , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/metabolismo , Complejo 2-3 Proteico Relacionado con la Actina/química , Complejo 2-3 Proteico Relacionado con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/antagonistas & inhibidores , Proteína 3 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/metabolismo , Actinas/química , Actinas/metabolismo , Animales , Biopolímeros/química , Biopolímeros/metabolismo , Bovinos , Línea Celular , Cristalografía por Rayos X , Humanos , Interacciones Hidrofóbicas e Hidrofílicas , Indoles/clasificación , Indoles/metabolismo , Indoles/farmacología , Listeria/fisiología , Modelos Moleculares , Monocitos/inmunología , Conformación Proteica/efectos de los fármacos , Schizosaccharomyces , Tiazoles/química , Tiazoles/clasificación , Tiazoles/metabolismo , Tiazoles/farmacología , Tiofenos/clasificación , Tiofenos/metabolismo , Tiofenos/farmacología
15.
J Biol Chem ; 283(39): 26490-8, 2008 Sep 26.
Artículo en Inglés | MEDLINE | ID: mdl-18640983

RESUMEN

Arp2/3 (actin-related protein 2/3) complex is a seven-subunit complex that nucleates branched actin filaments in response to cellular signals. Nucleation-promoting factors such as WASp/Scar family proteins activate the complex by facilitating the activating conformational change and recruiting the first actin monomer for the daughter branch. Here we address the role of the Arp2 subunit in the function of Arp2/3 complex by isolating a version of the complex lacking Arp2 (Arp2Delta Arp2/3 complex) from fission yeast. An x-ray crystal structure of the DeltaArp2 Arp2/3 complex showed that the rest of the complex is unperturbed by the loss of Arp2. However, the Arp2Delta Arp2/3 complex was inactive in actin nucleation assays, indicating that Arp2 is essential to form a branch. A fluorescence anisotropy assay showed that Arp2 does not contribute to the affinity of the complex for Wsp1-VCA, a Schizosaccharomyces pombe nucleation-promoting factor protein. Fluorescence resonance energy transfer experiments showed that the loss of Arp2 does not prevent VCA from recruiting an actin monomer to the complex. Truncation of the N terminus of ARPC5, the smallest subunit in the complex, increased the yield of Arp2Delta Arp2/3 complex during purification but did not compromise nucleation activity of the full Arp2/3 complex.


Asunto(s)
Proteína 2 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/química , Schizosaccharomyces/química , Proteína 2 Relacionada con la Actina/genética , Proteína 2 Relacionada con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/genética , Proteína 3 Relacionada con la Actina/metabolismo , Actinas/química , Actinas/genética , Actinas/metabolismo , Cristalografía por Rayos X , Estructura Cuaternaria de Proteína/fisiología , Estructura Terciaria de Proteína/fisiología , Schizosaccharomyces/genética , Schizosaccharomyces/metabolismo , Proteínas de Schizosaccharomyces pombe/química , Proteínas de Schizosaccharomyces pombe/genética , Proteínas de Schizosaccharomyces pombe/metabolismo , Familia de Proteínas del Síndrome de Wiskott-Aldrich/química , Familia de Proteínas del Síndrome de Wiskott-Aldrich/genética , Familia de Proteínas del Síndrome de Wiskott-Aldrich/metabolismo
16.
Biochemistry ; 47(24): 6460-7, 2008 Jun 17.
Artículo en Inglés | MEDLINE | ID: mdl-18489122

RESUMEN

The cyclic peptide phalloidin binds and stabilizes actin filaments. It is widely used in studies of actin filament assembly, including analysis of branch formation by Arp2/3 complex, but its influence on the branching reaction has not been considered. Here we show that rhodamine-phalloidin binds both Arp2/3 complex and the VCA domain of Arp2/3 complex activator, hWASp, with dissociation equilibrium constants of about 100 nM. Not only does phalloidin promote nucleation of pure actin monomers but it also dramatically stimulates branch formation by actin, Arp2/3 complex, and hWASp-VCA more than 10-fold and inhibits dissociation of branches. Therefore, the appearance of more branches in samples treated with rhodamine-phalloidin arises from multiple influences of the peptide on both the formation and dissociation of branches.


Asunto(s)
Complejo 2-3 Proteico Relacionado con la Actina/química , Complejo 2-3 Proteico Relacionado con la Actina/metabolismo , Actinas/metabolismo , Faloidina/química , Faloidina/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/metabolismo , Actinas/química , Secuencia de Aminoácidos , Animales , Bovinos , Pollos , Polarización de Fluorescencia , Microscopía Fluorescente , Datos de Secuencia Molecular , Unión Proteica , Estructura Terciaria de Proteína , Proteínas Recombinantes de Fusión/biosíntesis , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo , Proteína del Síndrome de Wiskott-Aldrich/biosíntesis , Proteína del Síndrome de Wiskott-Aldrich/genética , Proteína del Síndrome de Wiskott-Aldrich/metabolismo
17.
Mol Biol Cell ; 19(1): 297-307, 2008 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17978096

RESUMEN

The yeast protein Pan1p plays essential roles in actin cytoskeleton organization and endocytosis. It couples endocytosis with actin polymerization through its dual function in endocytic complex assembly and activation of the actin polymerization initiation complex Arp2/3p. Phosphorylation of Pan1p and other components of the endocytic complex by the kinase Prk1p leads to disassembly of the coat complex and the termination of vesicle-associated actin polymerization. A homologous kinase, Ark1p, has also been implicated in this regulatory process. In this study, we investigated the distinct roles of Prk1p and Ark1p. We found that the nonkinase domains determined the functional specificity of the two kinases. A short region located adjacent to the kinase domain unique to Prk1p was found to be required for the kinase to interact with Arp2p. Further studies demonstrated that the Prk1p-Arp2p interaction is critical for down-regulation of Pan1p. These findings reveal that, in addition to its role in the nucleation of actin polymerization, Arp2p also mediates what appears to be an auto-regulatory mechanism possibly adapted for efficient coordination of actin assembly and disassembly during endocytosis.


Asunto(s)
Proteína 2 Relacionada con la Actina/metabolismo , Actinas/metabolismo , Endocitosis , Proteínas Serina-Treonina Quinasas/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/citología , Saccharomyces cerevisiae/enzimología , Proteína 2 Relacionada con la Actina/química , Secuencias de Aminoácidos , Sitios de Unión , Proteínas Portadoras/metabolismo , Proteínas del Citoesqueleto , Proteínas Fúngicas/metabolismo , Proteínas de Microfilamentos , Mutación/genética , Fosforilación , Unión Proteica , Proteínas Serina-Treonina Quinasas/química , Estructura Terciaria de Proteína , Transporte de Proteínas , Proteínas de Saccharomyces cerevisiae/química
18.
BMC Genomics ; 8: 82, 2007 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-17391512

RESUMEN

BACKGROUND: A Paramecium tetraurelia pilot genome project, the subsequent sequencing of a Megabase chromosome as well as the Paramecium genome project aimed at gaining insight into the genome of Paramecium. These cells display a most elaborate membrane trafficking system, with distinct, predictable pathways in which actin could participate. Previously we had localized actin in Paramecium; however, none of the efforts so far could proof the occurrence of actin in the cleavage furrow of a dividing cell, despite the fact that actin is unequivocally involved in cell division. This gave a first hint that Paramecium may possess actin isoforms with unusual characteristics. The genome project gave us the chance to search the whole Paramecium genome, and, thus, to identify and characterize probably all actin isoforms in Paramecium. RESULTS: The ciliated protozoan, P. tetraurelia, contains an actin multigene family with at least 30 members encoding actin, actin-related and actin-like proteins. They group into twelve subfamilies; a large subfamily with 10 genes, seven pairs and one trio with > 82% amino acid identity, as well as three single genes. The different subfamilies are very distinct from each other. In comparison to actins in other organisms, P. tetraurelia actins are highly divergent, with identities topping 80% and falling to 30%. We analyzed their structure on nucleotide level regarding the number and position of introns. On amino acid level, we scanned the sequences for the presence of actin consensus regions, for amino acids of the intermonomer interface in filaments, for residues contributing to ATP binding, and for known binding sites for myosin and actin-specific drugs. Several of those characteristics are lacking in several subfamilies. The divergence of P. tetraurelia actins and actin-related proteins between different P. tetraurelia subfamilies as well as with sequences of other organisms is well represented in a phylogenetic tree, where P. tetraurelia sequences only partially cluster. CONCLUSION: Analysis of different features on nucleotide and amino acid level revealed striking differences in isoforms of actin and actin-related proteins in P. tetraurelia, both within the organism and in comparison to other organisms. This diversification suggests unprecedented specification in localization and function within a unicellular eukaryote.


Asunto(s)
Actinas/química , Actinas/genética , Familia de Multigenes/genética , Paramecium tetraurelia/química , Paramecium tetraurelia/genética , Proteínas Protozoarias/química , Proteínas Protozoarias/genética , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/genética , Proteína 2 Relacionada con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/genética , Proteína 3 Relacionada con la Actina/metabolismo , Actinas/metabolismo , Adenosina Trifosfato/metabolismo , Animales , Secuencia de Consenso/genética , Filogenia , Proyectos Piloto , Unión Proteica/genética , Isoformas de Proteínas/química , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteínas Protozoarias/metabolismo
19.
J Biol Chem ; 282(1): 426-35, 2007 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-17085436

RESUMEN

IQGAP1 is a conserved modular protein overexpressed in cancer and involved in organizing actin and microtubules in motile processes such as adhesion, migration, and cytokinesis. A variety of proteins have been shown to interact with IQGAP1, including the small G proteins Rac1 and Cdc42, actin, calmodulin, beta-catenin, the microtubule plus end-binding proteins CLIP170 (cytoplasmic linker protein) and adenomatous polyposis coli. However, the molecular mechanism by which IQGAP1 controls actin dynamics in cell motility is not understood. Quantitative co-localization analysis and down-regulation of IQGAP1 revealed that IQGAP1 controls the co-localization of N-WASP with the Arp2/3 complex in lamellipodia. Co-immunoprecipitation supports an in vivo link between IQGAP1 and N-WASP. Pull-down experiments and kinetic assays of branched actin polymerization with N-WASP and Arp2/3 complex demonstrated that the C-terminal half of IQGAP1 activates N-WASP by interacting with its BR-CRIB domain in a Cdc42-like manner, whereas the N-terminal half of IQGAP1 antagonizes this activation by association with a C-terminal region of IQGAP1. We propose that signal-induced relief of the autoinhibited fold of IQGAP1 allows activation of N-WASP to stimulate Arp2/3-dependent actin assembly.


Asunto(s)
Proteína 2 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/química , Actinas/química , Proteína Neuronal del Síndrome de Wiskott-Aldrich/química , Proteínas Activadoras de ras GTPasa/química , Animales , Perros , Regulación Neoplásica de la Expresión Génica , Humanos , Inmunoprecipitación , Proteínas Asociadas a Microtúbulos/química , Modelos Biológicos , Proteínas de Neoplasias/química , Unión Proteica , Desnaturalización Proteica , Estructura Terciaria de Proteína
20.
J Mol Biol ; 359(4): 840-7, 2006 Jun 16.
Artículo en Inglés | MEDLINE | ID: mdl-16697006

RESUMEN

Cortactin and WASP activate Arp2/3-mediated actin filament nucleation and branching. However, different mechanisms underlie activation by the two proteins, which rely on distinct actin-binding modules and modes of binding to actin filaments. It is generally thought that cortactin binds to "mother" actin filaments, while WASP donates actin monomers to Arp2/3-generated "daughter" filament branches. Interestingly, cortactin also binds WASP in addition to F-actin and the Arp2/3 complex. However, the structural basis for the role of cortactin in filament branching remains unknown, making interpretation difficult. Here, electron microscopy and 3D reconstruction were carried out on F-actin decorated with the actin-binding repeating domain of cortactin, revealing conspicuous density on F-actin attributable to cortactin that is located on a consensus-binding site on subdomain-1 of actin subunits. Strikingly, the binding of cortactin widens the gap between the two long-pitch filament strands. Although other proteins have been found to alter the structure of the filament, the cortactin-induced conformational change appears unique. The results are consistent with a mechanism whereby alterations of the F-actin structure may facilitate recruitment of the Arp2/3 complex to the "mother" filament in the cortex of cells. In addition, cortactin may act as a structural adapter protein, stabilizing nascent filament branches while mediating the simultaneous recruitment of Arp2/3 and WASP.


Asunto(s)
Actinas/química , Actinas/metabolismo , Cortactina/química , Cortactina/metabolismo , Proteína 2 Relacionada con la Actina/química , Proteína 2 Relacionada con la Actina/metabolismo , Proteína 3 Relacionada con la Actina/química , Proteína 3 Relacionada con la Actina/metabolismo , Animales , Sitios de Unión , Imagenología Tridimensional , Ratones , Microscopía Electrónica , Modelos Moleculares , Complejos Multiproteicos/química , Conformación Proteica , Estructura Terciaria de Proteína , Secuencias Repetitivas de Aminoácido
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