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1.
J Biol Chem ; 300(7): 107476, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38879013

RESUMEN

DJ-1, a causative gene for hereditary recessive Parkinsonism, is evolutionarily conserved across eukaryotes and prokaryotes. Structural analyses of DJ-1 and its homologs suggested the 106th Cys is a nucleophilic cysteine functioning as the catalytic center of hydratase or hydrolase activity. Indeed, DJ-1 and its homologs can convert highly electrophilic α-oxoaldehydes such as methylglyoxal into α-hydroxy acids as hydratase in vitro, and oxidation-dependent ester hydrolase (esterase) activity has also been reported for DJ-1. The mechanism underlying such plural activities, however, has not been fully characterized. To address this knowledge gap, we conducted a series of biochemical assays assessing the enzymatic activity of DJ-1 and its homologs. We found no evidence for esterase activity in any of the Escherichia coli DJ-1 homologs. Furthermore, contrary to previous reports, we found that oxidation inactivated rather than facilitated DJ-1 esterase activity. The E. coli DJ-1 homolog HchA possesses phenylglyoxalase and methylglyoxalase activities but lacks esterase activity. Since evolutionary trace analysis identified the 186th H as a candidate residue involved in functional differentiation between HchA and DJ-1, we focused on H186 of HchA and found that an esterase activity was acquired by H186A mutation. Introduction of reverse mutations into the equivalent position in DJ-1 (A107H) selectively eliminated its esterase activity without compromising α-oxoaldehyde hydratase activity. The obtained results suggest that differences in the amino acid sequences near the active site contributed to acquisition of esterase activity in vitro and provide an important clue to the origin and significance of DJ-1 esterase activity.


Asunto(s)
Escherichia coli , Enfermedad de Parkinson , Proteína Desglicasa DJ-1 , Proteína Desglicasa DJ-1/metabolismo , Proteína Desglicasa DJ-1/genética , Proteína Desglicasa DJ-1/química , Humanos , Escherichia coli/genética , Escherichia coli/metabolismo , Enfermedad de Parkinson/genética , Enfermedad de Parkinson/metabolismo , Esterasas/metabolismo , Esterasas/genética , Esterasas/química , Proteínas de Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/química , Evolución Molecular , Oxidación-Reducción
2.
Aging Cell ; 23(5): e14124, 2024 05.
Artículo en Inglés | MEDLINE | ID: mdl-38380563

RESUMEN

DJ-1, also known as Parkinson's disease protein 7 (Park7), is a multifunctional protein that regulates oxidative stress and mitochondrial function. Dysfunction of DJ-1 is implicated in the pathogenesis of Parkinson's disease (PD). Hyperhomocysteinemia is associated with an increased risk of PD. Here we show that homocysteine thiolactone (HTL), a reactive thioester of homocysteine (Hcy), covalently modifies DJ-1 on the lysine 182 (K182) residue in an age-dependent manner. The N-homocysteinylation (N-hcy) of DJ-1 abolishes its neuroprotective effect against oxidative stress and mitochondrial dysfunction, exacerbating cell toxicity. Blocking the N-hcy of DJ-1 restores its protective effect. These results indicate that the N-hcy of DJ-1 abolishes its neuroprotective effect and promotes the progression of PD. Inhibiting the N-hcy of DJ-1 may exert neuroprotective effect against PD.


Asunto(s)
Homocisteína , Enfermedad de Parkinson , Proteína Desglicasa DJ-1 , Humanos , Línea Celular Tumoral , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/metabolismo , Homocisteína/análogos & derivados , Homocisteína/metabolismo , Enfermedad de Parkinson/metabolismo , Enfermedad de Parkinson/patología , Envejecimiento , Encéfalo/metabolismo , Encéfalo/patología , Oxidación-Reducción , Mitocondrias/metabolismo , Metionina/administración & dosificación , 1-Metil-4-fenil-1,2,3,6-Tetrahidropiridina , Hiperhomocisteinemia/tratamiento farmacológico , Hiperhomocisteinemia/metabolismo , Lisina/metabolismo
3.
Adv Biol Regul ; 88: 100943, 2023 05.
Artículo en Inglés | MEDLINE | ID: mdl-36542983

RESUMEN

DJ-1 has gained extensive attention after being identified in 2003 as a protein implicated in the pathogenesis of early-onset Parkinson's disease. Since then, efforts have revealed versatile DJ-1 functions in reactive oxygen species (ROS) control, transcriptional regulation, chaperone function, fertility, and cell transformation. Herein, we report a novel function of DJ-1 in actin cytoskeletal rearrangements. DJ-1 was identified as a new binding partner of Mena, a protein of the Enah/VASP family, and it promoted cancer cell migration by Mena-dependent actin polymerization and filopodia formation. These results suggest a novel molecular mechanism for DJ-1-dependent cancer cell invasion and metastasis.


Asunto(s)
Actinas , Proteínas de Microfilamentos , Proteína Desglicasa DJ-1 , Animales , Actinas/química , Movimiento Celular , Citoesqueleto , Drosophila/genética , Drosophila/metabolismo , Mamíferos/metabolismo , Proteínas de Microfilamentos/genética , Proteínas de Microfilamentos/metabolismo , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/metabolismo
4.
Proc Natl Acad Sci U S A ; 119(4)2022 01 25.
Artículo en Inglés | MEDLINE | ID: mdl-35046029

RESUMEN

Cells are continuously exposed to potentially dangerous compounds. Progressive accumulation of damage is suspected to contribute to neurodegenerative diseases and aging, but the molecular identity of the damage remains largely unknown. Here we report that PARK7, an enzyme mutated in hereditary Parkinson's disease, prevents damage of proteins and metabolites caused by a metabolite of glycolysis. We found that the glycolytic metabolite 1,3-bisphosphoglycerate (1,3-BPG) spontaneously forms a novel reactive intermediate that avidly reacts with amino groups. PARK7 acts by destroying this intermediate, thereby preventing the formation of proteins and metabolites with glycerate and phosphoglycerate modifications on amino groups. As a consequence, inactivation of PARK7 (or its orthologs) in human cell lines, mouse brain, and Drosophila melanogaster leads to the accumulation of these damaged compounds, most of which have not been described before. Our work demonstrates that PARK7 function represents a highly conserved strategy to prevent damage in cells that metabolize carbohydrates. This represents a fundamental link between metabolism and a type of cellular damage that might contribute to the development of Parkinson's disease.


Asunto(s)
Glucosa/metabolismo , Proteína Desglicasa DJ-1/genética , Proteína Desglicasa DJ-1/metabolismo , Animales , Biomarcadores , Metabolismo de los Hidratos de Carbono , Cromatografía Liquida , Drosophila melanogaster , Técnicas de Silenciamiento del Gen , Ácidos Glicéricos/metabolismo , Glucólisis , Humanos , Espectrometría de Masas , Redes y Vías Metabólicas , Metaboloma , Metabolómica/métodos , Ratones , Enfermedad de Parkinson/etiología , Enfermedad de Parkinson/metabolismo , Enfermedad de Parkinson/patología , Proteína Desglicasa DJ-1/química
5.
Biochem J ; 478(19): 3505-3525, 2021 10 15.
Artículo en Inglés | MEDLINE | ID: mdl-34515295

RESUMEN

DJ-1 is known to play neuroprotective roles by eliminating reactive oxygen species (ROS) as an antioxidant protein. However, the molecular mechanism of DJ-1 function has not been well elucidated. This study explored the structural and functional changes of DJ-1 in response to oxidative stress. Human DJ-1 has three cysteine residues (Cys46, Cys53 and Cys106). We found that, in addition to Cys106, Cys46 is the most reactive cysteine residue in DJ-1, which was identified employing an NPSB-B chemical probe (Ctag) that selectively reacts with redox-sensitive cysteine sulfhydryl. Peroxidatic Cys46 readily formed an intra-disulfide bond with adjacent resolving Cys53, which was identified with nanoUPLC-ESI-q-TOF tandem mass spectrometry (MS/MS) employing DBond algorithm under the non-reducing condition. Mutants (C46A and C53A), not forming Cys46-Cys53 disulfide cross-linking, increased oxidation of Cys106 to sulfinic and sulfonic acids. Furthermore, we found that DJ-1 C46A mutant has distorted unstable structure identified by biochemical assay and employing hydrogen/deuterium exchange-mass spectrometry (HDX-MS) analysis. All three Cys mutants lost antioxidant activities in SN4741 cell, a dopaminergic neuronal cell, unlike WT DJ-1. These findings suggest that all three Cys residues including Cys46-Cys53 disulfide cross-linking are required for maintaining the structural integrity, the regulation process and cellular function as an antioxidant protein. These studies broaden the understanding of regulatory mechanisms of DJ-1 that operate under oxidative conditions.


Asunto(s)
Antioxidantes/química , Antioxidantes/metabolismo , Cisteína/metabolismo , Estrés Oxidativo/genética , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/metabolismo , Reactivos de Enlaces Cruzados/metabolismo , Neuronas Dopaminérgicas/metabolismo , Técnicas de Inactivación de Genes , Células HeLa , Humanos , Espectrometría de Masas de Intercambio de Hidrógeno-Deuterio , Oxidación-Reducción , Proteína Desglicasa DJ-1/genética , Dominios Proteicos , Especies Reactivas de Oxígeno/metabolismo , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Compuestos de Sulfhidrilo/metabolismo , Espectrometría de Masas en Tándem , Transfección
6.
Acta Pharmacol Sin ; 42(7): 1160-1170, 2021 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-33495517

RESUMEN

The PARK7 gene (encode DJ-1 protein) was first discovered as an oncogene and later found to be a causative gene for autosomal recessive early onset Parkinson's disease. DJ-1 has been proposed as a potential therapeutic anticancer target due to its pivotal role in tumorigenesis and cancer progression. Based on the homodimer structure of DJ-1, a series of bis-isatin derivatives with different length linkers were designed, synthesized, and evaluated as dimeric inhibitors targeting DJ-1 homodimer. Among them, DM10 with alkylene chain of C10 displayed the most potent inhibitory activity against DJ-1 deglycase. We further demonstrated that DM10 bound covalently to the homodimer of DJ-1. In human cancer cell lines H1299, MDA-MB-231, BEL7402, and 786-O, DM10 (2.5-20 µM) inhibited the cell growth in a concentration-dependent manner showing better anticancer effects compared with the positive control drug STK793590. In nude mice bearing H1299 cell xenograft, intratumor injection of DM10 (15 mg/kg) produced significantly potent tumor growth inhibition when compared with that caused by STK793590 (30 mg/kg). Moreover, we found that DM10 could significantly enhance N-(4-hydroxyphenyl)retinamide-based apoptosis and erastin-based ferroptosis in H1299 cells. In conclusion, DM10 is identified as a potent inhibitor targeting DJ-1 homodimer with the potential as sensitizing agent for other anticancer drugs, which might provide synergistical therapeutic option for cancer treatment.


Asunto(s)
Antineoplásicos/uso terapéutico , Inhibidores Enzimáticos/uso terapéutico , Isatina/análogos & derivados , Isatina/uso terapéutico , Neoplasias/tratamiento farmacológico , Proteína Desglicasa DJ-1/antagonistas & inhibidores , Animales , Antineoplásicos/síntesis química , Antineoplásicos/farmacología , Apoptosis/efectos de los fármacos , Línea Celular Tumoral , Diseño de Fármacos , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/farmacología , Femenino , Ferroptosis/efectos de los fármacos , Humanos , Isatina/farmacología , Ratones Endogámicos BALB C , Ratones Desnudos , Proteína Desglicasa DJ-1/química , Estructura Cuaternaria de Proteína , Ensayos Antitumor por Modelo de Xenoinjerto
7.
Cell Chem Biol ; 27(9): 1117-1123, 2020 09 17.
Artículo en Inglés | MEDLINE | ID: mdl-32783963

RESUMEN

Glycation, the term for non-enzymatic covalent reactions between aldehyde metabolites and nucleophiles on biopolymers, results in deleterious cellular damage and diseases. Since Parkinsonism-associated protein DJ-1 was proposed as a novel deglycase that directly repairs glycated adducts, it has been considered a major contributor to glycation damage repair. Recently, an interesting debate over the mechanism of glycation repair by DJ-1 has emerged, focusing on whether the substrate of DJ-1 is glycated adducts or the free small aldehydes. The physiological significance of DJ-1 on glycation defense also remains in question. This debate is complicated by the fact that glycated biomolecular adducts are in rapid equilibrium with free aldehydes. Here, we summarize experimental evidence for the two possibilities, highlighting both consistencies and conflicts. We discuss the experimental complexities from a mechanistic perspective, and suggest classes of experiments that should help clarify this debate.


Asunto(s)
Productos Finales de Glicación Avanzada/metabolismo , Proteína Desglicasa DJ-1/metabolismo , Piruvaldehído/metabolismo , Cisteína/metabolismo , Productos Finales de Glicación Avanzada/química , Humanos , Cinética , Ácidos Nucleicos/química , Ácidos Nucleicos/metabolismo , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/genética , Proteínas/química , Proteínas/metabolismo , Piruvaldehído/química , Especificidad por Sustrato
8.
Neurobiol Dis ; 134: 104629, 2020 02.
Artículo en Inglés | MEDLINE | ID: mdl-31669752

RESUMEN

The loss of native function of the DJ-1 protein has been linked to the development of Parkinson's (PD) and other neurodegenerative diseases. Here we show that DJ-1 aggregates into ß-sheet structured soluble and fibrillar aggregates in vitro under physiological conditions and that this process is promoted by the oxidation of its catalytic Cys106 residue. This aggregation resulted in the loss of its native biochemical glyoxalase function and in addition oxidized DJ-1 aggregates were observed to localize within Lewy bodies, neurofibrillary tangles and amyloid plaques in human PD and Alzheimer's (AD) patients' post-mortem brain tissue. These findings suggest that the aggregation of DJ-1 may be a critical player in the development of the pathology of PD and AD and demonstrate that loss of DJ-1 function can happen through DJ-1 aggregation. This could then contribute to AD and PD disease onset and progression.


Asunto(s)
Enfermedad de Alzheimer/patología , Encéfalo/patología , Enfermedad de Parkinson/patología , Agregación Patológica de Proteínas/metabolismo , Proteína Desglicasa DJ-1/metabolismo , Enfermedad de Alzheimer/metabolismo , Encéfalo/metabolismo , Humanos , Cuerpos de Lewy/química , Cuerpos de Lewy/metabolismo , Cuerpos de Lewy/patología , Ovillos Neurofibrilares/química , Ovillos Neurofibrilares/metabolismo , Ovillos Neurofibrilares/patología , Enfermedad de Parkinson/metabolismo , Placa Amiloide/química , Placa Amiloide/metabolismo , Placa Amiloide/patología , Agregado de Proteínas , Agregación Patológica de Proteínas/patología , Conformación Proteica en Lámina beta , Proteína Desglicasa DJ-1/química
9.
Commun Biol ; 2: 395, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31701024

RESUMEN

DJ-1 is a deglycase enzyme which exhibits a redox-sensitive chaperone-like activity. The partially oxidized state of DJ-1 is active in inhibiting the aggregation of α-synuclein, a key protein associated with Parkinson's disease. The underlying molecular mechanism behind α-synuclein aggregation inhibition remains unknown. Here we report that the partially oxidized DJ-1 possesses an adhesive surface which sequesters α-synuclein monomers and blocks the early stages of α-synuclein aggregation and also restricts the elongation of α-synuclein fibrils. DJ-1 remodels mature α-synuclein fibrils into heterogeneous toxic oligomeric species. The remodeled fibers show loose surface topology due to a decrease in elastic modulus and disrupt membrane architecture, internalize easily and induce aberrant nitric oxide release. Our results provide a mechanism by which partially oxidized DJ-1 counteracts α-synuclein aggregation at initial stages of aggregation and provide evidence of a deleterious effect of remodeled α-synuclein species generated by partially oxidized DJ-1.


Asunto(s)
Proteína Desglicasa DJ-1/metabolismo , alfa-Sinucleína/metabolismo , Adhesividad , Amiloide/química , Amiloide/metabolismo , Línea Celular , Módulo de Elasticidad , Humanos , Técnicas In Vitro , Microscopía de Fuerza Atómica , Modelos Moleculares , Chaperonas Moleculares/química , Chaperonas Moleculares/metabolismo , Neurotoxinas/química , Neurotoxinas/metabolismo , Oxidación-Reducción , Enfermedad de Parkinson/etiología , Enfermedad de Parkinson/metabolismo , Agregado de Proteínas , Proteína Desglicasa DJ-1/química , alfa-Sinucleína/química
10.
Neoplasia ; 21(9): 893-907, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31401411

RESUMEN

Telomere signaling and metabolic dysfunction are hallmarks of cell aging. New agents targeting these processes might provide therapeutic opportunities, including chemoprevention strategies against cancer predisposition. We report identification and characterization of a pyrazolopyrimidine compound series identified from screens focused on cell immortality and whose targets are glycolytic kinase PGK1 and oxidative stress sensor DJ1. We performed structure-activity studies on the series to develop a photoaffinity probe to deconvolute the cellular targets. In vitro binding and structural analyses confirmed these targets, suggesting that PGK1/DJ1 interact, which we confirmed by immunoprecipitation. Glucose homeostasis and oxidative stress are linked to telomere signaling and exemplar compound CRT0063465 blocked hypoglycemic telomere shortening. Intriguingly, PGK1 and DJ1 bind to TRF2 and telomeric DNA. Compound treatment modulates these interactions and also affects Shelterin complex composition, while conferring cellular protection from cytotoxicity due to bleomycin and desferroxamine. These results demonstrate therapeutic potential of the compound series.


Asunto(s)
Complejos Multiproteicos/metabolismo , Fosfoglicerato Quinasa/metabolismo , Proteína Desglicasa DJ-1/metabolismo , Pirazoles/farmacología , Pirimidinas/farmacología , Estrés Fisiológico , Homeostasis del Telómero/efectos de los fármacos , Proteínas de Unión a Telómeros/metabolismo , Línea Celular Tumoral , Humanos , Ligandos , Modelos Moleculares , Estructura Molecular , Complejos Multiproteicos/química , Fosfoglicerato Quinasa/química , Unión Proteica , Proteína Desglicasa DJ-1/química , Pirazoles/síntesis química , Pirazoles/química , Pirimidinas/síntesis química , Pirimidinas/química , Complejo Shelterina , Relación Estructura-Actividad , Telómero/genética , Telómero/metabolismo , Acortamiento del Telómero/efectos de los fármacos , Acortamiento del Telómero/genética , Proteínas de Unión a Telómeros/química
11.
Biomol NMR Assign ; 13(2): 371-376, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31377986

RESUMEN

DJ-1 is a highly conserved soluble protein that is associated to several cellular pathways. In humans, DJ-1 has been implicated in several pathologies such as cancer, Parkinson's disease and amyotrophic lateral sclerosis. Several roles have been attributed to DJ-1, including defense against oxidative stress, chaperone activity and proteasome regulation. The recent finding that DJ-1 acts as a protein and DNA deglycase further confirms the protective function of DJ-1 and suggests a common mechanism of action in the various pathways in which DJ-1 is involved. Cysteine 106, located in the putative active site of DJ-1, is critical for the biological activity of DJ-1 and is easily oxidized to cysteine-sulfinate. While such oxidation modulates DJ-1 activity, the underlying molecular mechanism has not yet been elucidated. Cysteine oxidation does not perturb the protein structure, therefore changes in protein dynamics in solution could modulate its function. Here, we report a revised and completed (98%) backbone assignment of reduced DJ-1, together with the backbone assignment of oxidized DJ-1. Chemical shift perturbation is observed in several regions across the sequence, while no changes in secondary structure are observed. These data will provide the starting point for further characterization of the changes in the backbone dynamics of DJ-1 upon oxidation in solution at physiological temperature.


Asunto(s)
Cisteína/análogos & derivados , Resonancia Magnética Nuclear Biomolecular , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/metabolismo , Cisteína/metabolismo , Humanos , Oxidación-Reducción
12.
J Chem Inf Model ; 59(4): 1497-1507, 2019 04 22.
Artículo en Inglés | MEDLINE | ID: mdl-30789733

RESUMEN

Patients suffering from familial Parkinson's disease are linked to mutated DJ-1 protein. Wild-type DJ-1 occurs as a homodimer, which appears to be crucial for its function. It has been established that mutation (L166P) in DJ-1 protein could destabilize the DJ-1 homodimer. Hence, dimerization aspect of DJ-1 is fundamentally important for understanding its link to the disease. X-ray structures of wild-type DJ-1 dimer have given an atomic insight into the interaction network at the dimer interface. However, the energetics of dimerization in the wild-type and its mutant protein is unknown. Using the X-ray structure of wild-type DJ-1 as the template, we report ∼1.55 µs of molecular dynamics simulations to quantitatively estimate the relative free energy of DJ-1 dimerization in the disease linked variant (L166P, A104T, and M26I) with respect to its wild-type analogue. The results suggest that dimerization is disfavored for L166P and A104T mutations, severely for the former. Notably, the M26I mutation does not alter the energetics of DJ-1 dimerization. The dynamics of the DJ-1 dimer is significantly altered in response to the L166P and A104T mutations, resulting in the significant loss of interactions at the dimer interface. L166P mutant showed the structural difference and increased flexibility in α6, α7, α8 regions with respect to the WT. A structural difference in the α6 region was noticeable between WT and A104T mutant of DJ-1. The interaction network in the dimer interface is identical for the wild-type protein and the M26I mutant. No significant change in secondary structural content was observed for DJ-1 mutants (L166P, A104T, M26I) with respect to its WT analogue.


Asunto(s)
Mutación , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/genética , Multimerización de Proteína , Modelos Moleculares , Estructura Cuaternaria de Proteína , Termodinámica
13.
ACS Chem Biol ; 13(9): 2783-2793, 2018 09 21.
Artículo en Inglés | MEDLINE | ID: mdl-30063823

RESUMEN

DJ-1 is a Parkinson's disease associated protein endowed with enzymatic, redox sensing, regulatory, chaperoning, and neuroprotective activities. Although DJ-1 has been vigorously studied for the past decade and a half, its exact role in the progression of the disease remains uncertain. In addition, little is known about the spatiotemporal regulation of DJ-1, or the biochemical basis explaining its numerous biological functions. Progress has been hampered by the lack of inhibitors with precisely known mechanisms of action. Herein, we have employed biophysical methodologies and X-ray crystallography to identify and to optimize a family of compounds inactivating the critical Cys106 residue of human DJ-1. We demonstrate these compounds are potent inhibitors of various activities of DJ-1 in vitro and in cell-based assays. This study reports a new family of DJ-1 inhibitors with a defined mechanism of action, and contributes toward the understanding of the biological function of DJ-1.


Asunto(s)
Enfermedad de Parkinson/tratamiento farmacológico , Proteína Desglicasa DJ-1/antagonistas & inhibidores , Bibliotecas de Moléculas Pequeñas/química , Bibliotecas de Moléculas Pequeñas/farmacología , Cristalografía por Rayos X , Cisteína/química , Cisteína/metabolismo , Descubrimiento de Drogas , Células HEK293 , Células HeLa , Humanos , Simulación del Acoplamiento Molecular , Conformación Proteica/efectos de los fármacos , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/metabolismo
14.
ACS Chem Biol ; 13(8): 2016-2019, 2018 08 17.
Artículo en Inglés | MEDLINE | ID: mdl-30011180

RESUMEN

Reactive oxygen species (ROS) play an important role in the onset of Parkinson's disease (PD), and deciphering protective mechanisms is a major goal for therapeutic development. Here, DJ-1 (PARK7) gained major attention when a conserved cysteine residue with a putative role in oxidative stress sensing/protection was linked to PD. Inspired by previous studies with a bacterial homologue of DJ-1, several amino-epoxycylcohexenones were screened for enzyme inhibition, and a chemical probe with specificity for the human ortholog was selected for cellular studies. The probe selectively labeled the cysteine oxidation sensor and whole proteome analysis in HeLa, A549, and SHSY5Y cell lines confirmed strong enrichment of reduced DJ-1 as the most prominent target. Increasing levels of oxidative stress diminished this signal demonstrating the utility of our tool compound for selective in situ monitoring of this important biomarker in its reduced state.


Asunto(s)
Esterasas/metabolismo , Sondas Moleculares/química , Proteína Desglicasa DJ-1/metabolismo , Alquinos/química , Línea Celular Tumoral , Ciclohexanonas/química , Cisteína/química , Esterasas/química , Humanos , Oxidación-Reducción , Proteína Desglicasa DJ-1/química , Proteómica
15.
Acc Chem Res ; 51(6): 1550-1557, 2018 06 19.
Artículo en Inglés | MEDLINE | ID: mdl-29869502

RESUMEN

Cellular structural biology methods are needed to characterize biological processes at atomic resolution in the physiological environment of the cell. Toward this goal, solution in-cell NMR is a powerful approach because it provides structural and dynamic data on macromolecules inside living cells. Several approaches have been developed for in-cell NMR in cultured human cells, which are needed to study processes related to human diseases that rely on the delivery of exogenous macromolecules to the cells. Such strategies, however, may not be applicable to proteins that are sensitive to the external environment or prone to aggregate and can introduce artifacts during protein purification or delivery. As a complementary approach, direct protein expression for in-cell NMR in human cells was developed. This strategy is especially useful when studying processes like protein folding, maturation, and post-translational modification, starting right after protein synthesis. Compared with the protein expression techniques in mammalian cells commonly used in cellular biology, the low sensitivity of NMR requires higher protein levels. Among the cell lines used for high-yield protein expression, the HEK293T cell line was chosen, as it can be efficiently transfected with a cost-effective reagent. A vector originally designed for secreted proteins allows high-level cytosolic protein expression. For isotopic labeling, commercially available or homemade labeled media are employed. Uniform or amino acid type-selective labeling strategies are possible. Protein expression can be targeted to specific organelles (e.g., mitochondria), allowing for in organello NMR applications. A variant of the approach was developed that allows the sequential expression of two or more proteins, with only one selectively labeled. Protein expression in HEK293T cells was applied to recapitulate the maturation steps of intracellular superoxide dismutase 1 (SOD1) and to study the effect of mutations linked to familial amyotrophic lateral sclerosis (fALS) by in-cell NMR. Intracellular wild-type SOD1 spontaneously binds zinc, while it needs the copper chaperone for superoxide dismutase (CCS) for copper delivery and disulfide bond formation. Some fALS-linked mutations impair zinc binding and cause SOD1 to irreversibly unfold, likely forming the precursor of cytotoxic aggregates. The SOD-like domain of CCS acts as a molecular chaperone toward mutant SOD1, stabilizing its folding and allowing zinc binding and correct maturation. Changes in protein redox state distributions can also be investigated by in-cell NMR. Mitochondrial proteins require the redox-regulating partners glutaredoxin 1 (Grx1) and thioredoxin (Trx) to remain in the reduced, import-competent state in the cytosol, whereas SOD1 requires CCS for disulfide bond formation. In both cases, the proteins do not equilibrate with the cytosolic redox pool. Cysteine oxidation in response to oxidative stress can also be monitored. In the near future, in-cell NMR in human cells will likely benefit from technological advancements in NMR hardware, the development of bioreactor systems for increased sample lifetime, the application of paramagnetic NMR to obtain structural restraints, and advanced tools for genome engineering and should be increasingly integrated with advanced cellular imaging techniques.


Asunto(s)
Espectroscopía de Resonancia Magnética/métodos , Superóxido Dismutasa-1/metabolismo , Esclerosis Amiotrófica Lateral/genética , Proteínas Portadoras/metabolismo , Cobre/metabolismo , Proteínas Transportadoras de Cobre , Escherichia coli/metabolismo , Células HEK293 , Humanos , Marcaje Isotópico , Proteínas de Transporte de Membrana Mitocondrial/metabolismo , Proteínas del Complejo de Importación de Proteínas Precursoras Mitocondriales , Chaperonas Moleculares/metabolismo , Mutación , Isótopos de Nitrógeno , Conformación Proteica , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/metabolismo , Pliegue de Proteína , Superóxido Dismutasa-1/química , Superóxido Dismutasa-1/genética , Zinc/metabolismo
16.
Mol Biochem Parasitol ; 222: 70-80, 2018 06.
Artículo en Inglés | MEDLINE | ID: mdl-29753659

RESUMEN

Plasmodium falciparum DJ1 (PfDJ1) belongs to the DJ-1/ThiJ/PfpI superfamily whose members are present in all the kingdoms of life and exhibit diverse cellular functions and biochemical activities. The common feature of the superfamily is the class I glutamine amidotransferase domain with a conserved redox-active cysteine residue, which mediates various activities of the superfamily members, including anti-oxidative activity in PfDJ1 and human DJ1 (hDJ1). As the superfamily members represent diverse functional classes, to investigate if there is any sequence feature unique to hDJ1-like proteins, sequences of the representative proteins of different functional classes were compared and analysed. A novel motif unique to PfDJ1 and several other hDJ1-like proteins, with the consensus sequence of TSXGPX5FXLX5L, was identified that we designated as the hDJ1-subfamily motif (DJSM). Several mutations that have been associated with Parkinson's disease are also present in DJSM, suggesting its functional importance in hDJ1-like proteins. Mutations of the conserved residues of DJSM of PfDJ1 did not significantly affect overall secondary structure, but caused both a significant loss (S151A and P154A) and gain (L168A) of anti-oxidative activity. We also report that PfDJ1 has deglycase activity, which was significantly decreased in its mutants of the catalytic cysteine (C106A) and DJSM (S151A and P154A). Episomal expression of the catalytic cysteine (C106A) or DJSM (P154A) mutant decreased growth rates of parasites as compared to that of wild type parasites or parasites expressing wild type PfDJ1. S151 appears to properly position the nucleophilic elbow containing C106 and P154 forms a hydrogen bond with C106, which could be a reason for the loss of activities of PfDJ1 upon their mutations. Taken together, DJSM delineates PfDJ1 and other hDJ1-subfamily proteins from the remaining superfamily, and is critical for anti-oxidative and deglycase activities of PfDJ1.


Asunto(s)
Estrés Oxidativo , Plasmodium falciparum/enzimología , Plasmodium falciparum/metabolismo , Proteína Desglicasa DJ-1/química , Proteína Desglicasa DJ-1/metabolismo , Proteínas Protozoarias/química , Proteínas Protozoarias/metabolismo , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Catálisis , Secuencia Conservada , Humanos , Plasmodium falciparum/química , Plasmodium falciparum/genética , Proteína Desglicasa DJ-1/genética , Proteínas Protozoarias/genética , Alineación de Secuencia
17.
Biomark Med ; 12(5): 419-425, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29697269

RESUMEN

AIM: Biomarkers are molecules measured in plasma, serum or other body fluids to characterize a disease. PARK7 and NDKA roles in the management of stroke are still on study. Therefore, their potentials need to be developed in totality. The aim of this review is to demonstrate that PARK7 and NDKA could present more clinical important information as biomarkers for management of stroke disease. Main contents: Four main aspects of PARK7 and NDKA are exploited in this review. First, their diagnostic value is discussed in order to demonstrate their possible role as stroke diagnosis markers. Second, this article will exploit the correlation of both markers with time, by showing their dynamic changes in serum and plasma. Third, it describes the observed relationship of their levels with NIH Stroke Scale. The last aspect visits the possibility of their implementation in stroke therapy. CONCLUSION: This article explores recent findings and proposes the potential roles that PARK7 and NDKA play in the management of acute stroke disease.


Asunto(s)
Nucleósido Difosfato Quinasas NM23/metabolismo , Proteína Desglicasa DJ-1/metabolismo , Accidente Cerebrovascular/metabolismo , Biomarcadores/sangre , Biomarcadores/química , Biomarcadores/metabolismo , Humanos , Nucleósido Difosfato Quinasas NM23/sangre , Nucleósido Difosfato Quinasas NM23/líquido cefalorraquídeo , Nucleósido Difosfato Quinasas NM23/química , Proteína Desglicasa DJ-1/sangre , Proteína Desglicasa DJ-1/líquido cefalorraquídeo , Proteína Desglicasa DJ-1/química , Accidente Cerebrovascular/sangre , Accidente Cerebrovascular/líquido cefalorraquídeo , Accidente Cerebrovascular/diagnóstico
18.
Int J Biol Macromol ; 107(Pt B): 1650-1658, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29030185

RESUMEN

The DJ-1 protein engages in diverse cellular and pathological processes, including tumorigenesis, apoptosis, sperm fertilization, and the progression of Parkinson's disease (PD). The functional dimeric form of DJ-1 transforms into non-functional filamentous aggregates in an inorganic phosphate (Pi)-dependent manner in vitro. Here, we demonstrated that Pi and reactive oxygen species (ROS) induce DJ-1 aggregation in Neuro2A and SH-SY5Y cells. Remarkably, tartrate treatment significantly reduced Pi- and ROS-induced DJ-1 aggregation and restored Pi- and ROS-provoked cell death using quantitative data as mean±standard deviation, and statistics. Mechanistically, tartrate prevented DJ-1 aggregation via occupying the Pi-binding site. These findings revealed an unexpected physiological role of tartrate in the maintenance of DJ-1 function, and thus, a potential use as an inhibitor of DJ-1 aggregation.


Asunto(s)
Fosfatos/toxicidad , Agregado de Proteínas/efectos de los fármacos , Proteína Desglicasa DJ-1/química , Tartratos/farmacología , Animales , Muerte Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Cristalografía por Rayos X , Humanos , Peróxido de Hidrógeno/farmacología , Cuerpos de Inclusión/metabolismo , Ratones , Modelos Moleculares , Neuronas/citología , Estrés Oxidativo/efectos de los fármacos , Tartratos/química
19.
Biochem Biophys Res Commun ; 495(1): 1067-1073, 2018 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-29175327

RESUMEN

DJ-1 is a multifunctional protein associated with Parkinson's disease (PD) and tumorigenesis. In response to ultraviolet B (UVB) irradiation, DJ-1 is translocated into the mitochondria, and its interaction with the mitochondrial protein Bcl-XL protects cells against death. In this study, we characterized the molecular interaction between DJ-1 and Bcl-XL by NMR spectroscopy. The NMR chemical shift perturbation data demonstrated that the oxidized but not the reduced form of DJ-1 binds to the predominantly hydrophobic groove surrounded by the BH1-BH3 domains in Bcl-XL. In addition, our results showed that the C-terminal α8-helix peptide (Cpep) of DJ-1 binds to the pro-apoptotic BH3 peptide-binding hydrophobic groove in Bcl-XL and, thus, acts as a Bcl-XL-binding motif. In combination with the NMR chemical shift perturbation data, a refined structural model of the Bcl-XL/DJ-1 Cpep complex revealed that the binding mode is remarkably similar to that of other Bcl-XL/pro-apoptotic BH3 peptide complexes. Taken together, our results provide a structural basis for the binding mechanism between DJ-1 and Bcl-XL, which will contribute to molecular understanding of the role of mitochondrial DJ-1 in Bcl-XL regulation in response to oxidative stress.


Asunto(s)
Simulación del Acoplamiento Molecular/métodos , Proteína Desglicasa DJ-1/química , Mapeo de Interacción de Proteínas/métodos , Proteína bcl-X/química , Proteína bcl-X/ultraestructura , Sitios de Unión , Interacciones Hidrofóbicas e Hidrofílicas , Espectroscopía de Resonancia Magnética/métodos , Modelos Químicos , Unión Proteica , Conformación Proteica , Dominios Proteicos , Relación Estructura-Actividad
20.
J Biol Inorg Chem ; 23(1): 61-69, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29218631

RESUMEN

DJ-1 is a conserved, ubiquitous protein associated to a large number of intracellular processes. Human DJ-1 has been linked to several pathologies, including hereditary forms of Parkinson's disease, cancer, and amyotrophic lateral sclerosis. Several cytoprotective functions of DJ-1 have been reported, however, its actual mechanisms of action remain elusive. In vitro, DJ-1 has been shown to bind zinc and copper(II) at its active site, which contains a conserved cysteine (C106), and copper(I) at a different binding site. C106 is essential to DJ-1 function, and is easily oxidized upon oxidative stress. Here, we investigated the metal-binding- and redox properties of DJ-1 in living human cells by in-cell NMR. Intracellular DJ-1 is surprisingly free from interactions with any other cellular components and as such is clearly detectable by NMR. Metal-bound forms of DJ-1 were not observed upon treating the cells with excess zinc or copper. No copper binding was observed when co-expressing DJ-1 with the copper chaperone for superoxide dismutase 1 (SOD1). Co-expression of DJ-1 with SOD1 itself did not promote copper binding to SOD1, excluding a previously suggested function of DJ-1 as a copper chaperone. Overall, our data do not support the role of DJ-1 as a metalloprotein. Conversely, oxidative treatment to the cells caused the complete and selective oxidation of C106 to sulfinic acid, consistent with the reported role of DJ-1 as a redox sensor.


Asunto(s)
Calcio/química , Proteína Desglicasa DJ-1/química , Zinc/química , Dominio Catalítico , Cisteína/química , Células HEK293 , Humanos , Oxidación-Reducción , Superóxido Dismutasa-1/química
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