RESUMEN
Rhodobacter sp. BT18, a phototrophic salt-resistant bacterium, was isolated from brackish water and screened for the production of exopolysaccharides (EPS). The effect of different light sources on the growth of Rhodobacter sp. BT18 was investigated. The effect on the growth order was found to be blue > white > green > red > yellow > dark. Based on Box-Behnken design, the studied variables (pHâ¯7.0, 35⯰C, and 30% of sucrose concentration under 60â¯h of incubation with blue light illumination) were found to be ideal for the maximum production of EPS (582.5â¯mg/L). Scanning electron microscopy images revealed the porous nature of EPS. Fourier transform spectroscopy and X-ray diffraction were applied to study the functional groups and the crystalline nature of the EPS, respectively. The emulsification index of the EPS was >75% and the maximum flocculating activity was about 75.4% at 30â¯mg/L concentration of EPS. In addition, EPS showed effective arsenic (64%) and lead (51%) chelating activities in liquid solutions. The multiple environmental applications of the EPS produced by Rhodobacter sp. BT18 make it be a promising alternative for emulsification, flocculation and metal removal in various industries.
Asunto(s)
Luz , Polisacáridos Bacterianos/biosíntesis , Rhodobacter/química , Rhodobacter/fisiología , Aguas Salinas , Microbiología del Agua , Quelantes/química , Quelantes/farmacología , Emulsiones , Concentración de Iones de Hidrógeno , Filogenia , Polisacáridos Bacterianos/química , Polisacáridos Bacterianos/farmacología , ARN Ribosómico 16S/genética , Rhodobacter/aislamiento & purificación , Rhodobacter/efectos de la radiación , Espectroscopía Infrarroja por Transformada de Fourier , TemperaturaRESUMEN
The Salar de Huasco is an evaporitic basin located in the Chilean Altiplano, which presents extreme environmental conditions for life, i.e. high altitude (3800 m.a.s.l.), negative water balance, a wide salinity range, high daily temperature changes and the occurrence of the highest registered solar radiation on the planet (> 1200 W m-2). This ecosystem is considered as a natural laboratory to understand different adaptations of microorganisms to extreme conditions. Rhodobacter, an anoxygenic aerobic phototrophic bacterial genus, represents one of the most abundant groups reported based on taxonomic diversity surveys in this ecosystem. The bacterial mat isolate Rhodobacter sp. strain Rb3 was used to study adaptation mechanisms to stress-inducing factors potentially explaining its success in a polyextreme ecosystem. We found that the Rhodobacter sp. Rb3 genome was characterized by a high abundance of genes involved in stress tolerance and adaptation strategies, among which DNA repair and oxidative stress were the most conspicuous. Moreover, many other molecular mechanisms associated with oxidative stress, photooxidation and antioxidants; DNA repair and protection; motility, chemotaxis and biofilm synthesis; osmotic stress, metal, metalloid and toxic anions resistance; antimicrobial resistance and multidrug pumps; sporulation; cold shock and heat shock stress; mobile genetic elements and toxin-antitoxin system were detected and identified as potential survival mechanism features in Rhodobacter sp. Rb3. In total, these results reveal a wide set of strategies used by the isolate to adapt and thrive under environmental stress conditions as a model of polyextreme environmental resistome.
Asunto(s)
Adaptación Fisiológica/genética , Ecosistema , Ambientes Extremos , Rhodobacter/fisiología , Microbiología del Agua , Altitud , Chile , Biología Computacional , ADN Bacteriano/genética , Genes Bacterianos , Modelos Biológicos , ARN Ribosómico 16S/genética , ARN de Transferencia/genética , Rhodobacter/genética , Rhodobacter/metabolismo , Especificidad de la EspecieRESUMEN
Antibiotics are typically regarded as microbial weapons, but whereas their function at concentrations lethal for bacteria is often well characterized, the role of antibiotics at much lower concentrations as possibly found under natural conditions remains poorly understood. By using whole-transcriptome analyses and phenotypic screenings of the marine bacterium Phaeobacter inhibens we found that the broad-spectrum antibiotic tropodithietic acid (TDA) causes the same regulatory effects in quorum sensing (QS) as the common signaling molecule N-acyl-homoserine lactone (AHL) at concentrations 100-fold lower than the minimal inhibitory concentration against bacteria. Our results show that TDA has a significant impact on the expression of ~10% of the total genes of P. inhibens, in the same manner as the AHL. Furthermore, TDA needs the AHL associated LuxR-type transcriptional regulator, just as the AHL molecule. Low concentrations of antibiotics can obviously have a strong influence on the global gene expression of the bacterium that produces it and drastically change the metabolism and behaviour of the bacterium. For P. inhibens this includes motility, biofilm formation and antibiotic production, all important for settlement on new host-associated surfaces. Our results demonstrate that bacteria can produce antibiotics not only to antagonise other bacteria, but also to mediate QS like endogenous AHL molecules.
Asunto(s)
Antibacterianos/farmacología , Regulación Bacteriana de la Expresión Génica , Probióticos , Rhodobacter/fisiología , Transducción de Señal/efectos de los fármacos , Tropolona/análogos & derivados , Biología Computacional/métodos , Perfilación de la Expresión Génica , Modelos Biológicos , Mutación , Percepción de Quorum/efectos de los fármacos , Transcriptoma , Tropolona/metabolismo , Tropolona/farmacologíaRESUMEN
Photosystem formation in anaerobic anoxygenic phototrophic bacteria (APB) is repressed by oxygen but is de-repressed when oxygen tension decreases. Under semiaerobic conditions, the synthesis of photopigments and pigment protein complexes in Rhodobacter (Rba.) sphaeroides are repressed by light. AppA, a blue-light receptor, mediates this regulation. In the present study, it was showed that the synthesis of bacteriochlorophyll, carotenoid, and pigment protein complexes in Rba. azotoformans 134K20 was significantly repressed by oxygen. Oxygen exposure also led to a conversion of spheroidene to spheroidenone. In semiaerobically growing cells, light irradiation resulted in a decrease in the formation of photosystem, and blue light was found to be the most effective light source. Blue light reduced the contents of bacteriochlorophyll and carotenoid slightly, but had negligible effects on light harvesting complex (LH) 1 content, whereas the content of LH2 was significantly decreased indicating that blue light selectively repressed the synthesis of LH2 in semiaerobically growing 134K20. It was concluded that, similar to Rba. sphaeroides, a blue light receptor presented in strain 134K20 played important roles in its light-dependent repression. A possible mechanism involved in controlling the differential inhibitory of blue light on the synthesis of photosystem was discussed.
Asunto(s)
Complejos de Proteína Captadores de Luz/fisiología , Rhodobacter/fisiología , Bacterioclorofilas/biosíntesis , Carotenoides/biosíntesis , Carotenoides/química , Carotenoides/metabolismo , Luz , Complejos de Proteína Captadores de Luz/efectos de la radiación , Rhodobacter/efectos de la radiación , Rhodobacter sphaeroides/química , Rhodobacter sphaeroides/fisiologíaRESUMEN
In this paper, we reported for the first time that Rhodobacter azotoformans was capable of synthesizing a spectral variant of peripheral light-harvesting complex (LH3), besides a high light form (LH2), in response to low light intensity. Carotenoid components in these complexes were analyzed by absorption spectra, high-pressure liquid chromatography and mass spectroscopy analysis. Only spheroidene carotenoid was detected in LH2, while LH3 possessed three kinds of carotenoids, spheroidene, spirilloxanthin, and anhydrorhodovibrin. The spirilloxanthin and anhydrorhodovibrin predominated in LH3 and were rarely found in Rhodobacter species. Carotenoid-to-bacteriochlorophyll energy transfer efficiency in LH3 increased by 4% compared to that in LH2. Raman spectroscopic properties of carotenoids in both complexes supported the view that carotenoids altered their planar configuration to a distorted form by interaction with protein matrix in response to low light conditions. In conclusion, the low light adaptation mechanism of Rba. azotoformans involved regulating the synthesis of LH3 and additional carotenoids as well as the configuration change of incorporated carotenoids.
Asunto(s)
Rhodobacter/fisiología , Adaptación Ocular , Proteínas Bacterianas/metabolismo , Carotenoides/metabolismo , Transferencia de Energía , Luz , Complejos de Proteína Captadores de Luz/metabolismoRESUMEN
Deterioration of water wells due to clogging and corrosion over time is a common problem where solutions may be costly and ineffective. Pilot studies have suggested that impressed current or cathodic protection may be used to reduce microbially-induced declines in water well performance. Two water wells in an alluvial aquifer close to the North Saskatchewan River were selected to study the response of subsurface microbial communities to the application of an impressed current as an anti-fouling technology. The treated well was exposed to an impressed current while the untreated well was used as a reference site. Biofilms grown on in situ coupons under the influence of the impressed current were significantly (p < 0.05) thicker (mean thickness = 67.3 µm) when compared to the biofilms (mean thickness = 19.3 µm) grown outside the electric field. Quantitative PCR analyses showed significantly (p < 0.05) higher numbers of total bacteria, iron- and nitrate-reducers in the electrified zone. Molecular analysis revealed that the predominant bacteria present in biofilms grown under the influence of the impressed current belonged to Rhodobacter spp., Sediminibacterium spp. and Geobacter spp. In addition to favouring the growth of biofilms, direct microscopic and ICP-AES analyses revealed that the impressed current also caused the deposition of iron and manganese on, and in the vicinity of, the well screen. Together, these factors contributed to rapid clogging leading to reduced specific pumping capacities of the treated well. The study revealed that the impressed current system was not effective as an anti-fouling technology but actually promoted both microbial growth and physical clogging in this aquifer.
Asunto(s)
Incrustaciones Biológicas , Estimulación Eléctrica/métodos , Bacterias Gramnegativas/crecimiento & desarrollo , Bacterias Grampositivas/crecimiento & desarrollo , Calidad del Agua , Pozos de Agua/microbiología , Biopelículas/crecimiento & desarrollo , Incrustaciones Biológicas/prevención & control , Precipitación Química , Recuento de Colonia Microbiana , Estimulación Eléctrica/efectos adversos , Geobacter/clasificación , Geobacter/crecimiento & desarrollo , Geobacter/aislamiento & purificación , Geobacter/fisiología , Bacterias Gramnegativas/clasificación , Bacterias Gramnegativas/aislamiento & purificación , Bacterias Gramnegativas/fisiología , Bacterias Grampositivas/clasificación , Bacterias Grampositivas/aislamiento & purificación , Bacterias Grampositivas/fisiología , Procesos Heterotróficos , Hierro/química , Manganeso/química , Viabilidad Microbiana , Tipificación Molecular , Rhodobacter/clasificación , Rhodobacter/crecimiento & desarrollo , Rhodobacter/aislamiento & purificación , Rhodobacter/fisiología , Saskatchewan , Sphingobacterium/clasificación , Sphingobacterium/crecimiento & desarrollo , Sphingobacterium/aislamiento & purificación , Sphingobacterium/fisiología , Factores de TiempoRESUMEN
The motion of small bacteria consists of two phases: relatively long runs alternate with intermittent stops, back-ups, or tumbles, depending on the species. In polar monotrichous bacteria, the flagellum is anchored at the cell pole inherited from the parent generation (old pole) and is surrounded by a chemoreceptor cluster. During forward swimming, the leading pole is always the pole recently formed in cell division (new pole). The flagella of the peritrichous bacterium Escherichia coli often form a bundle behind the old pole. Its cell orientation and receptor positioning during runs generally mimic that of monotrichous bacteria. When encountering a solid surface, peritrichous bacteria exhibit a circular motion with the leading pole dipping downward. Some polar monotrichous bacteria also perform circular motion near solid boundaries, but during back-ups. In this case, the leading pole points upward. Very little is known about behavior near milieu-air interfaces. Biophysical simulations have revealed some of the mechanisms underlying these phenomena, but leave many questions unanswered. Combining biophysics with molecular techniques will certainly advance our understanding of bacterial locomotion.
Asunto(s)
Bacterias/metabolismo , Fenómenos Fisiológicos Bacterianos , Microbiología del Agua , Biofisica/métodos , Caulobacter/fisiología , Simulación por Computador , Escherichia coli/metabolismo , Flagelos/metabolismo , Hidrodinámica , Modelos Biológicos , Movimiento , Probabilidad , Rhodobacter/fisiologíaRESUMEN
In well-characterised species of the Rhodobacter (Rba.) genus of purple photosynthetic bacteria it is known that the photochemical reaction centre (RC) is intimately-associated with an encircling LH1 antenna pigment protein, and this LH1 antenna is prevented from completely surrounding the RC by a single copy of the PufX protein. In Rba. veldkampii only monomeric RC-LH1 complexes are assembled in the photosynthetic membrane, whereas in Rba. sphaeroides and Rba. blasticus a dimeric form is also assembled in which two RCs are surrounded by an S-shaped LH1 antenna. The present work established that dimeric RC-LH1 complexes can also be isolated from Rba. azotoformans and Rba. changlensis, but not from Rba. capsulatus or Rba. vinaykumarii. The compositions of the monomers and dimers isolated from these four species of Rhodobacter were similar to those of the well-characterised RC-LH1 complexes present in Rba. sphaeroides. Pigment proteins were also isolated from strains of Rba. sphaeroides expressing chimeric RC-LH1 complexes. Replacement of either the Rba. sphaeroides LH1 antenna or PufX with its counterpart from Rba. capsulatus led to a loss of the dimeric form of the RC-LH1 complex, but the monomeric form had a largely unaltered composition, even in strains in which the expression level of LH1 relative to the RC was reduced. The chimeric RC-LH1 complexes were also functional, supporting bacterial growth under photosynthetic conditions. The findings help to tease apart the different functions of PufX in different species of Rhodobacter, and a specific protein structural arrangement that allows PufX to fulfil these three functions is proposed.
Asunto(s)
Proteínas Bacterianas/fisiología , Complejos de Proteína Captadores de Luz/fisiología , Proteínas del Complejo del Centro de Reacción Fotosintética/metabolismo , Proteínas del Complejo del Centro de Reacción Fotosintética/fisiología , Rhodobacter/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Regulación Bacteriana de la Expresión Génica , Complejos de Proteína Captadores de Luz/química , Complejos de Proteína Captadores de Luz/genética , Complejos de Proteína Captadores de Luz/metabolismo , Modelos Moleculares , Organismos Modificados Genéticamente , Péptidos/química , Péptidos/metabolismo , Fotosíntesis/genética , Fotosíntesis/fisiología , Proteínas del Complejo del Centro de Reacción Fotosintética/análisis , Proteínas del Complejo del Centro de Reacción Fotosintética/química , Dominios y Motivos de Interacción de Proteínas , Multimerización de Proteína/genética , Multimerización de Proteína/fisiología , Estructura Cuaternaria de Proteína , Rhodobacter/genética , Rhodobacter/fisiología , Rhodobacter capsulatus/genética , Rhodobacter capsulatus/metabolismo , Rhodobacter capsulatus/fisiología , Rhodobacter sphaeroides/genética , Rhodobacter sphaeroides/metabolismo , Rhodobacter sphaeroides/fisiología , Especificidad de la EspecieRESUMEN
An ovoid to rod-shaped, phototrophic, purple non-sulfur bacterium was isolated from a brown-coloured microbial mat from the brackish water of Bhitarkanika mangrove forest, Dangmal, Orissa, India. Cells of strain JA296(T) were Gram-negative and motile, forming chains of four to eight cells. The colour of the cell suspension grown under anaerobic conditions in the light was yellowish green. Bacteriochlorophyll a and the carotenoids spheroidene and spheroidenone of the spirilloxanthin series were present as photosynthetic pigments. The bacterium was a facultative anaerobe and was able to grow photo-organoheterotrophically and chemo-organoheterotrophically. Thiamine was required as a growth factor. C(18 : 1)omega7c was the dominant fatty acid. Internal cytoplasmic membranes were of the vesicular type. Strain JA296(T) did not require NaCl for growth. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA296(T) was most closely related to Rhodobacter capsulatus ATCC 11166(T) (95.5 % sequence similarity) and clustered with species of the genus Rhodobacter of the family Rhodobacteraceae, class Alphaproteobacteria. On the basis of 16S rRNA gene sequence analysis and morphological and physiological characteristics, strain JA296(T) represents a novel species of the genus Rhodobacter, for which the name Rhodobacter aestuarii sp. nov. is proposed; the type strain is JA296(T) (=JCM 14887(T) =CCUG 55130(T)).
Asunto(s)
Agua Dulce/microbiología , Procesos Fototróficos , Rhodobacter/clasificación , Técnicas de Tipificación Bacteriana , Bacterioclorofila A/metabolismo , Carotenoides/metabolismo , ADN Bacteriano/análisis , Ácidos Grasos/análisis , India , Datos de Secuencia Molecular , Fenotipo , Filogenia , ARN Ribosómico 16S/genética , Rhizophoraceae , Rhodobacter/genética , Rhodobacter/aislamiento & purificación , Rhodobacter/fisiología , Análisis de Secuencia de ADN , Especificidad de la Especie , ÁrbolesRESUMEN
Phototrophic iron(II) [Fe(II)]-oxidizing bacteria are present in modern environments and evidence suggests that this metabolism was present already on early earth. We determined Fe(II) oxidation rates depending on pH, temperature, light intensity, and Fe(II) concentration for three phylogenetically different phototrophic Fe(II)-oxidizing strains (purple nonsulfur bacterium Rhodobacter ferrooxidans sp. strain SW2, purple sulfur bacterium Thiodictyon sp. strain F4, and green sulfur bacterium Chlorobium ferrooxidans strain KoFox). While we found the overall highest Fe(II) oxidation rates with strain F4 (4.5 mmol L(-1) day(-1), 800 lux, 20 degrees C), the lowest light saturation values [at which maximum Fe(II) oxidation occurred] were determined for strain KoFox with light saturation already below 50 lux. The oxidation rate per cell was determined for R. ferrooxidans strain SW2 to be 32 pmol Fe(II) h(-1) per cell. No significant toxic effect of Fe(II) was observed at Fe(II) concentrations of up to 30 mM. All three strains are mesophiles with upper temperature limits of c. 30 degrees C. The main pigments were identified to be spheroidene, spheroidenone, OH-spheroidenone (SW2), rhodopinal (F4), and chlorobactene (KoFox). This study will improve our ecophysiological understanding of iron cycling in modern environments and will help to evaluate whether phototrophic iron oxidizers may have contributed to the formation of Fe(III) on early earth.
Asunto(s)
Chlorobi/fisiología , Chromatiaceae/fisiología , Compuestos Ferrosos/metabolismo , Procesos Fototróficos , Rhodobacter/fisiología , Fenómenos Fisiológicos Bacterianos , Carotenoides/metabolismo , Chlorobi/clasificación , Chlorobi/genética , Chlorobi/ultraestructura , Chromatiaceae/clasificación , Chromatiaceae/genética , Chromatiaceae/ultraestructura , Medios de Cultivo , Concentración de Iones de Hidrógeno , Luz , Microscopía Electrónica de Rastreo , Oxidación-Reducción , Rhodobacter/clasificación , Rhodobacter/genética , Rhodobacter/ultraestructura , TemperaturaRESUMEN
The RegB-RegA regulon from Rhodobacter capsulatus and Rhodobacter sphaeroides encodes proteins involved in numerous energy-generating and energy-utilizing processes such as photosynthesis, carbon fixation, nitrogen fixation, hydrogen utilization, aerobic and anaerobic respiration, denitrification, electron transport and aerotaxis. The redox signal that is detected by the membrane-bound sensor kinase, RegB, has been identified to be the ubiquinone pool in the membrane. Regulation of RegB autophosphorylation also involves a redox-active cysteine that is present in the cytosolic region of RegB. Both phosphorylated and unphosphorylated forms of the cognate response regulator RegA are capable of activating or repressing a variety of genes in the regulon. Highly conserved homologues of RegB and RegA have been found in a wide number of photosynthetic and nonphotosynthetic bacteria with evidence suggesting that RegB/RegA have a fundamental role in the transcription of redox-regulated genes in many bacterial species.
Asunto(s)
Fenómenos Fisiológicos Bacterianos , Proteínas Bacterianas/fisiología , Secuencia de Aminoácidos , Bacterias/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Secuencia de Bases , Sitios de Unión/genética , ADN Bacteriano/genética , ADN Bacteriano/metabolismo , Transporte de Electrón , Modelos Biológicos , Datos de Secuencia Molecular , Fijación del Nitrógeno , Oxidación-Reducción , Fotosíntesis , Proteínas Quinasas/química , Proteínas Quinasas/genética , Proteínas Quinasas/fisiología , Regulón , Rhodobacter/genética , Rhodobacter/fisiología , Transducción de Señal/fisiología , Transactivadores/química , Transactivadores/genética , Transactivadores/fisiologíaRESUMEN
During investigations into the diversity of anoxygenic phototrophic bacteria in marine habitats, an ovoid to rod-shaped purple non-sulfur bacterium, designated strain JA276(T), was isolated from enrichments under photoheterotrophic conditions from a marine sediment sampled from the seashore of Cochin, India. Strain JA276(T) is a Gram-negative, motile, chain-forming bacterium that shows optimum growth under photoheterotrophic conditions and is also able to grow chemoorganotrophically. Thiamine is required as a growth factor. Strain JA276(T) contains vesicular intracytoplasmic membranes, bacteriochlorophyll a and the carotenoids spheroidene and spheroidenone. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain JA276(T) belongs to the genus Rhodobacter and is closely related to the type strain of Rhodobacter capsulatus (96.2 % sequence similarity). On the basis of the results of 16S rRNA gene sequence analysis and morphological and physiological data, strain JA276(T) is significantly different from other species of the genus Rhodobacter and represents a novel species of the genus, for which the name Rhodobacter maris sp. nov. is proposed. The type strain is JA276(T) (=JCM 14794(T) =ATCC BAA-1549(T) =CCUG 55129(T)).
Asunto(s)
Ecosistema , Procesos Fototróficos , Rhodobacter/clasificación , Rhodobacter/aislamiento & purificación , Agua de Mar/microbiología , India , Biología Marina , Datos de Secuencia Molecular , Océanos y Mares , Filogenia , ARN Ribosómico 16S/genética , Rhodobacter/genética , Rhodobacter/fisiología , Especificidad de la EspecieRESUMEN
A novel strain, alga-05, of alkaliphilic purple nonsulfur bacteria was isolated from sediments of a small saline (60 g/l) soda lake near Lake Algin (Barguzin Valley, Buryat Republic, Russia). These bacteria contain bacteriochlorophyll a and carotenoids of the alternative spirilloxanthin group with predominating demethylspheroidenone. They are facultative anaerobes; their photosynthetic structures are of the vesicular type and arranged along the cell periphery. Growth of this strain is possible in a salinity range of 5-80 g/l NaCl, with an optimum at 20 g/l NaCl. Best growth occurred at 20-35 degrees C. Analysis of the 16S rRNA gene sequences demonstrated that the studied isolate is closely related to the alkaliphilic purple nonsulfur bacterium Rhodobaca bogoriensis (99% similarity) isolated from soda lakes of the African Rift Zone. According to the results of DNA-DNA hybridization, strain alga-05 has a 52% similarity with the type species of the genus Rhodobaca. On the basis of the obtained genotypic data and some phenotypic properties (dwelling in a hypersaline soda lake of Siberia, moderate halophily, ability to grow at relatively low temperatures, etc.), the isolated strain of purple bacteria was described as a new species of the genus Rhodobaca, Rca. barguzinensis sp. nov.
Asunto(s)
Rhodobacter/aislamiento & purificación , Microbiología del Agua , Anaerobiosis , Bacterioclorofila A/aislamiento & purificación , Carotenoides/aislamiento & purificación , Medios de Cultivo , Agua Dulce/microbiología , Sedimentos Geológicos/microbiología , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Rhodobacter/química , Rhodobacter/clasificación , Rhodobacter/citología , Rhodobacter/fisiología , Homología de Secuencia , Siberia , Cloruro de SodioRESUMEN
A Gram-negative, non-motile, oval to rod-shaped, psychrotolerant, phototrophic, purple non-sulfur bacterium (designated strain JA139T) was isolated from a snow sample from Changla Pass in the Indian Himalayas. Strain JA139T had vesicular-type intracytoplasmic membrane structures and contained bacteriochlorophyll a and most probably spheroidene-like carotenoids. Biotin, niacin and thiamine were required for growth of strain JA139T. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that the strain clustered with species of the genus Rhodobacter but was distinctly separate from all recognized members of the family Rhodobacteraceae. Based on the genotypic and phenotypic differences observed between strain JA139T and recognized Rhodobacter species, strain JA139T is considered to represent a novel species of the genus, for which the name Rhodobacter changlensis sp. nov. is proposed. The type strain is JA139T (=DSM 18774T=CCUG 53722T=JCM 14338T).
Asunto(s)
Frío , Procesos Fototróficos , Rhodobacter/clasificación , Nieve/microbiología , Alphaproteobacteria/clasificación , Alphaproteobacteria/genética , Alphaproteobacteria/crecimiento & desarrollo , Alphaproteobacteria/fisiología , Técnicas de Tipificación Bacteriana , ADN Bacteriano/análisis , ADN Ribosómico/análisis , Genes de ARNr , Genotipo , India , Datos de Secuencia Molecular , Fenotipo , Filogenia , ARN Ribosómico 16S/genética , Rhodobacter/genética , Rhodobacter/crecimiento & desarrollo , Rhodobacter/fisiología , Análisis de Secuencia de ADN , Especificidad de la EspecieRESUMEN
The photosynthetic pigments of phototrophic microorganisms cover different regions of the solar light spectrum. Utilization of the light spectrum can be interpreted in terms of classical niche theory, as the light spectrum offers opportunities for niche differentiation and allows coexistence of species absorbing different colors of light. However, which spectral niches are available for phototrophic microorganisms? Here, we show that the answer is hidden in the vibrations of the water molecule. Water molecules absorb light at specific wavebands that match the energy required for their stretching and bending vibrations. Although light absorption at these specific wavelengths appears only as subtle shoulders in the absorption spectrum of pure water, these subtle shoulders create large gaps in the underwater light spectrum due to the exponential nature of light attenuation. Model calculations show that the wavebands between these gaps define a series of distinct niches in the underwater light spectrum. Strikingly, these distinct spectral niches match the light absorption spectra of the major photosynthetic pigments on our planet. This suggests that vibrations of the water molecule have played a major role in the ecology and evolution of phototrophic microorganisms.
Asunto(s)
Fenómenos Fisiológicos Bacterianos , Vibración , Microbiología del Agua , Evolución Biológica , Chlorobi/metabolismo , Chromatiaceae/metabolismo , Cianobacterias/metabolismo , Ecología , Luz , Fotosíntesis , Fitoplancton/metabolismo , Pigmentos Biológicos/metabolismo , Rhodobacter/metabolismo , Rhodobacter/fisiologíaRESUMEN
A rod-shaped, phototrophic, purple non-sulfur bacterium was isolated in pure culture from seawater collected from the seashore of Visakhapatnam, on the east coast of India, in a medium that contained 2 % NaCl (w/v). Strain JA123(T) was Gram-negative and non-motile and had a requirement for NaCl. Photo-organoheterotrophic and chemo-organoheterotrophic growth occurred with organic compounds as carbon sources and electron donors. Photolithoautotrophic, chemolithoautotrophic and fermentative growth could not be demonstrated. Strain JA123(T) contained vesicular intracellular photosynthetic membrane structures. Bacteriochlorophyll a and probably carotenoids of the spheroidene series were present as photosynthetic pigments. Biotin was required for growth. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA123(T) clustered with species of the genus Rhodobacter. Based on 16S rRNA gene sequence analysis and morphological and physiological characteristics, strain JA123(T) is sufficiently different from other Rhodobacter species to propose a novel species, Rhodobacter vinaykumarii sp. nov., to accommodate this strain; the type strain is JA123(T) (=DSM 18714(T) =JCM 14544(T) =CCUG 54311(T)).
Asunto(s)
Rhodobacter/clasificación , Rhodobacter/aislamiento & purificación , Agua de Mar/microbiología , Técnicas de Tipificación Bacteriana , Bacterioclorofila A/análisis , Biotina/metabolismo , Carotenoides/análisis , Citoplasma/química , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Fermentación , Genes de ARNr , Concentración de Iones de Hidrógeno , India , Locomoción/fisiología , Datos de Secuencia Molecular , Orgánulos/metabolismo , Compuestos Orgánicos/metabolismo , Procesos Fototróficos , Filogenia , Pigmentos Biológicos/biosíntesis , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Rhodobacter/genética , Rhodobacter/fisiología , Análisis de Secuencia de ADN , Homología de Secuencia de Ácido Nucleico , Cloruro de Sodio/metabolismoRESUMEN
Twelve strains of gram-negative, nonfermenting rods recovered mainly from septicemic patients were studied using conventional and molecular methods. The phenotypic profiles of these strains most closely resembled Psychrobacter phenylpyruvicus. They produced catalase, oxidase, urease, and H(2)S (lead acetate paper) but did not produce indole, reduce nitrate or nitrite, or hydrolyze gelatin or esculin. No acid production was observed in a King's oxidation-fermentation base containing d-glucose, d-xylose, d-mannitol, sucrose, lactose, or maltose. All strains were nonmotile and nonpigmented. Most strains produced green discoloration on blood agar. All strains grew at 25 degrees C and 35 degrees C and most grew on MacConkey agar. They shared a common cellular fatty acid (CFA) profile characterized by large amounts (56% to 90%) of 18:1omega7c and the presence of 3-OH-10:0, 16:1omega7c, 16:0, and 19:0cycomega8c that overall was most similar to that of Rhodobacter species but was quite distinct from that of P. phenylpyruvicus. The MICs for most beta-lactams, fluoroquinolones, aminoglycosides, and carbapenems were low. MICs for aztreonam and piperacillin were higher, with MICs for some strains of > 64 mg/liter and > 128 mg/liter, respectively. Polyphasic analysis of these strains, including morphological, biochemical, CFA composition, DNA-DNA hybridization, 16S rRNA gene sequencing, and percent guanine-plus-cytosine (G+C) content analysis, demonstrated that these strains and Rhodobacter massiliensis represent a new genus, "Haematobacter" (proposed name), with the species H. missouriensis (type strain H1892(T) = CCUG 52307(T) = CIP 109176(T)) and H. massiliensis comb. nov. (type strain Framboise(T) = CCUG 47968(T) = CIP 107725(T)) and an unnamed genomospecies.
Asunto(s)
Bacteriemia/microbiología , Rhodobacter/clasificación , Rhodobacteraceae/clasificación , Antibacterianos/farmacología , Técnicas de Tipificación Bacteriana , Composición de Base , Secuencia de Bases , Metabolismo de los Hidratos de Carbono , ADN Bacteriano/química , ADN Ribosómico/química , Enzimas/análisis , Esculina/metabolismo , Ácidos Grasos/análisis , Gelatina/metabolismo , Humanos , Pruebas de Sensibilidad Microbiana , Datos de Secuencia Molecular , Movimiento , Nitratos/metabolismo , Nitritos/metabolismo , Filogenia , ARN Ribosómico 16S/genética , Rhodobacter/citología , Rhodobacter/aislamiento & purificación , Rhodobacter/fisiología , Rhodobacteraceae/citología , Rhodobacteraceae/aislamiento & purificación , Rhodobacteraceae/fisiología , TemperaturaRESUMEN
Purple bacteria control the level of expression and the composition of their photosystem according to light and redox conditions. This control involves several regulatory systems that have been now well characterized. Among them, the PpsR regulator plays a central role, because it directly or indirectly controls the synthesis of all of the different components of the photosystem. In this review, we report our knowledge of the PpsR protein, highlighting the diversity of its mode of action and focusing on the proteins identified in four model purple bacteria (Rhodobacter capsulatus, Rhodobacter sphaeroides, Rubrivivax gelatinosus, Bradyrhizobium ORS278). This regulator exhibits unique regulatory features in each bacterium: it can activate and/or repress the expression of photosynthesis genes, its activity can be modulated or not by the redox conditions, it can interact with other specific regulators and therefore be involved differently in light and/or redox regulatory circuits.
Asunto(s)
Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/metabolismo , Regulación Bacteriana de la Expresión Génica , Fotosíntesis/genética , Proteínas Represoras/genética , Proteínas Represoras/metabolismo , Proteínas Bacterianas/química , Bradyrhizobium/genética , Bradyrhizobium/fisiología , ADN Bacteriano/metabolismo , Proteínas de Unión al ADN/química , Luz , Proteobacteria/genética , Proteobacteria/fisiología , Proteínas Represoras/química , Rhodobacter/genética , Rhodobacter/fisiologíaRESUMEN
Addition of diesel fuel and waste engine oil to soil was found to cause biostimulation of hydrocarbon-oxidizing microorganisms. Corynebacteria constitute a large group of hydrocarbon-oxidizing microorganisms. Addition of a liquid culture of photosynthetic bacteria to soil not only facilitates degradation of petroleum products, but also stimulates growth of hydrocarbon-oxidizing microorganisms. Combined addition of photosynthetic bacteria and compost to soil polluted with petroleum products causes even a more significant increase in the count of hydrocarbon-oxidizing bacteria and substantially increases the rate of pollutant degradation.
Asunto(s)
Petróleo/metabolismo , Rhodobacter/fisiología , Rhodocyclaceae/fisiología , Microbiología del Suelo , Contaminantes del Suelo/metabolismo , Suelo , Biodegradación Ambiental , Corynebacterium/crecimiento & desarrollo , Corynebacterium/metabolismo , Hidrocarburos/química , Hidrocarburos/metabolismo , Rhodobacter/metabolismo , Rhodocyclaceae/metabolismoRESUMEN
On the basis of data from phenotypic and genotypic characterization and analysis of 16S rRNA gene sequences, two novel species belonging to the genus Sulfitobacter are described. Strains KMM 3584(T), a pale-yellowish, non-motile strain isolated from a starfish (Stellaster equestris), and KMM 3554(T), which is motile by means of a single subpolar flagellum and was isolated from sea grass (Zostera marina), are marine, Gram-negative, aerobic, rod-shaped organisms. Both strains have the ability to degrade gelatin, but not casein, chitin, agar, DNA, Tween 80 or starch. Strain KMM 3584(T) decomposed alginate and grew at NaCl concentrations of 1-8 % and temperatures of 12-37 degrees C, whereas strain KMM 3554(T) grew in 1-12 % NaCl and at temperatures of 10-30 degrees C. The predominant fatty acid was 18 : 1omega7, amounting to up to 80 % of the total fatty acids. The other characteristic feature was the presence of 18 : 2 isomers. The DNA G+C contents of KMM 3584(T) and KMM 3554(T) were respectively 60.0 and 63.7 mol%. The level of DNA similarity between the two strains was 33 %. DNA from KMM 3584(T) and KMM 3554(T) had hybridization values of 5-24 % and 10-41 %, respectively, with DNA from the type strains of Sulfitobacter pontiacus, Sulfitobacter brevis, Sulfitobacter mediterraneus and Staleya guttiformis. It is proposed that strains KMM 3584(T) (=LMG 20554(T)=ATCC BAA-321(T)) and KMM 3554(T) (=LMG 20555(T)=ATCC BAA-320(T)) represent two novel species, Sulfitobacter delicatus sp. nov. and Sulfitobacter dubius sp. nov., respectively.