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1.
Environ Res ; 251(Pt 2): 118640, 2024 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-38479720

RESUMEN

The effects of long-term ammunition pollution on microecological characteristics were analyzed to formulate microbial remediation strategies. Specifically, the response of enzyme systems, N/O stable isotopes, ion networks, and microbial community structure/function levels were analyzed in long-term (50 years) ammunition-contaminated water/sediments from a contamination site, and a compound bacterial agent capable of efficiently degrading trinitrotoluene (TNT) while tolerating many heavy metals was selected to remediate the ammunition-contaminated soil. The basic physical and chemical properties of the water/sediment (pH (up: 0.57-0.64), nitrate (up: 1.31-4.28 times), nitrite (up: 1.51-5.03 times), and ammonium (up: 7.06-70.93 times)) were changed significantly, and the significant differences in stable isotope ratios of N and O (nitrate nitrogen) confirmed the degradability of TNT by indigenous microorganisms exposed to long-term pollution. Heavy metals, such as Pb, Zn, Cu, Cd, Cs, and Sb, have synergistic toxic effects in ammunition-contaminated sites, and significantly decreased the microbial diversity and richness in the core pollution area. However, long-term exposure in the edge pollution area induced microorganisms to use TNT as a carbon and nitrogen sources for life activities and growth and development. The Bacteroidales microbial group was significantly inhibited by ammunition contamination, whereas microorganisms such as Proteobacteria, Acidobacteriota, and Comamonadaceae gradually adapted to this environmental stress by regulating their development and stress responses. Ammunition pollution significantly affected DNA replication and gene regulation in the microecological genetic networks and increased the risk to human health. Mg and K were significantly involved in the internal mechanism of microbial transport, enrichment, and metabolism of TNT. Nine strains of TNT-utilizing microbes were screened for efficient TNT degradation and tolerance to typical heavy metals (copper, zinc and lead) found in contaminated sites, and a compound bacterial agent prepared for effective repair of ammunition-contaminated soil significantly improved the soil ecological environment.


Asunto(s)
Sedimentos Geológicos , Contaminantes Químicos del Agua , China , Contaminantes Químicos del Agua/análisis , Contaminantes Químicos del Agua/toxicidad , Sedimentos Geológicos/microbiología , Sedimentos Geológicos/química , Biodegradación Ambiental , Metales Pesados/toxicidad , Metales Pesados/análisis , Bacterias/metabolismo , Sustancias Explosivas/metabolismo , Trinitrotolueno/metabolismo
2.
Redox Biol ; 72: 103082, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38527399

RESUMEN

The explosive compound 2,4,6-trinitrotoluene (TNT) is well known as a major component of munitions. In addition to its potential carcinogenicity and mutagenicity in humans, recent reports have highlighted TNT toxicities in diverse organisms due to its occurrence in the environment. These toxic effects have been linked to the intracellular metabolism of TNT, which is generally characterised by redox cycling and the generation of noxious reactive molecules. The reactive intermediates formed, such as nitroso and hydroxylamine compounds, also interact with oxygen molecules and cellular components to cause macromolecular damage and oxidative stress. The current review aims to highlight the crucial role of TNT metabolism in mediating TNT toxicity, via increased generation of reactive oxygen species. Cellular proliferation of reactive species results in depletion of cellular antioxidant enzymes, DNA and protein adduct formation, and oxidative stress. While TNT toxicity is well known, its ability to induce oxidative stress, resulting from its reductive activation, suggests that some of its toxic effects may be caused by its reactive metabolites. Hence, further research on TNT metabolism is imperative to elucidate TNT-induced toxicities.


Asunto(s)
Estrés Oxidativo , Especies Reactivas de Oxígeno , Trinitrotolueno , Trinitrotolueno/metabolismo , Trinitrotolueno/toxicidad , Humanos , Especies Reactivas de Oxígeno/metabolismo , Estrés Oxidativo/efectos de los fármacos , Activación Metabólica , Animales , Sustancias Explosivas/metabolismo , Sustancias Explosivas/toxicidad , Oxidación-Reducción
3.
Environ Sci Technol ; 57(1): 666-673, 2023 01 10.
Artículo en Inglés | MEDLINE | ID: mdl-36445010

RESUMEN

Ammunition wastewater contains toxic nitrated explosives like RDX and oxyanions like nitrate and perchlorate. Its treatment is challenged by low efficiency due to contaminant recalcitrance and high cost due to multiple processes needed for separately removing different contaminant types. This paper reports a H2-based low-energy strategy featuring the treatment of explosives via catalytic denitration followed by microbial mineralization coupled with oxyanion reduction. After a nitrate- and perchlorate-reducing biofilm incapable of RDX biodegradation was coated with palladium nanoparticles (Pd0NPs), RDX was rapidly denitrated with a specific catalytic activity of 8.7 gcat-1 min-1, while biological reductions of nitrate and perchlorate remained efficient. In the subsequent 30-day continuous test, >99% of RDX, nitrate, and perchlorate were coremoved, and their effluent concentrations were below their respective regulation levels. Detected intermediates and shallow metagenome analysis suggest that the intermediates after Pd-catalytic denitration of RDX ultimately were enzymatically utilized by the nitrate- and perchlorate-reducing bacteria as additional electron donor sources.


Asunto(s)
Sustancias Explosivas , Nanopartículas del Metal , Contaminantes Químicos del Agua , Purificación del Agua , Sustancias Explosivas/análisis , Sustancias Explosivas/metabolismo , Percloratos/análisis , Percloratos/metabolismo , Nitratos/análisis , Nitratos/metabolismo , Contaminantes Químicos del Agua/análisis , Paladio/análisis , Reactores Biológicos/microbiología
4.
Biotechnol Bioeng ; 119(9): 2437-2446, 2022 09.
Artículo en Inglés | MEDLINE | ID: mdl-35706349

RESUMEN

Insensitive munitions compounds (IMCs), such as 2,4-dinitroanisole (DNAN) and 3-nitro-1,2,4-triazol-5-one (NTO), are replacing conventional explosives in munitions formulations. Manufacture and use of IMCs generate waste streams in manufacturing plants and load/assemble/pack facilities. There is a lack of practical experience in executing biodegradation strategies to treat IMCs waste streams. This study establishes a proof-of-concept that bacterial consortia can be designed to mineralize IMCs and co-occurring nitroaromatics in waste streams. First, DNAN, 4-nitroanisole (4-NA), and 4-chloronitrobenzene (4-CNB) in a synthetic DNAN-manufacturing waste stream were biodegraded using an aerobic fluidized-bed reactor (FBR) inoculated with Nocardioides sp. JS 1661 (DNAN degrader), Rhodococcus sp. JS 3073 (4-NA degrader), and Comamonadaceae sp. LW1 (4-CNB degrader). No biodegradation was detected when the FBR was operated under anoxic conditions. Second, DNAN and NTO were biodegraded in a synthetic load/assemble/pack waste stream during a sequential treatment comprising: (i) aerobic DNAN biodegradation in the FBR; (ii) anaerobic NTO biotransformation to 3-amino-1,2,4-triazol-5-one (ATO) by an NTO-respiring enrichment; and (iii) aerobic ATO mineralization by an ATO-oxidizing enrichment. Complete biodegradation relied on switching redox conditions. The results provide the basis for designing consortia to treat mixtures of IMCs and related waste products by incorporating microbes with the required catabolic capabilities.


Asunto(s)
Sustancias Explosivas , Nitrocompuestos , Anisoles/metabolismo , Bacterias/metabolismo , Biodegradación Ambiental , Biotransformación , Sustancias Explosivas/metabolismo , Nitrocompuestos/metabolismo , Triazoles/metabolismo
5.
Biosens Bioelectron ; 207: 114205, 2022 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-35339074

RESUMEN

The detection of mine-based explosives poses a serious threat to the lives of deminers, and carcinogenic residues may cause severe environmental pollution. Whole-cell biosensors that can detect on-site in dangerous or inaccessible environments have great potential to replace conventional methods. Synthetic biology based on engineering modularity serves as a new tool that could be used to engineer microbes to acquire desired functions through artificial design and precise regulation. In this study, we designed artificial genetic circuits in Escherichia coli MG1655 by reconstructing the transcription factor YhaJ-based system to detect explosive composition 2,4-dinitrotoluene (2,4-DNT). These genetic circuits were optimized at the transcriptional, translational, and post-translational levels. The binding affinity of the transcription factor YhaJ with inducer 2,4-DNT metabolites was enhanced via directed evolution, and several activator binding sites were inserted in sensing yqjF promoter (PyqjF) to further improve the output level. The optimized biosensor PyqjF×2-TEV-(mYhaJ + GFP)-Ssr had a maximum induction ratio of 189 with green fluorescent signal output, and it could perceive at least 1 µg/mL 2,4-DNT. Its effective and robust performance was verified in different water samples. Our results demonstrate the use of synthetic biology tools to systematically optimize the performance of sensors for 2,4-DNT detection, that lay the foundation for practical applications.


Asunto(s)
Técnicas Biosensibles , Sustancias Explosivas , Técnicas Biosensibles/métodos , Dinitrobencenos , Escherichia coli/genética , Escherichia coli/metabolismo , Sustancias Explosivas/metabolismo , Factores de Transcripción/genética
6.
Methods Mol Biol ; 2326: 315-325, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34097279

RESUMEN

Hexahydro-1,3,5-trinitro-1,3,5-triazine, commonly called RDX, is an important explosive, which is widely used in military and civic activities. As it is used, RDX is widely found in many locations and caused soil and water contamination. Many studies show that RDX is toxic to many organisms, including plants, animals, and microbes. RDX causes genetic toxicity and neurotoxicity as well as potential carcinogenesis. Even it is worse that RDX can be biotransformed into other N-nitroso derivatives, such as MNX, DNX, and TNX; these derivatives can be found in both naturally in RDX-contaminated soil and also in the animal GI tracks. To study the potential effect of RDX and its N-nitroso derivatives, this chapter presents a step-by-step method for detect RDX and its N-nitroso derivatives in animal stomach and GI tracts followed RDX exposure by gas chromatography with electron capture detector (GC/ECD). This method can also be used to detect RDX and its N-nitroso derivatives in other tissues and in other animals and plants.


Asunto(s)
Sustancias Explosivas/análisis , Tracto Gastrointestinal/metabolismo , Compuestos Nitrosos/análisis , Triazinas/análisis , Alimentación Animal/análisis , Animales , Sustancias Explosivas/metabolismo , Femenino , Ratones , Compuestos Nitrosos/metabolismo , Triazinas/metabolismo
7.
Nat Biotechnol ; 39(10): 1216-1219, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-33941930

RESUMEN

The explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), a major component of munitions, is used extensively on military training ranges. As a result, widespread RDX pollution in groundwater and aquifers in the United States is now well documented. RDX is toxic, but its removal from training ranges is logistically challenging, lacking cost-effective and sustainable solutions. Previously, we have shown that thale cress (Arabidopsis thaliana) engineered to express two genes, xplA and xplB, encoding RDX-degrading enzymes from the soil bacterium Rhodococcus rhodochrous 11Y can break down this xenobiotic in laboratory studies. Here, we report the results of a 3-year field trial of XplA/XplB-expressing switchgrass (Panicum virgatum) conducted on three locations in a military site. Our data suggest that XplA/XplB switchgrass has in situ efficacy, with potential utility for detoxifying RDX on live-fire training ranges, munitions dumps and minefields.


Asunto(s)
Proteínas Bacterianas/metabolismo , Sustancias Explosivas/metabolismo , Panicum/metabolismo , Contaminantes del Suelo/metabolismo , Proteínas Bacterianas/genética , Biodegradación Ambiental , Panicum/genética , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/metabolismo , Rhodococcus/genética , Triazinas/metabolismo , Estados Unidos
8.
Anal Bioanal Chem ; 413(11): 3069-3079, 2021 May.
Artículo en Inglés | MEDLINE | ID: mdl-33723626

RESUMEN

Mitigation of the peroxide explosive threat, specifically triacetone triperoxide (TATP) and hexamethylene triperoxide diamine (HMTD), is a priority among the law enforcement community, as scientists and canine (K9) units are constantly working to improve detection. We propose the use of paper spray ionization-high-resolution mass spectrometry (PSI-HRMS) for detection of peroxide explosives in biological matrices. Occurrence of peroxide explosives and/or their metabolites in biological samples, obtained from urine or blood tests, give scientific evidence of peroxide explosives exposure. PSI-HRMS promote analysis of samples in situ by eliminating laborious sample preparation steps. However, it increases matrix background issues, which were overcome by the formation of multiple alkali metal adducts with the peroxide explosives. Multiple ion formation increases confidence when identifying these peroxide explosives in direct sample analysis. Our previous work examined aspects of TATP metabolism. Herein, we investigate the excretion of a TATP glucuronide conjugate in the urine of bomb-sniffing dogs and demonstrate its detection using PSI from the in vivo sample.


Asunto(s)
Compuestos Bicíclicos Heterocíclicos con Puentes/análisis , Sustancias Explosivas/análisis , Compuestos Heterocíclicos con 1 Anillo/análisis , Espectrometría de Masas/métodos , Peróxidos/análisis , Animales , Compuestos Bicíclicos Heterocíclicos con Puentes/metabolismo , Compuestos Bicíclicos Heterocíclicos con Puentes/toxicidad , Cromatografía Líquida de Alta Presión/métodos , Perros , Sustancias Explosivas/metabolismo , Sustancias Explosivas/toxicidad , Compuestos Heterocíclicos con 1 Anillo/química , Compuestos Heterocíclicos con 1 Anillo/toxicidad , Microsomas Hepáticos/metabolismo , Exposición Profesional , Papel , Peróxidos/química , Peróxidos/toxicidad
9.
J Mater Chem B ; 9(1): 147-158, 2021 01 07.
Artículo en Inglés | MEDLINE | ID: mdl-33226396

RESUMEN

Pore-forming toxins (PFTs), the most common virulence proteins, are promising therapeutic keys in bacterial infections. CAL02, consisting of sphingomyelin (Sm) and containing a maximum ratio of cholesterol (Ch), has been applied to sequester PFTs. However, Sm, a saturated phospholipid, leads to structural rigidity of the liposome, which does not benefit PFT combination. Therefore, in order to decrease the membrane rigidity and improve the fluidity of liposomes, we have introduced an unsaturated phospholipid, phosphatidylcholine (Pc), to the saturated Sm. In this report, a soft nanoliposome (called CSPL), composed of Ch, Sm and Pc, was artificially prepared. In order to further improve its antibacterial effect, vancomycin (Van) was loaded into the hydrophilic core of CSPL, where Van can be released radically at the infectious site through transmembrane pores formed by the PFTs in CSPL. This soft Van@CSPL nanoliposome with detoxification/drug release was able to inhibit the possibility of antibiotic resistance and could play a better role in treating severe invasive infections in mice.


Asunto(s)
Antibacterianos/metabolismo , Colesterol/metabolismo , Sustancias Explosivas/metabolismo , Nanopartículas/metabolismo , Esfingomielinas/metabolismo , Infecciones Cutáneas Estafilocócicas/metabolismo , Animales , Antibacterianos/administración & dosificación , Antiinfecciosos/administración & dosificación , Antiinfecciosos/metabolismo , Colesterol/administración & dosificación , Sustancias Explosivas/administración & dosificación , Femenino , Células Endoteliales de la Vena Umbilical Humana/efectos de los fármacos , Células Endoteliales de la Vena Umbilical Humana/metabolismo , Humanos , Liposomas , Ratones , Nanopartículas/administración & dosificación , Esfingomielinas/administración & dosificación , Infecciones Cutáneas Estafilocócicas/tratamiento farmacológico , Staphylococcus aureus/efectos de los fármacos , Staphylococcus aureus/metabolismo , Virulencia/efectos de los fármacos , Virulencia/fisiología
10.
Photosynth Res ; 145(2): 145-157, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-32632533

RESUMEN

Bacterial reaction centers (BRC) from Rhodobacter sphaeroides were found to accelerate, about 100-fold, the reaction between tetryl (2,4,6-trinitrophenylmethylnitramine) explosive and n-lauryl-N-N-dimethylamine-N-oxide (LDAO) that results in the formation of picric acid-like product with characteristic UV-VIS absorption spectrum with peaks at 345 and 415 nm. Moreover, this product also affects the spectra of BRC cofactors in the NIR spectral region and stabilizes the conformational changes associated with slow charge recombination. The evolution of the NIR absorption changes correlated with the kinetics of the product formation. Comparison between the wild-type and the R26 carotenoid-less strain indicates that tetryl-LDAO reaction is roughly five times faster for R26, which allows for identifying the carotenoid binding site as the optimal reaction site. Another, less-defined reaction site is located in the BRC's hydrophobic cavity. These effects are highly selective for tetryl and not observed for several other widespread nitric explosives; slowed-down charge recombination allows for distinguishing between tetryl and QB-site herbicides. The current limit of detection is in the ppb range or ~ 100 nM. Details of the molecular mechanisms of the reactions and perspectives of using these effects in bioassays or biosensors for explosives detection are also discussed.


Asunto(s)
Compuestos de Anilina/metabolismo , Detergentes/metabolismo , Dimetilaminas/metabolismo , Sustancias Explosivas/metabolismo , Nitrobencenos/metabolismo , Proteínas del Complejo del Centro de Reacción Fotosintética/metabolismo , Rhodobacter sphaeroides/metabolismo , Compuestos de Anilina/química , Carotenoides/metabolismo , Detergentes/química , Dimetilaminas/química , Transporte de Electrón , Sustancias Explosivas/química , Cinética , Límite de Detección , Nitrobencenos/química , Proteínas del Complejo del Centro de Reacción Fotosintética/química , Rhodobacter sphaeroides/química
11.
J Hazard Mater ; 387: 121529, 2020 04 05.
Artículo en Inglés | MEDLINE | ID: mdl-31911385

RESUMEN

In situ bioaugmentation for cleanup of an hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX)-contaminated groundwater plume was recently demonstrated. Results of a forced-gradient, field-scale cell transport test with Gordonia sp. KTR9 and Pseudomonas fluorescens strain I-C cells (henceforth "KTR9" and "Strain I-C") showed these strains were transported 13 m downgradient over 1 month. Abundances of xplA and xenB genes, respective indicators of KTR9 and Strain I-C, approached injection well cell densities at 6 m downgradient, whereas gene abundances (and conservative tracer) had begun to increase at 13 m downgradient at test conclusion. In situ push-pull tests were subsequently completed to measure RDX degradation rates in the bioaugmented wells under ambient gradient conditions. Time-series monitoring of RDX, RDX end-products, conservative tracer, xplA and xenB gene copy numbers and XplA and XenB protein abundance were used to assess the efficacy of bioaugmentation and to estimate the apparent first-order RDX degradation rates during each test. A collective evaluation of redox conditions, RDX end-products, varied RDX degradation kinetics, and biomarkers indicated that Strain I-C and KTR9 rapidly degraded RDX. Results showed bioaugmentation is a viable technology for accelerating RDX cleanup in the demonstration site aquifer and may be applicable to other sites. Full-scale implementation considerations are discussed.


Asunto(s)
Sustancias Explosivas/metabolismo , Triazinas/metabolismo , Contaminantes Químicos del Agua/metabolismo , Biodegradación Ambiental , Sustancias Explosivas/química , Bacteria Gordonia/metabolismo , Agua Subterránea/química , Cinética , Pseudomonas fluorescens/metabolismo , Triazinas/química , Contaminantes Químicos del Agua/química
12.
Int J Mol Sci ; 20(22)2019 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-31703334

RESUMEN

Explosives molecules have been widely used since World War II, leading to considerable contamination of soil and groundwater. Recently, bioremediation has emerged as an environmentally friendly approach to solve such contamination issues. However, the 1,3,5,7-tetranitro-1,3,5,7-tetrazocane (HMX) explosive, which has very low solubility in water, does not provide satisfying results with this approach. In this study, we used a rational design strategy for improving the specificity of the nitroreductase from E. Cloacae (PDB ID 5J8G) toward HMX. We used the Coupled Moves algorithm from Rosetta to redesign the active site around HMX. Molecular Dynamics (MD) simulations and affinity calculations allowed us to study the newly designed protein. Five mutations were performed. The designed nitroreductase has a better fit with HMX. We observed more H-bonds, which productively stabilized the HMX molecule for the mutant than for the wild type enzyme. Thus, HMX's nitro groups are close enough to the reductive cofactor to enable a hydride transfer. Also, the HMX affinity for the designed enzyme is better than for the wild type. These results are encouraging. However, the total reduction reaction implies numerous HMX derivatives, and each of them has to be tested to check how far the reaction can' go.


Asunto(s)
Azocinas , Proteínas Bacterianas , Enterobacter cloacae/enzimología , Sustancias Explosivas , Nitrorreductasas , Azocinas/química , Azocinas/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Biodegradación Ambiental , Sustancias Explosivas/química , Sustancias Explosivas/metabolismo , Nitrorreductasas/química , Nitrorreductasas/metabolismo
13.
J Chem Inf Model ; 59(9): 3860-3870, 2019 09 23.
Artículo en Inglés | MEDLINE | ID: mdl-31454238

RESUMEN

The nitro-explosive compounds 2,4,6-trinitrotoluene, 2,4,6-trinitrophenol, and 1,2,3-trinitroglycerol are persistent environmental contaminants. The presence of different functional groups in these molecules represents a great challenge to enzymatic catalysis. The chemical variety of these three substrates is such that they do not bind and interact with catalytic residues within an enzyme with the same affinity. In this context, two Xenobiotic Reductase enzymes produced by the bacteria Pseudomonas putida can catalyze the reduction of these compounds with different affinities and regioselectivity. The structural bases that support this substrate promiscuity and catalytic preferences are unknown. Therefore, through molecular dynamics simulations and free energy calculations, we explored the structural properties driving the specific interactions of these enzymes with their substrates and cofactor. Models of Xenobiotic Reductase A and B enzymes in complex with 2,4,6-trinitrotoluene, 2,4,6-trinitrophenol, or 1,2,3-trinitroglycerol were built, and the ligand enzyme interaction was simulated by molecular dynamics. The structural analysis of the molecular dynamics simulations shows that loops 3, 5, 7, 9, 11, and 13 of Xenobiotic Reductase B, and loops 4, 5, 7, 11, 13, and 15 Xenobiotic Reductase A, are in contact with the ligands during the first stages of the molecular recognition. These loops are the most flexible regions for both enzymes; however, Xenobiotic Reductase B presents a greater range of movement and a higher number of residues interacting with the ligands. Finally, the distance between the cofactor and the different reactive groups in the substrate reflects the regioselectivity of the enzymes, and the free energy calculations are consistent with the substrate specificity of both enzymes studied. The simulation shows a stable interaction between the aromatic ring of the substrates and Xenobiotic Reductase B. In contrast, a less stable interaction with the different nitro groups of the aromatic ligands was observed. In the case of 1,2,3-trinitroglycerol, Xenobiotic Reductase B interacts more closely with the nitro groups of carbon 1 or 3, while Xenobiotic Reductase A is more selective by nitro groups of carbon 2. The obtained results suggest that the flexibility of the loops in Xenobiotic Reductase B and the presence of polar and aromatic residues present in loops 5 and 7 are fundamental to determine the affinity of the enzyme with the different substrates, and they also contribute to the proper orientation of the ligands that directs the catalytic reaction.


Asunto(s)
Proteínas Bacterianas/metabolismo , Sustancias Explosivas/química , Sustancias Explosivas/metabolismo , Flavoproteínas/metabolismo , Simulación de Dinámica Molecular , Nitrocompuestos/química , Nitrocompuestos/metabolismo , Oxidorreductasas/metabolismo , Proteínas Bacterianas/química , Flavoproteínas/química , Oxidorreductasas/química , Unión Proteica , Conformación Proteica , Pseudomonas putida/enzimología , Estereoisomerismo , Especificidad por Sustrato
14.
Appl Microbiol Biotechnol ; 103(17): 7161-7175, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31352507

RESUMEN

The explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a contaminant at many military sites. RDX bioremediation as a clean-up approach has been gaining popularity because of cost benefits compared to other methods. RDX biodegradation has primarily been linked to six functional genes (diaA, nfsI, pnrB, xenA, xenB, xplA). However, current methods for gene quantification have the risk of false negative results because of low theoretical primer coverage. To address this, the current study designed new primer sets using the EcoFunPrimer tool based on sequences collected by the Functional Gene Pipeline and Repository and these were verified based on residues and motifs. The primers were also designed to be compatible with the SmartChip Real-Time PCR system, a massively parallel singleplex PCR platform (high throughput qPCR), that enables quantitative gene analysis using 5,184 simultaneous reactions on a single chip with low volumes of reagents. This allows multiple genes and/or multiple primer sets for a single gene to be used with multiple samples. Following primer design, the six genes were quantified in RDX-contaminated groundwater (before and after biostimulation), RDX-contaminated sediment, and uncontaminated samples. The final 49 newly designed primer sets improved upon the theoretical coverage of published primer sets, and this corresponded to more detections in the environmental samples. All genes, except diaA, were detected in the environmental samples, with xenA and xenB being the most predominant. In the sediment samples, nfsI was the only gene detected. The new approach provides a more comprehensive tool for understanding RDX biodegradation potential at contaminated sites.


Asunto(s)
Proteínas Bacterianas/genética , Contaminantes Ambientales/metabolismo , Sustancias Explosivas/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Triazinas/metabolismo , Proteínas Bacterianas/química , Biodegradación Ambiental , Cartilla de ADN/genética , Sedimentos Geológicos/microbiología , Agua Subterránea/microbiología
15.
Planta ; 249(4): 1007-1015, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30488285

RESUMEN

MAIN CONCLUSION: Transgenic western wheatgrass degrades the explosive RDX and detoxifies TNT. Contamination, from the explosives, hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine (RDX), and 2, 4, 6-trinitrotoluene (TNT), especially on live-fire training ranges, threatens environmental and human health. Phytoremediation is an approach that could be used to clean-up explosive pollution, but it is hindered by inherently low in planta RDX degradation rates, and the high phytotoxicity of TNT. The bacterial genes, xplA and xplB, confer the ability to degrade RDX in plants, and a bacterial nitroreductase gene nfsI enhances the capacity of plants to withstand and detoxify TNT. While the previous studies have used model plant species to demonstrate the efficacy of this technology, trials using plant species able to thrive in the challenging environments found on military training ranges are now urgently needed. Perennial western wheatgrass (Pascopyrum smithii) is a United States native species that is broadly distributed across North America, well-suited for phytoremediation, and used by the US military to re-vegetate military ranges. Here, we present the first report of the genetic transformation of western wheatgrass. Plant lines transformed with xplA, xplB, and nfsI removed significantly more RDX from hydroponic solutions and retained much lower, or undetectable, levels of RDX in their leaf tissues when compared to wild-type plants. Furthermore, these plants were also more resistant to TNT toxicity, and detoxified more TNT than wild-type plants. This is the first study to engineer a field-applicable grass species capable of both RDX degradation and TNT detoxification. Together, these findings present a promising biotechnological approach to sustainably contain, remove RDX and TNT from training range soil and prevent groundwater contamination.


Asunto(s)
Sustancias Explosivas/metabolismo , Poaceae/genética , Contaminantes del Suelo/metabolismo , Triazinas/metabolismo , Trinitrotolueno/metabolismo , Biodegradación Ambiental , Ingeniería Genética/métodos , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/metabolismo , Poaceae/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa
16.
Mar Pollut Bull ; 135: 1072-1078, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30301003

RESUMEN

Bioaccumulation of 2,4,6-trinitrotoluene (TNT) and its main metabolites 2-amino-4,6-dinitrotoluene (2-ADNT) and 4-amino-2,6-dinitrotoluene (4-ADNT) leaking from corroded munitions at a munitions dumping site (Kolberger Heide, Germany) was evaluated in transplanted blue mussels (Mytilus edulis). Six moorings with mussel bags were placed east and west at varying positions near the mine mound. In order to monitor any differences resulting from changing seasons, three exposure times were chosen. First exposure period: April-July 2016 (106 days); second exposure period: July-December 2016 (146 days); third exposure period: December 2016-March 2017 (92 days). We found amounts of 4-ADNT in mussel tissue ranging from 2.40 ±â€¯2.13 to 7.76 ±â€¯1.97 ng/(g mussel wet weight). Neither TNT nor 2-ADNT could be detected. Considering seasonal differences, orientation and distances of the moorings to the mine mound no correlation between levels in mussel tissue was evident.


Asunto(s)
Mytilus edulis/metabolismo , Trinitrotolueno/farmacocinética , Contaminantes Químicos del Agua/farmacocinética , Compuestos de Anilina/farmacocinética , Animales , Ecotoxicología/métodos , Sustancias Explosivas/metabolismo , Sustancias Explosivas/farmacocinética , Alemania , Mytilus edulis/efectos de los fármacos , Estaciones del Año , Trinitrotolueno/análisis , Trinitrotolueno/metabolismo , Contaminantes Químicos del Agua/metabolismo
17.
Mar Pollut Bull ; 135: 397-410, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30301051

RESUMEN

Large amounts of ammunition containing 2,4,6-trinitrotoluene (TNT) and other substances were dumped in the Baltic Sea after WWII. Considering progressive corrosion processes, studying the transformation of TNT occurring in the environment constitutes an important aspect of a possible associated risk. This study focused on the transformations of TNT in simulated conditions of the Baltic Sea bottom sediment. Methods of analysis of TNT and selected products of its transformations were developed for that purpose. The developed methods allowed for the determination of selected compounds below 1 ng/g. Systematic monitoring of TNT transformations in the environment of the bottom sediment was performed. This allowed for the determination of the kinetics of TNT degradation and identification of degradation reaction products. Based on the obtained results, the TNT decay half-time in conditions present in the Baltic Sea was estimated to be 16.7 years for the abiotic environment and 5.6 for the biotic environment.


Asunto(s)
Cromatografía de Gases y Espectrometría de Masas/métodos , Sedimentos Geológicos/análisis , Trinitrotolueno/análisis , Contaminantes Químicos del Agua/análisis , Océano Atlántico , Biodegradación Ambiental , Sustancias Explosivas/análisis , Sustancias Explosivas/metabolismo , Cromatografía de Gases y Espectrometría de Masas/instrumentación , Cinética , Espectrometría de Masas en Tándem/métodos , Trinitrotolueno/metabolismo , Contaminantes Químicos del Agua/metabolismo
18.
Environ Sci Pollut Res Int ; 25(20): 19436-19445, 2018 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-29728973

RESUMEN

Bioremediation was performed in situ at a former military range site to assess the performance of native bacteria in degrading hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and 2,4-dinitrotoluene (2,4-DNT). The fate of these pollutants in soil and soil pore water was investigated as influenced by waste glycerol amendment to the soil. Following waste glycerol application, there was an accumulation of organic carbon that promoted microbial activity, converting organic carbon into acetate and propionate, which are intermediate compounds in anaerobic processes. This augmentation of anaerobic activity strongly correlated to a noticeable reduction in RDX concentrations in the amended soil. Changes in concentrations of RDX in pore water were similar to those observed in the soil suggesting that RDX leaching from the soil matrix, and treatment with waste glycerol, contributed to the enhanced removal of RDX from the water and soil. This was not the case with 2,4-DNT, which was neither found in pore water nor affected by the waste glycerol treatment. Results from saturated conditions and Synthetic Precipitation Leaching Procedure testing, to investigate the environmental fate of 2,4-DNT, indicated that 2,4-DNT found on site was relatively inert and was likely to remain in its current state on the site.


Asunto(s)
Biodegradación Ambiental , Sustancias Explosivas/metabolismo , Contaminantes del Suelo/metabolismo , Contaminantes Químicos del Agua/metabolismo , Bacterias/crecimiento & desarrollo , Bacterias/metabolismo , Dinitrobencenos/análisis , Dinitrobencenos/metabolismo , Sustancias Explosivas/análisis , Agua Subterránea/química , Suelo/química , Microbiología del Suelo , Contaminantes del Suelo/análisis , Triazinas/análisis , Triazinas/metabolismo , Contaminantes Químicos del Agua/análisis
19.
Biosens Bioelectron ; 102: 150-156, 2018 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-29128717

RESUMEN

The olfactory system is a natural biosensor since its peripheral olfactory sensory neurons (OSNs) respond to the external stimuli and transmit the signals to the olfactory bulb (OB) where they are integrated and processed. The axonal connections from the OSNs expressing about 1000 different types of odorant receptors are precisely organized and sorted out onto 1800 glomeruli in the OB, from which the olfactory information is delivered to and perceived by the central nervous system. This process is carried out with particularly high sensitivity, specificity and rapidity, which can be used for explosive detection. Biomimetic olfactory biosensors use various biological components from the olfactory system as sensing elements, possessing great commercial prospects. In this study, we utilized the genetically labeled murine M72 olfactory sensory neurons with the green fluorescent protein (GFP) as sensing components and obtained long-term in vivo electrophysiological recordings from the M72 OSNs by implanting the microelectrode arrays (MEAs) into the behaving mouse's OB. The electrophysiological responses showed high reliability, reproducibility and specificity for odor detection, and particularly, the high sensitivity for the detection of odorants that contain benzene rings. Furthermore, our results indicated that it can detect trinitrotoluene (TNT) in liquid at a concentration as low as 10-5M and can distinguish TNT from other chemicals with a similar structure. Thus our study demonstrated that the in vivo biomimetic olfactory system could provide novel approaches to enhancing the specificity and increasing working lifespan of olfactory biosensors capable of detecting explosives.


Asunto(s)
Técnicas Biosensibles/instrumentación , Odorantes/análisis , Neuronas Receptoras Olfatorias/metabolismo , Receptores Odorantes/metabolismo , Animales , Técnicas Biosensibles/métodos , Electrodos Implantados , Diseño de Equipo , Sustancias Explosivas/análisis , Sustancias Explosivas/metabolismo , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Masculino , Ratones Transgénicos , Microelectrodos , Modelos Moleculares , Bulbo Olfatorio/citología , Bulbo Olfatorio/fisiología , Receptores Odorantes/genética , Trinitrotolueno/análisis , Trinitrotolueno/metabolismo
20.
Appl Environ Microbiol ; 84(4)2018 02 15.
Artículo en Inglés | MEDLINE | ID: mdl-29222096

RESUMEN

DNT (2,4-dinitrotoluene), a volatile impurity in military-grade 2,4,6-trinitrotoluene (TNT)-based explosives, is a potential tracer for the detection of buried landmines and other explosive devices. We have previously described an Escherichia coli bioreporter strain engineered to detect traces of DNT and have demonstrated that the yqjF gene promoter, the sensing element of this bioreporter, is induced not by DNT but by at least one of its transformation products. In the present study, we have characterized the initial stages of DNT biotransformation in E. coli, have identified the key metabolic products in this reductive pathway, and demonstrate that the main DNT metabolite that induces yqjF is 2,4,5-trihydroxytoluene. We further show that E. coli cannot utilize DNT as a sole carbon or nitrogen source and propose that this compound is metabolized in order to neutralize its toxicity to the cells.IMPORTANCE The information provided in this article sheds new light both on the microbial biodegradability of nitroaromatic compounds and on the metabolic capabilities of E. coli By doing so, it also clarifies the pathway leading to the previously unexplained induction of the E. coli yqjF gene by 2,4-dinitrotoluene, an impurity that accompanies 2,4,6-trinitrotoluene (TNT)-based explosives. Our improved understanding of these processes will serve to molecularly enhance the performance of a previously described microbial bioreporter of buried landmines and other explosive devices, in which the yqjF gene promoter serves as the sensing element.


Asunto(s)
Dinitrobencenos/metabolismo , Escherichia coli/metabolismo , Sustancias Explosivas/análisis , Aerobiosis , Biodegradación Ambiental , Técnicas Biosensibles , Biotransformación , Carbono/farmacología , Escherichia coli/efectos de los fármacos , Sustancias Explosivas/aislamiento & purificación , Sustancias Explosivas/metabolismo , Nitrógeno/farmacología , Trinitrotolueno/análisis
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