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1.
Nat Commun ; 15(1): 7989, 2024 Sep 12.
Artículo en Inglés | MEDLINE | ID: mdl-39284811

RESUMEN

There is a growing interest in the creation of engineered condensates formed via liquid-liquid phase separation (LLPS) to exert precise cellular control in prokaryotes. However, de novo design of cellular condensates to control metabolic flux or protein translation remains a challenge. Here, we present a synthetic condensate platform, generated through the incorporation of artificial, disordered proteins to realize specific functions in Bacillus subtilis. To achieve this, the "stacking blocks" strategy is developed to rationally design a series of LLPS-promoting proteins for programming condensates. Through the targeted recruitment of biomolecules, our investigation demonstrates that cellular condensates effectively sequester biosynthetic pathways. We successfully harness this capability to enhance the biosynthesis of 2'-fucosyllactose by 123.3%. Furthermore, we find that condensates can enhance the translation specificity of tailored enzyme fourfold, and can increase N-acetylmannosamine titer by 75.0%. Collectively, these results lay the foundation for the design of engineered condensates endowed with multifunctional capacities.


Asunto(s)
Bacillus subtilis , Proteínas Bacterianas , Hexosaminas , Ingeniería Metabólica , Bacillus subtilis/metabolismo , Bacillus subtilis/genética , Ingeniería Metabólica/métodos , Hexosaminas/biosíntesis , Hexosaminas/metabolismo , Hexosaminas/química , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/química , Vías Biosintéticas , Ingeniería de Proteínas/métodos , Biosíntesis de Proteínas , Trisacáridos/metabolismo , Trisacáridos/biosíntesis , Trisacáridos/química , Extracción Líquido-Líquido/métodos
2.
Appl Environ Microbiol ; 90(10): e0064824, 2024 Oct 23.
Artículo en Inglés | MEDLINE | ID: mdl-39315793

RESUMEN

Human milk oligosaccharides (HMOs) are essentially unaffected by the digestive enzymes of the nursling and are known for their ability to enrich certain microbial species in the infant gut microbiota, in particular bifidobacteria. HMO metabolism has been studied in various bifidobacterial species such as B. breve, B. bifidum, and B. longum subsp. infantis. In the current study, we describe differential growth abilities elicited by twenty-three newly isolated Bifidobacterium pseudocatenulatum strains on particular HMOs, such as 2'-fucosyllactose (2'FL), 3-fucosyllactose (3FL), lacto-N-tetraose (LNT), and lacto-N-neotetraose (LNnT). Through gene-trait matching and comparative genome analysis, we identified genes involved in the degradation of fucosylated HMOs in this strain set, while we employed a transcriptomic approach to facilitate the identification and characterization of genes and associated enzymes involved in LNT metabolism by strain B. pseudocatenulatum MM0196. A total of 252 publicly available genomes of the B. pseudocatenulatum taxon were screened for homologs of the glycosyl hydrolases (GHs) identified here as being required for selected HMO metabolism. From this analysis, it is clear that all members of this species possess homologs of the genes involved in LNT degradation, while genes required for degradation of fucosylated HMOs are variably present.IMPORTANCEOur findings allow a better understanding of the complex interaction between Bifidobacterium and its host and provide a roadmap toward future applications of B. pseudocatenulatum as a probiotic with a focus on infant health. Furthermore, our investigations have generated information on the role of HMOs in shaping the infant gut microbiota, thus also facilitating applications of HMOs in infant nutrition, with potential extension into the mature or adult gut microbiota. Supplementation of HMOs is known to result in the modulation of bacterial communities toward a higher relative abundance of bifidobacteria, which in turn enforces their ability to modulate particular immune functions and strengthen the intestinal barrier. This work may therefore inspire future studies to improve the formulation of neonatal nutritional products, aimed at facilitating the development of a healthy digestive and immune system and reducing the differences in gut microbiota composition observed between breastfed and formula-fed babies or full-term and preterm infants.


Asunto(s)
Bifidobacterium pseudocatenulatum , Leche Humana , Oligosacáridos , Leche Humana/química , Oligosacáridos/metabolismo , Humanos , Bifidobacterium pseudocatenulatum/genética , Bifidobacterium pseudocatenulatum/metabolismo , Genoma Bacteriano , Microbioma Gastrointestinal , Trisacáridos/metabolismo , Bifidobacterium/genética , Bifidobacterium/metabolismo
3.
J Agric Food Chem ; 72(36): 19539-19548, 2024 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-39188079

RESUMEN

Lacto-N-triose II (LNTri II), an important precursor for human milk oligosaccharide (HMOs) synthesis, has garnered significant attention due to its structural features and physiological properties. Composed of galactose (Gal), N-acetylglucosamine (GlcNAc), and glucose (Glc), with the chemical structure GlcNAcß1,3Galß1,4Glc, the distinctive structure of LNTri II confers various physiological functions such as promoting the growth of beneficial bacteria, regulating the infant immune system, and preventing certain gastrointestinal diseases. Extensive research efforts have been dedicated to elucidating efficient enzymatic synthesis pathways for LNTri II production, with particular emphasis on the transglycosylation activity of ß-N-acetylhexosaminidases and the action of ß-1,3-N-acetylglucosaminyltransferases. Additionally, metabolic engineering and cell factory approaches have been explored, harnessing the potential of engineered microbial hosts for the large-scale biosynthesis of LNTri II. This review summarizes the structure, derivatives, physiological effects, and biosynthesis of LNTri II.


Asunto(s)
Bacterias , Bacterias/metabolismo , Bacterias/genética , Humanos , Ingeniería Metabólica , Trisacáridos/metabolismo , Trisacáridos/química , Trisacáridos/biosíntesis , Oligosacáridos/química , Oligosacáridos/metabolismo , Oligosacáridos/biosíntesis , Leche Humana/química , Leche Humana/metabolismo , Animales
4.
Arch Microbiol ; 206(9): 378, 2024 Aug 14.
Artículo en Inglés | MEDLINE | ID: mdl-39143417

RESUMEN

Human milk oligosaccharides (HMOs) have been recognized as gold standard for infant development. 3-Fucosyllactose (3-FL), being one of the Generally Recognized as Safe HMOs, represents a core trisaccharide within the realm of HMOs; however, it has received comparatively less attention in contrast to extensively studied 2'-fucosyllactose. The objective of this review is to comprehensively summarize the health effects of 3-FL, including its impact on gut microbiota proliferation, antimicrobial effects, immune regulation, antiviral protection, and brain maturation. Additionally, the discussion also covers the commercial application and regulatory approval status of 3-FL. Lastly, an organized presentation of large-scale production methods for 3-FL aims to provide a comprehensive guide that highlights current strategies and challenges in optimization.


Asunto(s)
Microbioma Gastrointestinal , Leche Humana , Trisacáridos , Trisacáridos/metabolismo , Humanos , Leche Humana/química , Oligosacáridos/metabolismo , Animales
5.
Biosci Biotechnol Biochem ; 88(11): 1336-1343, 2024 Oct 22.
Artículo en Inglés | MEDLINE | ID: mdl-39217097

RESUMEN

Acetic acid fermentation product made from isomalto-oligosaccharide as the main raw material is composed of isomalto-oligosaccharide and acetic acid. In this paper, we have shown that the fermentation product enhanced the expression of disease resistance genes in rice, and that its main functional component was acetic acid. It has been reported so far that acetic acid enhances the jasmonic acid signaling pathway, while the role of isomalto-oligosaccharide in plant defense signaling remains unclear. In this study, we demonstrated the possibility that isomalto-oligosaccharide shifted part of the jasmonic acid signaling pathway, which is enhanced by acetic acid, to the salicylic acid signaling pathway, which is the other major defense pathway. Furthermore, glucose, a constituent monosaccharide of isomalto-oligosaccharide, and a disaccharide maltose had little effect on the signaling pathway, but a trisaccharide maltotriose tended to have a similar effect to isomalto-oligosaccharide on the defense signaling pathway.


Asunto(s)
Ácido Acético , Ciclopentanos , Fermentación , Oryza , Oxilipinas , Transducción de Señal , Oryza/metabolismo , Oryza/genética , Transducción de Señal/efectos de los fármacos , Ácido Acético/farmacología , Oxilipinas/metabolismo , Oxilipinas/farmacología , Ciclopentanos/farmacología , Ciclopentanos/metabolismo , Trisacáridos/metabolismo , Trisacáridos/farmacología , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Ácido Salicílico/metabolismo , Ácido Salicílico/farmacología , Oligosacáridos/farmacología , Resistencia a la Enfermedad , Maltosa/metabolismo , Glucosa/metabolismo
6.
Appl Environ Microbiol ; 90(7): e0039724, 2024 07 24.
Artículo en Inglés | MEDLINE | ID: mdl-38975758

RESUMEN

Beer brewing is a well-known process that still faces great challenges, such as the total consumption of sugars present in the fermentation media. Lager-style beer, a major worldwide beer type, is elaborated by Saccharomyces pastorianus (Sp) yeast, which must ferment high maltotriose content worts, but its consumption represents a notable problem, especially among Sp strains belonging to group I. Factors, such as fermentation conditions, presence of maltotriose transporters, transporter copy number variation, and genetic regulation variations contribute to this issue. We assess the factors affecting fermentation in two Sp yeast strains: SpIB1, with limited maltotriose uptake, and SpIB2, known for efficient maltotriose transport. Here, SpIB2 transported significantly more maltose (28%) and maltotriose (32%) compared with SpIB1. Furthermore, SpIB2 expressed all MAL transporters (ScMALx1, SeMALx1, ScAGT1, SeAGT1, MTT1, and MPHx) on the first day of fermentation, whereas SpIB1 only exhibited ScMalx1, ScAGT1, and MPH2/3 genes. Some SpIB2 transporters had polymorphic transmembrane domains (TMD) resembling MTT1, accompanied by higher expression of these transporters and its positive regulator genes, such as MAL63. These findings suggest that, in addition to the factors mentioned above, positive regulators of Mal transporters contribute significantly to phenotypic diversity in maltose and maltotriose consumption among the studied lager yeast strains.IMPORTANCEBeer, the third most popular beverage globally with a 90% market share in the alcoholic beverage industry, relies on Saccharomyces pastorianus (Sp) strains for lager beer production. These strains exhibit phenotypic diversity in maltotriose consumption, a crucial process for the acceptable organoleptic profile in lager beer. This diversity ranges from Sp group II strains with a notable maltotriose-consuming ability to Sp group I strains with limited capacity. Our study highlights that differential gene expression of maltose and maltotriose transporters and its upstream trans-elements, such as MAL gene-positive regulators, adds complexity to this variation. This insight can contribute to a more comprehensive analysis needed to the development of controlled and efficient biotechnological processes in the beer brewing industry.


Asunto(s)
Cerveza , Fermentación , Proteínas Fúngicas , Maltosa , Saccharomyces , Trisacáridos , Maltosa/metabolismo , Trisacáridos/metabolismo , Saccharomyces/genética , Saccharomyces/metabolismo , Cerveza/microbiología , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Transporte Biológico , Proteínas de Transporte de Monosacáridos/genética , Proteínas de Transporte de Monosacáridos/metabolismo , Regulación Fúngica de la Expresión Génica
7.
Biosci Biotechnol Biochem ; 88(10): 1180-1187, 2024 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-38992276

RESUMEN

Starch degradation in malted barley produces yeast-fermentable sugars. In this study, we compared the amylolytic enzymes and composition of the malt starch hydrolysates of two barley cultivars, Hokudai 1 (the first cultivar established in Japan) and Kitanohoshi (the currently used cultivar for beer production). Hokudai 1 malt contained lower activity of amylolytic enzymes than Kitanohoshi malt, although these cultivars contained α-amylase AMY2 and ß-amylase Bmy1 as the predominant enzymes. Malt starch hydrolysate of Hokudai 1 contained more limit dextrin and less yeast-fermentable sugars than that of Kitanohoshi. In mixed malt saccharification, a high Hokudai 1 malt ratio increased the limit dextrin levels and decreased the maltotriose and maltose levels. Even though Kitanohoshi malt contained more amylolytic enzymes than Hokudai 1 malt, addition of Kitanohoshi extract containing the amylolytic enzymes did not enhance malt starch degradation of Hokudai 1. Hokudai 1 malt starch was less degradable than Kitanohoshi malt starch.


Asunto(s)
Cerveza , Dextrinas , Hordeum , Maltosa , Almidón , alfa-Amilasas , beta-Amilasa , Hordeum/química , Hordeum/metabolismo , Hordeum/enzimología , Almidón/metabolismo , Cerveza/análisis , alfa-Amilasas/metabolismo , Hidrólisis , Maltosa/metabolismo , beta-Amilasa/metabolismo , Japón , Dextrinas/metabolismo , Trisacáridos/metabolismo , Fermentación
8.
World J Microbiol Biotechnol ; 40(9): 261, 2024 Jul 08.
Artículo en Inglés | MEDLINE | ID: mdl-38972914

RESUMEN

The fecal microbiota of two healthy adults was cultivated in a medium containing commercial fructooligosaccharides [FOS; 1-kestose (GF2), nystose (GF3), and 1F-fructofuranosylnystose (GF4)]. Initially, the proportions of lactobacilli in the two feces samples were only 0.42% and 0.17%; however, they significantly increased to 7.2% and 4.8%, respectively, after cultivation on FOS. Most FOS-utilizing isolates could utilize only GF2; however, Lacticaseibacillus paracasei strain Lp02 could fully consume GF3 and GF4 too. The FOS operon (fosRABCDXE) was present in Lc. paracasei Lp02 and another Lc. paracasei strain, KCTC 3510T, but fosE was only partially present in the non-FOS-degrading strain KCTC 3510T. In addition, the top six upregulated genes in the presence of FOS were fosABCDXE, particularly fosE. FosE is a ß-fructosidase that hydrolyzes both sucrose and all three FOS. Finally, a genome-based analysis suggested that fosE is mainly observed in Lc. paracasei, and only 13.5% (61/452) of their reported genomes were confirmed to include it. In conclusion, FosE allows the utilization of FOS, including GF3 and GF4 as well as GF2, by some Lc. paracasei strains, suggesting that this species plays a pivotal role in FOS utilization in the human gut.


Asunto(s)
Heces , Microbioma Gastrointestinal , Lacticaseibacillus paracasei , Oligosacáridos , beta-Fructofuranosidasa , Humanos , Oligosacáridos/metabolismo , Heces/microbiología , Lacticaseibacillus paracasei/metabolismo , Lacticaseibacillus paracasei/genética , beta-Fructofuranosidasa/metabolismo , beta-Fructofuranosidasa/genética , Adulto , Operón , Trisacáridos/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo
10.
ACS Synth Biol ; 13(6): 1866-1878, 2024 Jun 21.
Artículo en Inglés | MEDLINE | ID: mdl-38836566

RESUMEN

3-Fucosyllactose (3-FL) is an important fucosylated human milk oligosaccharide (HMO) with biological functions such as promoting immunity and brain development. Therefore, the construction of microbial cell factories is a promising approach to synthesizing 3-FL from renewable feedstocks. In this study, a combinatorial engineering strategy was used to achieve efficient de novo 3-FL production in Escherichia coli. α-1,3-Fucosyltransferase (futM2) from Bacteroides gallinaceum was introduced into E. coli and optimized to create a 3-FL-producing chassis strain. Subsequently, the 3-FL titer increased to 5.2 g/L by improving the utilization of the precursor lactose and down-regulating the endogenous competitive pathways. Furthermore, a synthetic membraneless organelle system based on intrinsically disordered proteins was designed to spatially regulate the pathway enzymes, producing 7.3 g/L 3-FL. The supply of the cofactors NADPH and GTP was also enhanced, after which the 3-FL titer of engineered strain E26 was improved to 8.2 g/L in a shake flask and 10.8 g/L in a 3 L fermenter. In this study, we developed a valuable approach for constructing an efficient 3-FL-producing cell factory and provided a versatile workflow for other chassis cells and HMOs.


Asunto(s)
Escherichia coli , Fucosiltransferasas , Ingeniería Metabólica , Trisacáridos , Escherichia coli/genética , Escherichia coli/metabolismo , Trisacáridos/metabolismo , Trisacáridos/biosíntesis , Ingeniería Metabólica/métodos , Fucosiltransferasas/genética , Fucosiltransferasas/metabolismo , Lactosa/metabolismo , Bacteroides/genética , Bacteroides/metabolismo , Fermentación , Oligosacáridos
11.
J Agric Food Chem ; 72(25): 14191-14198, 2024 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-38878091

RESUMEN

3-Fucosyllactose (3-FL), an important fucosylated human milk oligosaccharide in breast milk, offers numerous health benefits to infants. Previously, we metabolically engineered Escherichia coli BL21(DE3) for the in vivo biosynthesis of 3-FL. In this study, we initially optimized culture conditions to double 3-FL production. Competing pathway genes involved in in vivo guanosine 5'-diphosphate-fucose biosynthesis were subsequently inactivated to redirect fluxes toward 3-FL biosynthesis. Next, three promising transporters were evaluated using plasmid-based or chromosomally integrated expression to maximize extracellular 3-FL production. Additionally, through analysis of α1,3-fucosyltransferase (FutM2) structure, we identified Q126 residues as a highly mutable residue in the active site. After site-saturation mutation, the best-performing mutant, FutM2-Q126A, was obtained. Structural analysis and molecular dynamics simulations revealed that small residue replacement positively influenced helical structure generation. Finally, the best strain BD3-A produced 6.91 and 52.1 g/L of 3-FL in a shake-flask and fed-batch cultivations, respectively, highlighting its potential for large-scale industrial applications.


Asunto(s)
Escherichia coli , Fucosiltransferasas , Ingeniería Metabólica , Trisacáridos , Escherichia coli/genética , Escherichia coli/metabolismo , Trisacáridos/metabolismo , Trisacáridos/biosíntesis , Trisacáridos/química , Fucosiltransferasas/genética , Fucosiltransferasas/metabolismo , Humanos , Oligosacáridos
12.
Gut ; 73(10): 1632-1649, 2024 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-38740509

RESUMEN

OBJECTIVE: To decipher the mechanisms by which the major human milk oligosaccharide (HMO), 2'-fucosyllactose (2'FL), can affect body weight and fat mass gain on high-fat diet (HFD) feeding in mice. We wanted to elucidate whether 2'FL metabolic effects are linked with changes in intestinal mucus production and secretion, mucin glycosylation and degradation, as well as with the modulation of the gut microbiota, faecal proteome and endocannabinoid (eCB) system. RESULTS: 2'FL supplementation reduced HFD-induced obesity and glucose intolerance. These effects were accompanied by several changes in the intestinal mucus layer, including mucus production and composition, and gene expression of secreted and transmembrane mucins, glycosyltransferases and genes involved in mucus secretion. In addition, 2'FL increased bacterial glycosyl hydrolases involved in mucin glycan degradation. These changes were linked to a significant increase and predominance of bacterial genera Akkermansia and Bacteroides, different faecal proteome profile (with an upregulation of proteins involved in carbon, amino acids and fat metabolism and a downregulation of proteins involved in protein digestion and absorption) and, finally, to changes in the eCB system. We also investigated faecal proteomes from lean and obese humans and found similar changes observed comparing lean and obese mice. CONCLUSION: Our results show that the HMO 2'FL influences host metabolism by modulating the mucus layer, gut microbiota and eCB system and propose the mucus layer as a new potential target for the prevention of obesity and related disorders.


Asunto(s)
Dieta Alta en Grasa , Heces , Microbioma Gastrointestinal , Obesidad , Trisacáridos , Animales , Dieta Alta en Grasa/efectos adversos , Obesidad/metabolismo , Obesidad/microbiología , Obesidad/prevención & control , Microbioma Gastrointestinal/efectos de los fármacos , Trisacáridos/metabolismo , Ratones , Heces/microbiología , Heces/química , Humanos , Leche Humana/metabolismo , Leche Humana/química , Mucosa Intestinal/metabolismo , Proteoma/metabolismo , Proteoma/análisis , Moco/metabolismo , Masculino , Ratones Endogámicos C57BL , Mucinas/metabolismo
13.
Appl Microbiol Biotechnol ; 108(1): 338, 2024 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-38771321

RESUMEN

Fucosyl-oligosaccharides (FUS) provide many health benefits to breastfed infants, but they are almost completely absent from bovine milk, which is the basis of infant formula. Therefore, there is a growing interest in the development of enzymatic transfucosylation strategies for the production of FUS. In this work, the α-L-fucosidases Fuc2358 and Fuc5372, previously isolated from the intestinal bacterial metagenome of breastfed infants, were used to synthesize fucosyllactose (FL) by transfucosylation reactions using p-nitrophenyl-α-L-fucopyranoside (pNP-Fuc) as donor and lactose as acceptor. Fuc2358 efficiently synthesized the major fucosylated human milk oligosaccharide (HMO) 2'-fucosyllactose (2'FL) with a 35% yield. Fuc2358 also produced the non-HMO FL isomer 3'-fucosyllactose (3'FL) and traces of non-reducing 1-fucosyllactose (1FL). Fuc5372 showed a lower transfucosylation activity compared to Fuc2358, producing several FL isomers, including 2'FL, 3'FL, and 1FL, with a higher proportion of 3'FL. Site-directed mutagenesis using rational design was performed to increase FUS yields in both α-L-fucosidases, based on structural models and sequence identity analysis. Mutants Fuc2358-F184H, Fuc2358-K286R, and Fuc5372-R230K showed a significantly higher ratio between 2'FL yields and hydrolyzed pNP-Fuc than their respective wild-type enzymes after 4 h of transfucosylation. The results with the Fuc2358-F184W and Fuc5372-W151F mutants showed that the residues F184 of Fuc2358 and W151 of Fuc5372 could have an effect on transfucosylation regioselectivity. Interestingly, phenylalanine increases the selectivity for α-1,2 linkages and tryptophan for α-1,3 linkages. These results give insight into the functionality of the active site amino acids in the transfucosylation activity of the GH29 α-L-fucosidases Fuc2358 and Fuc5372. KEY POINTS: Two α-L-fucosidases from infant gut bacterial microbiomes can fucosylate glycans Transfucosylation efficacy improved by tailored point-mutations in the active site F184 of Fuc2358 and W151 of Fuc5372 seem to steer transglycosylation regioselectivity.


Asunto(s)
Microbioma Gastrointestinal , Metagenoma , Leche Humana , Trisacáridos , alfa-L-Fucosidasa , Humanos , Lactante , alfa-L-Fucosidasa/genética , alfa-L-Fucosidasa/metabolismo , Fucosa/metabolismo , Lactosa/metabolismo , Leche Humana/química , Mutagénesis Sitio-Dirigida , Oligosacáridos/metabolismo , Trisacáridos/metabolismo
14.
Bioresour Technol ; 402: 130798, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38705212

RESUMEN

Biosensor-based high-throughput screening is efficient for improving industrial microorganisms. There is a severe shortage of human milk oligosaccharides (HMOs) biosensors. This study established a 3-fucosyllactose (3-FL, a kind of HMOs) whole-cell biosensor by coupling cell growth with production. To construct and optimize the biosensor, an Escherichia coli 3-FL producer was engineered by deleting the manA, yihS and manX genes, directing the mannose flux solely to 3-FL synthesis. Then, an α-L-fucosidase was introduced to hydrolyze 3-FL to fucose which was used as the only carbon source for cell growth. Using the biosensor, the 3-FL production of a screened mutant was improved by 25 % to 42.05 ± 1.28 g/L. The productivity reached 1.17 g/L/h, the highest level reported by now. The csrB mutant obtained should be a new clue for the 3-FL overproduction mechanism. In summary, this study provided a novel approach to construct HMOs biosensors for strain improvement.


Asunto(s)
Técnicas Biosensibles , Escherichia coli , Trisacáridos , Técnicas Biosensibles/métodos , Escherichia coli/metabolismo , Escherichia coli/genética , Trisacáridos/metabolismo , Ensayos Analíticos de Alto Rendimiento/métodos , Mutación , Humanos , Leche Humana/química , alfa-L-Fucosidasa/metabolismo , alfa-L-Fucosidasa/genética , Oligosacáridos
15.
FEBS J ; 291(14): 3267-3282, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38661728

RESUMEN

Glycoside hydrolase family 97 (GH97) comprises enzymes like anomer-inverting α-glucoside hydrolases (i.e., glucoamylase) and anomer-retaining α-galactosidases. In a soil bacterium, Flavobacterium johnsoniae, we previously identified a GH97 enzyme (FjGH97A) within the branched dextran utilization locus. It functions as an α-glucoside hydrolase, targeting α-(1→6)-glucosidic linkages in dextran and isomaltooligosaccharides (i.e., glucodextranase). FjGH97A exhibits a preference for α-(1→6)-glucoside linkages over α-(1→4)-linkages, while Bacteroides thetaiotaomicron glucoamylase SusB (with 69% sequence identity), which is involved in the starch utilization system, exhibits the highest specificity for α-(1→4)-glucosidic linkages. Here, we examined the crystal structures of FjGH97A in complexes with glucose, panose, or isomaltotriose, and analyzed the substrate preferences of its mutants to identify the amino acid residues that determine the substrate specificity for α-(1→4)- and α-(1→6)-glucosidic linkages. The overall structure of FjGH97A resembles other GH97 enzymes, with conserved catalytic residues similar to anomer-inverting GH97 enzymes. A comparison of active sites between FjGH97A and SusB revealed differences in amino acid residues at subsites +1 and +2 (specifically Ala195 and Ile378 in FjGH97A). Among the three mutants (A195S, I378F, and A195S-I378F), A195S and A195S-I378F exhibited increased activity toward α-(1→4)-glucoside bonds compared to α-(1→6)-glucoside bonds. This suggests that Ala195, located on the Gly184-Thr203 loop (named loop-N) conserved within the GH97 subgroup, including FjGH97A and SusB, holds significance in determining linkage specificity. The conservation of alanine in the active site of the GH97 enzymes, within the same gene cluster as the putative dextranase, indicates its crucial role in determining the specificity for α-(1→6)-glucoside linkage.


Asunto(s)
Flavobacterium , Glicósido Hidrolasas , Especificidad por Sustrato , Flavobacterium/enzimología , Flavobacterium/genética , Cristalografía por Rayos X , Glicósido Hidrolasas/química , Glicósido Hidrolasas/genética , Glicósido Hidrolasas/metabolismo , Glucosa/metabolismo , Glucosa/química , Modelos Moleculares , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Dominio Catalítico , Dextranos/química , Dextranos/metabolismo , Secuencia de Aminoácidos , Trisacáridos/metabolismo , Trisacáridos/química , Glucanos
16.
J Biotechnol ; 387: 49-57, 2024 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-38556215

RESUMEN

2'-Fucosyllactose (2'-FL), one of the major human milk oligosaccharides, was produced in several engineered microorganisms. However, the low solubility of α-1,2-fucosyltransferase (α1,2-FucT) often becomes a bottleneck to produce maximum amount of 2'-FL in the microorganisms. To overcome this solubility issue, the following studies were conducted to improve the soluble expression of α1,2-FucT. Initially, hydrophobic amino acids in the hydrophilic region of the 6 α-helices were mutated, adhering to the α-helix rule. Subsequently, gfp11 was fused to the C-terminal of futC gene encoding α1,2-FucT (FutC), enabling selection of high-fluorescence mutants through split-GFP. Each mutant library was screened via fluorescence activated cell sorting (FACS) to separate soluble mutants for high-throughput screening. As a result, L80C single mutant and A121D/P124A/L125R triple mutant were found, and a combined quadruple mutant was created. Furthermore, we combined mutations of conserved sequences (Q150H/C151R/Q239S) of FutC, which showed positive effects in the previous studies from our lab, with the above quadruple mutants (L80C/A121D/P124A/L125R). The resulting strain produced approximately 3.4-fold higher 2'-FL titer than that of the wild-type, suggesting that the conserved sequence mutations are an independent subset of the mutations that further improve the solubility of the target protein acquired by random mutagenesis using split-GFP.


Asunto(s)
Escherichia coli , Citometría de Flujo , Fucosiltransferasas , Proteínas Fluorescentes Verdes , Fucosiltransferasas/genética , Fucosiltransferasas/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Solubilidad , Trisacáridos/metabolismo , Galactósido 2-alfa-L-Fucosiltransferasa , Mutación , Ensayos Analíticos de Alto Rendimiento/métodos , Humanos , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo
17.
Chem Res Toxicol ; 37(4): 590-599, 2024 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-38488606

RESUMEN

Caenorhabditis elegans is a useful model organism to study the xenobiotic detoxification pathways of various natural and synthetic toxins, but the mechanisms of phase II detoxification are understudied. 1-Hydroxyphenazine (1-HP), a toxin produced by the bacterium Pseudomonas aeruginosa, kills C. elegans. We previously showed that C. elegans detoxifies 1-HP by adding one, two, or three glucose molecules in N2 worms. Our current study evaluates the roles that some UDP-glycosyltransferase (ugt) genes play in 1-HP detoxification. We show that ugt-23 and ugt-49 knockout mutants are more sensitive to 1-HP than reference strains N2 or PD1074. Our data also show that ugt-23 knockout mutants produce reduced amounts of the trisaccharide sugars, while the ugt-49 knockout mutants produce reduced amounts of all 1-HP derivatives except for the glucopyranosyl product compared to the reference strains. We characterized the structure of the trisaccharide sugar phenazines made by C. elegans and showed that one of the sugar modifications contains an N-acetylglucosamine (GlcNAc) in place of glucose. This implies broad specificity regarding UGT function and the role of genes other than ogt-1 in adding GlcNAc, at least in small-molecule detoxification.


Asunto(s)
Caenorhabditis elegans , Glicosiltransferasas , Animales , Glicosilación , Caenorhabditis elegans/genética , Caenorhabditis elegans/metabolismo , Glicosiltransferasas/genética , Glicosiltransferasas/metabolismo , Fenazinas/metabolismo , Uridina Difosfato/metabolismo , Glucosa/metabolismo , Azúcares/metabolismo , Trisacáridos/metabolismo
18.
J Agric Food Chem ; 72(8): 4367-4375, 2024 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-38374607

RESUMEN

Difucosyllactose (DFL) is an important component of human milk oligosaccharides (HMOs) and has significant benefits for the growth and development of infants. So far, a few microbial cell factories have been constructed for the production of DFL, which still have problems of low production and high cost. Herein, a high-level de novo pathway DFL-producing strain was constructed by multistep optimization strategies in Escherichia coli BL21star(DE3). We first efficiently synthesized the intermediate 2'-fucosyllactose (2'-FL) in E. coli BL21star(DE3) by the advisable stepwise strategy. The truncated α-1,3/4-fucosyltransferase (Hp3/4FT) was then introduced into the engineered strain to achieve de novo biosynthesis of DFL. ATP-dependent protease (Lon) and GDP-mannose hydrolase (NudK) were deleted, and mannose-6-phosphate isomerase (ManA) was overexpressed to improve GDP-l-fucose accumulation. The regulator RcsA was overexpressed to fine-tune the expression level of pathway genes, thereby increasing the synthesis of DFL. The final strain produced 6.19 g/L of DFL in the shake flask and 33.45 g/L of DFL in the 5 L fermenter, which were the highest reported titers so far. This study provides a more economical, sustainable, and effective strategy to produce the fucosylated human milk oligosaccharides (HMOs).


Asunto(s)
Escherichia coli , Fucosa , Humanos , Escherichia coli/genética , Escherichia coli/metabolismo , Fucosa/metabolismo , Trisacáridos/metabolismo , Guanosina Difosfato Fucosa , Oligosacáridos/metabolismo , Leche Humana/metabolismo , Ingeniería Metabólica
19.
J Agric Food Chem ; 72(2): 1178-1189, 2024 Jan 17.
Artículo en Inglés | MEDLINE | ID: mdl-38183288

RESUMEN

3-Fucosyllactose (3-FL) is an important oligosaccharide and nutrient in breast milk that can be synthesized in microbial cells by α-1,3-fucosyltransferase (α-1,3-FucT) using guanosine 5'-diphosphate (GDP)-l-fucose and lactose as substrates. However, the catalytic efficiency of known α-1,3-FucTs from various sources was limited due to their low solubility. To enhance the microbial production of 3-FL, the efficiencies of α-1,3-FucTs were evaluated and in Bacillus subtilis (B. subtilis) chassis cells that had been endowed with a heterologous synthetic pathway for GDP-l-fucose, revealing that the activity of FucTa from Helicobacter pylori (H. pylori) was higher than that of any of other reported homologues. To further improve the catalytic performance of FucTa, a rational design approach was employed, involving intracellular evaluation of the mutational sites of M32 obtained through directed evolution, analysis of the ligand binding site diversity, and protein structure simulation. Among the obtained variants, the FucTa-Y218 K variant exhibited the highest 3-FL yield, reaching 7.55 g/L in the shake flask growth experiment, which was 3.48-fold higher than that achieved by the wild-type enzyme. Subsequent fermentation optimization in a 5 L bioreactor resulted in a remarkable 3-FL production of 36.98 g/L, highlighting the great prospects of the designed enzyme and the strains for industrial applications.


Asunto(s)
Bacillus subtilis , Fucosiltransferasas , Trisacáridos , Humanos , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Trisacáridos/metabolismo , Fucosa/metabolismo , Escherichia coli/metabolismo , Oligosacáridos/metabolismo
20.
Biotechnol J ; 19(1): e2300461, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-37968827

RESUMEN

2'-Fucosyllactose (2'-FL) which is well-known human milk oligosaccharide was biotechnologically synthesized using engineered Corynebacterium glutamicum, a GRAS microbial workhorse. By construction of the complete de novo pathway for GDP-L-fucose supply and heterologous expression of Escherichia coli lactose permease and Helicobacter pylori α-1,2-fucosyltransferase, bioengineered C. glutamicum BCGW_TL successfully biosynthesized 0.25 g L-1 2'-FL from glucose. The additional genetic perturbations including the expression of a putative 2'-FL exporter and disruption of the chromosomal pfkA gene allowed C. glutamicum BCGW_cTTLEΔP to produce 2.5 g L-1 2'-FL batchwise. Finally, optimized fed-batch cultivation of the BCGW_cTTLEΔP using glucose, fructose, and lactose resulted in 21.5 g L-1 2'-FL production with a productivity of 0.12 g L-1 •h, which were more than 3.3 times higher value relative to the batch culture of the BCGW_TL. Conclusively, it would be a groundwork to adopt C. glutamicum for biotechnological production of other food additives including human milk oligosaccharides.


Asunto(s)
Corynebacterium glutamicum , Humanos , Corynebacterium glutamicum/genética , Corynebacterium glutamicum/metabolismo , Trisacáridos/genética , Trisacáridos/metabolismo , Oligosacáridos/metabolismo , Escherichia coli/genética , Guanosina Difosfato Fucosa/genética , Guanosina Difosfato Fucosa/metabolismo , Glucosa/metabolismo , Ingeniería Metabólica
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