Changes in the Invasion Rate of Prosopis juliflora and Its Impact on Depletion of Groundwater in the Northern Part of the United Arab Emirates.

Prosopis species were introduced to the United Arab Emirates (UAE) region for desert greening. However, the species now pose a great threat to the native plant diversity. This study used high-resolution satellite imagery (1990-2019) to understand the history and current distribution of Prosopis species and their impact on fresh groundwater. The results show that the Prosopis invasion in the study area reached its maximum expansion rate in 2019 and covered an area of about 16 km2 compared to 0.2 km2 in 1990. The areas near Sharjah Airport, Umm Fannan, and Al Talla, located at a lower elevation of the sand dune area, are heavily invaded. Prosopis groundwater requirement derived using evapotranspiration shows that groundwater consumption has changed drastically after 2010 and consumed about 22.22 million m3 of groundwater in 2019, which is about a 7372% increase in groundwater consumption from the year 1990 to 2019. The results can be useful for setting up a management plan for the sustainable use of this species in the UAE region in particular and other similar countries in the arid land regions that are suffering from freshwater depletion because of Prosopis invasion.

uhrf1 and dnmt1 Loss Induces an Immune Response in Zebrafish Livers Due to Viral Mimicry by Transposable Elements.

Activation of transposable elements (TEs) can cause cellular damage. Cytoplasmic nucleic acid sensing pathways evolved to detect pathogens, but can also serve to cull cells with inappropriate TE activation as TEs can be viral mimetics. Epigenetic silencing of TEs is mediated in part by DNA methylation, but it is not clear if TE activation or the immune system contribute to the cellular damage caused by loss of DNA methylation. Here, we provide mechanistic insight into the observation of an activated interferon response in the liver of zebrafish larvae with deletion in critical components of the DNA methylation machinery, uhrf1 and dnmt1. We focus on dissecting the relationship between DNA methylation, TE activation and induction of an immune response through cytoplasmic DNA and double stranded RNA sensing pathways and identify tnfa as a mediator of cell death in the liver of these mutants. Integrated RNAseq and methylome analysis identified LTR transposons as the most upregulated in these mutants and also the most methylated in control larvae, indicating a direct role of DNA methylation in suppressing this TE subclass. RNAseq analysis from these same samples revealed expression signatures of a type-I interferon response and of tnfa activation, mimicking the pattern of gene expression in virally infected cells. CRISPR/Cas9 mediated depletion of the cellular antiviral sensors sting and mavs reduced expression of interferon response genes and tnfa depletion dramatically reduced cell death in uhrf1 mutant livers. This suggests that the antiviral response induced by DNA hypomethylation and TE activation in the liver is mediated by the signaling pathways activated by both cytoplasmic double stranded RNA and DNA and that tnfa mediates cell death as a potential mechanism to eliminate these damaged cells.

Hapke-based computational method to enable unmixing of hyperspectral data of common salts.

Environmental scientists are currently assessing the ability of hyper-spectral remote sensing to detect, identify, and analyze natural components, including minerals, rocks, vegetation and soil. This paper discusses the use of a nonlinear reflectance model to distinguish multicomponent particulate mixtures. Analysis of the data presented in this paper shows that, although the identity of the components can often be found from diagnostic wavelengths of absorption bands, the quantitative abundance determination requires knowledge of the complex refractive indices and average particle scattering albedo, phase function and size. The present study developed a method for spectrally unmixing halite and gypsum combinations. Using the known refractive indexes of the components, and with the assistance of Hapke theory and Legendre polynomials, the authors develop a method to find the component particle sizes and mixing coefficients for blends of halite and gypsum. Material factors in the method include phase function parameters, bidirectional reflectance, imaginary index, grain sizes, and iterative polynomial fitting. The obtained Hapke parameters from the best-fit approach were comparable to those reported in the literature. After the optical constants (n, the so-called real index of refraction and k, the coefficient of the imaginary index of refraction) are derived, and the geometric parameters are determined, single-scattering albedo (or ω) can be calculated and spectral unmixing becomes possible.