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1.
Phys Rev E ; 110(1-1): 014607, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-39160927

RESUMO

Collections of persistently moving active particles are an example of a nonequilibrium heat bath. One way to study the nature of nonequilibrium fluctuations in such systems is to follow the dynamics of an embedded probe particle. With this aim, we study the dynamics of an anisotropic inclusion embedded in a bath of active particles. By studying various statistical correlation functions of the dynamics, we show that the emergent motility of this inclusion depends on its shape as well as the properties of the active bath. We demonstrate that both the decorrelation time of the net force on the inclusion and the dwell time of bath particles in a geometrical trap on the inclusion have a nonmonotonic dependence on its shape. We also find that the motility of the inclusion is optimal when the volume fraction of the active bath is close to the value for the onset of motility induced phase separation.

2.
Phys Rev E ; 109(6-1): 064122, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-39020889

RESUMO

We elucidate the universal spatiotemporal scaling properties of the time-dependent correlation functions in a class of two-component one-dimensional (1D) driven diffusive system that consists of two coupled asymmetric exclusion processes. By using a perturbative renormalization group framework, we show that the relevant scaling exponents have values same as those for the 1D Kardar-Parisi-Zhang (KPZ) equation. We connect these universal scaling exponents with the symmetries of the model equations. We thus establish that these models belong to the 1D KPZ universality class.

3.
J Cell Biol ; 223(3)2024 03 04.
Artigo em Inglês | MEDLINE | ID: mdl-38240798

RESUMO

Cytoplasmic dynein 1 (dynein) is the primary minus end-directed motor protein in most eukaryotic cells. Dynein remains in an inactive conformation until the formation of a tripartite complex comprising dynein, its regulator dynactin, and a cargo adaptor. How this process of dynein activation occurs is unclear since it entails the formation of a three-protein complex inside the crowded environs of a cell. Here, we employed live-cell, single-molecule imaging to visualize and track fluorescently tagged dynein. First, we observed that only ∼30% of dynein molecules that bound to the microtubule (MT) engaged in minus end-directed movement, and that too for a short duration of ∼0.6 s. Next, using high-resolution imaging in live and fixed cells and using correlative light and electron microscopy, we discovered that dynactin and endosomal cargo remained in proximity to each other and to MTs. We then employed two-color imaging to visualize cargo movement effected by single motor binding. Finally, we performed long-term imaging to show that short movements are sufficient to drive cargo to the perinuclear region of the cell. Taken together, we discovered a search mechanism that is facilitated by dynein's frequent MT binding-unbinding kinetics: (i) in a futile event when dynein does not encounter cargo anchored in proximity to the MT, dynein dissociates and diffuses into the cytoplasm, (ii) when dynein encounters cargo and dynactin upon MT binding, it moves cargo in a short run. Several of these short runs are undertaken in succession for long-range directed movement. In conclusion, we demonstrate that dynein activation and cargo capture are coupled in a step that relies on the reduction of dimensionality to enable minus end-directed transport in cellulo and that complex cargo behavior emerges from stochastic motor-cargo interactions.


Assuntos
Dineínas do Citoplasma , Microtúbulos , Imagem Individual de Molécula , Dineínas do Citoplasma/genética , Dineínas do Citoplasma/metabolismo , Complexo Dinactina/metabolismo , Endossomos/metabolismo , Microtúbulos/metabolismo
4.
Phys Rev E ; 105(4-1): 044605, 2022 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-35590579

RESUMO

We show that two active particles can form a bound state by coupling to a driven nonequilibrium environment. We specifically investigate the case of two mutually noninteracting run-and-tumble probes moving on a ring, each in short-range interaction with driven colloids. Under conditions of timescale separation, these active probes become trapped in bound states. In fact, the bound state appears at high enough persistence (low effective temperature). From the perspective of a comoving frame, where colloids are in thermal equilibrium and the probes are active and driven, an appealing analogy appears with Cooper pairing, as electrons can be viewed as run-and-tumble particles in a pilot-wave picture.

5.
Soft Matter ; 16(30): 7077-7087, 2020 Aug 14.
Artigo em Inglês | MEDLINE | ID: mdl-32657314

RESUMO

We study the single-file dynamics of three classes of active particles: run-and-tumble particles, active Brownian particles and active Ornstein-Uhlenbeck particles. At high activity values, the particles, interacting via purely repulsive and short-ranged forces, aggregate into several motile and dynamical clusters of comparable size, and do not display bulk phase-segregation. In this dynamical steady-state, we find that the cluster size distribution of these aggregates is a scaled function of the density and activity parameters across the three models of active particles with the same scaling function. The velocity distribution of these motile clusters is non-Gaussian. We show that the effective dynamics of these clusters can explain the observed emergent scaling of the mean-squared displacement of tagged particles for all the three models with identical scaling exponents and functions. Concomitant with the clustering seen at high activities, we observe that the static density correlation function displays rich structures, including multiple peaks that are reminiscent of particle clustering induced by effective attractive interactions, while the dynamical variant shows non-diffusive scaling. Our study reveals a universal scaling behavior in the single-file dynamics of interacting active particles.

6.
Soft Matter ; 14(29): 6137-6145, 2018 Jul 25.
Artigo em Inglês | MEDLINE | ID: mdl-29999083

RESUMO

We study binary mixtures of small active and big passive athermal particles interacting via soft repulsive forces on a frictional substrate. Athermal self propelled particles are known to phase separate into a dense aggregate and a dilute gas-like phase at fairly low packing fractions. Known as motility induced phase separation, this phenomenon governs the behaviour of binary mixtures for small to intermediate size ratios of the particle species. An effective attraction between passive particles, due to the surrounding active medium, leads to true phase separation for large size ratios and volume fractions of active particles. The effective interaction between active and passive particles can be attractive or repulsive at short range depending on the size ratio and volume fractions of the particles. This affects the clustering of passive particles. We find three distinct phases based on the spatial distribution of passive particles. The cluster size distribution of passive particles decays exponentially in the homogeneous phase. It decays as a power law with an exponential cutoff in the clustered phase and tends to a power law as the system approaches the transition to the phase separated state. We present a phase diagram in the plane defined by the size ratio and volume fraction of passive particles.

7.
Phys Rev E ; 95(5-1): 052115, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-28618559

RESUMO

We study the dynamical response to small distortions of a lattice about its uniform state, drifting through a dissipative medium due to an external force, and show, analytically and numerically, that the fluctuations, both transverse and longitudinal to the direction of the drift, exhibit spatiotemporal scaling belonging to the Kardar-Parisi-Zhang universality class. Further, we predict that a colloidal crystal drifting in a constant electric field is linearly stable against distortions and the distortions propagate as underdamped waves.

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