Orientation toward humans predicts cognitive performance in orang-utans.

Non-human animals sometimes show marked intraspecific variation in their cognitive abilities that may reflect variation in external inputs and experience during the developmental period. We examined variation in exploration and cognitive performance on a problem-solving task in a large sample of captive orang-utans (Pongo abelii &P. pygmaeus, N = 103) that had experienced different rearing and housing conditions during ontogeny, including human exposure. In addition to measuring exploration and cognitive performance, we also conducted a set of assays of the subjects' psychological orientation, including reactions towards an unfamiliar human, summarized in the human orientation index (HOI), and towards novel food and objects. Using generalized linear mixed models we found that the HOI, rather than rearing background, best predicted both exploration and problem-solving success. Our results suggest a cascade of processes: human orientation was accompanied by a change in motivation towards problem-solving, expressed in reduced neophobia and increased exploration variety, which led to greater experience, and thus eventually to higher performance in the task. We propose that different experiences with humans caused individuals to vary in curiosity and understanding of the physical problem-solving task. We discuss the implications of these findings for comparative studies of cognitive ability.

Effective Characterisation of the Complete Orang-Utan Mitochondrial DNA Control Region, in the Face of Persistent Focus in Many Taxa on Shorter Hypervariable Regions.

The hypervariable region I (HVRI) is persistently used to discern haplotypes, to distinguish geographic subpopulations, and to infer taxonomy in a range of organisms. Numerous studies have highlighted greater heterogeneity elsewhere in the mitochondrial DNA control region, however-particularly, in some species, in other understudied hypervariable regions. To assess the abundance and utility of such potential variations in orang-utans, we characterised 36 complete control-region haplotypes, of which 13 were of Sumatran and 23 of Bornean maternal ancestry, and compared polymorphisms within these and within shorter HVRI segments predominantly analysed in prior phylogenetic studies of Sumatran (~385 bp) and Bornean (~323 bp) orang-utans. We amplified the complete control region in a single PCR that proved successful even with highly degraded, non-invasive samples. By using species-specific primers to produce a single large amplicon (~1600 bp) comprising flanking coding regions, our method also serves to better avoid amplification of nuclear mitochondrial insertions (numts). We found the number, length and position of hypervariable regions is inconsistent between orang-utan species, and that prior definitions of the HVRI were haphazard. Polymorphisms occurring outside the predominantly analysed segments were phylogeographically informative in isolation, and could be used to assign haplotypes to comparable clades concordant with geographic subpopulations. The predominantly analysed segments could discern only up to 76% of all haplotypes, highlighting the forensic utility of complete control-region sequences. In the face of declining sequencing costs and our proven application to poor-quality DNA extracts, we see no reason to ever amplify only specific 'hypervariable regions' in any taxa, particularly as their lengths and positions are inconsistent and cannot be reliably defined-yet this strategy predominates widely. Given their greater utility and consistency, we instead advocate analysis of complete control-region sequences in future studies, where any shorter segment might otherwise have proven the region of choice.

Reintroduction of confiscated and displaced mammals risks outbreeding and introgression in natural populations, as evidenced by orang-utans of divergent subspecies.

Confiscated and displaced mammals are often taken to sanctuaries, where the explicit goal may be reintroduction to the wild. By inadvertently collecting animals from different source populations, however, such efforts risk reintroducing individuals that have not been in genetic contact for significant periods of time. Using genetic analyses and 44 years of data from Camp Leakey, an orang-utan rehabilitation site on Borneo, we determined the minimum extent to which orang-utans representing non-native, geographically and reproductively isolated taxa were reintroduced into the surrounding wild population. We found two reintroduced females were from a non-native subspecies, and have since produced at least 22 hybridized and introgressed descendants to date, of which at least 15 are living. Given that Bornean orang-utan subspecies are thought to have diverged from a common ancestor around 176,000 years ago, with marked differentiation over the last 80,000 years, we highlight the need for further evaluation of the effects of hybridizing orang-utans of different taxa--particularly in light of the ~1500 displaced orang-utans awaiting urgent reintroduction. As endangered mammals are increasing in number in sanctuaries worldwide, we stress the need for re-examination of historical reintroductions, to assess the extent and effects of de facto translocations in the past.

The origin of malarial parasites in orangutans.

BACKGROUND: Recent findings of Plasmodium in African apes have changed our perspectives on the evolution of malarial parasites in hominids. However, phylogenetic analyses of primate malarias are still missing information from Southeast Asian apes. In this study, we report molecular data for a malaria parasite lineage found in orangutans. METHODOLOGY/PRINCIPAL FINDINGS: We screened twenty-four blood samples from Pongo pygmaeus (Kalimantan, Indonesia) for Plasmodium parasites by PCR. For all the malaria positive orangutan samples, parasite mitochondrial genomes (mtDNA) and two antigens: merozoite surface protein 1 42 kDa (MSP-1(42)) and circumsporozoite protein gene (CSP) were amplified, cloned, and sequenced. Fifteen orangutans tested positive and yielded 5 distinct mitochondrial haplotypes not previously found. The haplotypes detected exhibited low genetic divergence among them, indicating that they belong to one species. We report phylogenetic analyses using mitochondrial genomes, MSP-1(42) and CSP. We found that the orangutan malaria parasite lineage was part of a monophyletic group that includes all the known non-human primate malaria parasites found in Southeast Asia; specifically, it shares a recent common ancestor with P. inui (a macaque parasite) and P. hylobati (a gibbon parasite) suggesting that this lineage originated as a result of a host switch. The genetic diversity of MSP-1(42) in orangutans seems to be under negative selection. This result is similar to previous findings in non-human primate malarias closely related to P. vivax. As has been previously observed in the other Plasmodium species found in non-human primates, the CSP shows high polymorphism in the number of repeats. However, it has clearly distinctive motifs from those previously found in other malarial parasites. CONCLUSION: The evidence available from Asian apes indicates that these parasites originated independently from those found in Africa, likely as the result of host switches from other non-human primates.

Airsacculitis in fourteen juvenile southern Bornean orangutans (Pongo pygmaeus wurmbii).

BACKGROUND: Airsacculitis is a clinical condition which has been reported in a range of primates species, including orangutans. METHODS: This report describes the occurence and management of airsacculitis in fourteen juvenile Southern Bornean orangutans (Pongo pygmaeus wurmbii) that presented beween January 1st 1999 and January 31st 2001 at the Orangutan Care Center and Quarantine (OCC&Q), Kalimantan Tengah, Indonesia (S 2 degrees 43' 49.2"; E 111 degrees 38' 54.2"). Details of the signalment, clinical history, presenting clinical signs, clinicopathological findings and bacterial isolates in each case were reviewed. RESULTS: Cough, halitosis and nasal discharge were the most frequently observed clinical signs. A range of Gram-negative bacteria were isolated from infected air sacs, including Pseudomonas sp., Enterobacter sp. and Klebsiella pneumoniae. A simple drainage and lavage technique was used in cases where surgical intervention was indicated, in combination with local and systemic antibiotic therapy. CONCLUSIONS: The importance of early diagnosis, prompt management and antibiotic selection, based on bacterial culture and sensitivity profiles, is outlined.

Subadult male orangutan sociality and reproductive behavior at Tanjung Puting.

During a four-year period at Tanjung Puting Reserve, Central Indonesian Borneo, subadult males were observed for 670.5 observation hours, 463 hours of which were as focal individuals. Subadult males were quite gregarious, participating in groupings for 40.9% of the time they were observed as targets. Subadult male sociality centered around females; 83% of the time subadult males spent in groupings was exclusively with females, as compared to 3% of contact time spent exclusively with other males. Much subadult male sociality can be understood in terms of male-male competition for females. Interactions between adult and subadult males were almost entirely determined by the presence or absence of females. Adult males were more belligerent when females were present. Twenty-two copulations or attempted copulations occurred during 16 subadult male-female encounters, two of which were consortships. The majority of subadult male copulations (86%) were resisted matings. Outside of consortship, resisted matings (or the first in a series of resisted matings or attempts) usually took place at encounter or shortly thereafter. Subadult males also surreptitiously followed adult males and their consorts. Subadults frequently located receptive females before adult males did but were replaced by adult males when these appeared. Subadult male reproductive strategy consisted of both sneak/"rape" and consort tactics with sneak/"rape" predominating.

Orangutan sociality at Tanjung Puting.

During a four-year period, more than 6,800 hours of observation were collected on 58 individually recognized wild orangutans in a 35-km2 study area at the Tanjung Puting Reserve, Kalimantan Tengah (Central Indonesian Borneo). As in other areas, although small temporary associations of orangutans recurred, the basic units of populations consisted of (1) adult males, (2) adult females with one or two dependent offspring, and (3) independent immatures (adolescent males and females and subadult males) with units predominantly solitary. However, independent immatures were more gregarious and social than adults. Adolescent females in particular spent more time in groupings than did adult females. Although successfully consorting adult males might spend up to 22% of time observed in association with other orangutans, adult males were the least social of all age/sex classes once consortships were excluded. Ninety percent of their participation in social groupings consisted of sexual consortships. Adult males were totally intolerant of each other; only four encounters between adult males were observed. All involved avoidance or aggression, including one lengthy combat. Adult females were solitary but social and participated in a variety of groupings. However, with the exception of adult females briefly following consorting couples, nonreceptive adult females did not initiate or maintain social contact with orangutans other than adult females. Comparisons with results of studies from other areas indicate that, once samples used in each study are made explicit and aggregations owing to chance encounters at major food sources excluded, orangutan sociality seems relatively consistent over the entire range in which the species is found. Bornean orangutans are not as totally asocial as the first studies in the wild indicated. In fact, it would probably be better to characterize wild orangutans as semisolitary, rather than solitary.

Brief report: Crocodile predation on a crab-eating macaque in Borneo.

An immature crab-eating macaque (Macaca fascicularis), which was sitting on the river bank near the Orangutan Research and Conservation Project base camp in the Tanjung Puting Reserve, Kalimantan Tengah, Indonesia, was seized by a crocodile which rapidly emerged from the water and then resubmerged with the monkey in its jaws. As crocodile populations are in a decline throughout Borneo, crocodile predation on crab-eating macaques was probably more frequent in the past. This predation may have influenced development of some behaviors with an antipredator function in M. fascicularis.