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Botta's pocket gopher (Thomomys bottae) is a common and widespread subterranean rodent of the North American west. The species has been of long interest to evolutionary biologists due to the phenotypic diversity across its range and unusual levels of variation in chromosome number and composition. Here, we present a high-quality reference genome from a male T. b. bottae individual captured in the San Francisco Bay Area. The assembly is comprised of 2,792 scaffolds, with a scaffold N50 value of 23.6 Mb and a BUSCO score of 91.0%. This genome helps fill a significant taxonomic sampling gap in rodent genome resources. With this reference genome, we envision new opportunities to investigate questions regarding the genomics of adaptation to the belowground niche. Further, we can begin to explore the impact of associated life history traits, such as limited dispersal and low population connectivity, on intraspecific genetic and phenotypic variation, genome evolution, speciation, and phylogenetic relationships across the Geomyoidea.
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Sensory feedback provides critical interactive information for the effective use of hand prostheses. Non-invasive neural interfaces allow convenient access to the sensory system, but they communicate a limited amount of sensory information. This study examined a novel approach that leverages a direct and natural sensory afferent pathway, and enables an evoked tactile sensation (ETS) of multiple digits in the projected finger map (PFM) of participants with forearm amputation non-invasively. A bidirectional prosthetic interface was constructed by integrating the non-invasive ETS-based feedback system into a commercial prosthetic hand. The pressure information of five fingers was encoded linearly by the pulse width modulation range of the buzz sensation. We showed that simultaneous perception of multiple digits allowed participants with forearm amputation to identify object length and compliance by using information about contact patterns and force intensity. The ETS enhanced the grasp-and-transport performance of participants with and without prior experience of prosthetic use. The functional test of transport-and-identification further revealed improved execution in classifying object size and compliance using ETS-based feedback. Results demonstrated that the ETS is capable of communicating somatotopically compatible information to participants efficiently, and improves sensory discrimination and closed-loop prosthetic control. This non-invasive sensory interface may establish a viable way to restore sensory ability for prosthetic users who experience the phenomenon of PFM.
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Membros Artificiais , Retroalimentação Sensorial , Dedos , Desenho de Prótese , Tato , Estimulação Elétrica Nervosa Transcutânea , Humanos , Masculino , Estimulação Elétrica Nervosa Transcutânea/métodos , Adulto , Retroalimentação Sensorial/fisiologia , Dedos/fisiologia , Dedos/inervação , Feminino , Tato/fisiologia , Força da Mão/fisiologia , Antebraço/inervação , Amputados , Adulto Jovem , Percepção do Tato/fisiologia , Desempenho Psicomotor/fisiologia , MãosRESUMO
Our study addresses the critical question of how learners acquire skills without the constant crutch of feedback, using a specialized training approach with intermittent feedback. Despite recognized benefits in skill retention, the underlying mechanisms of intermittent feedback in motor control neuroscience remain elusive. Leveraging a previously published dataset from visuomotor learning experiments with intermittent feedback, we tested a wide range of proxy-process models that posit the presence of an inferred error signal even when an explicit sensory performance is not present. The model structures encompassed a spectrum from first-order to higher-order variants, incorporating both constant and error-dependent rates of change in error. Furthermore, these proxy-process models investigated the impact of error-augmentation (EA) training on visuomotor learning dynamics. Rigorous cross-validation consistently identified a second-order proxy-process model structure accurately predicting motor learning across subjects and learning tasks. Model parameters elucidated the varying influences of EA settings on the rates of change in error, inter-trial variability, and steady-state performance. We then introduced a dynamic-Proxy support Multi-Rate Motor Learning (dPxMRML) model, which shed light on EA's effects on the fast and slow learning dynamics. The dPxMRML model accurately predicted subjects' performance during and beyond training phases, highlighting EA settings conducive to long-term retention. This research yields crucial insights for personalized training program design, applicable in neuro-rehabilitation, sports, and performance training.NEW & NOTEWORTHY Breaking new ground in motor learning, our research unveils the intricacies of skill acquisition without continuous feedback. By using a specialized training approach with intermittent feedback, our study reveals the previously elusive mechanisms behind this process. The introduction of innovative proxy-process models, particularly the dynamic-Proxy support Multi-Rate Motor Learning (dPxMRML) model, brings a fresh perspective to understanding the impact of error-augmentation (EA) training on learning and retention of motor skills.
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Aprendizagem , Destreza Motora , Desempenho Psicomotor , Humanos , Destreza Motora/fisiologia , Aprendizagem/fisiologia , Desempenho Psicomotor/fisiologia , Masculino , Adulto , Feminino , Adulto Jovem , Modelos NeurológicosRESUMO
Objective: To analyze real-world rehabilitation technology (RT) use, with a view toward enhancing RT development and adoption. Design: A convergent, mixed-methods study using direct field observations, semi-structured templates, and summative content analysis. Setting: Ten neurorehabilitation units in a single health system. Participants: 3 research clinicians (1OT, 2PTs) observed â¼60 OTs and 70 PTs in inpatient; â¼18 OTs and 30 PTs in outpatient. Interventions: Not applicable. Main Outcome Measures: Characteristics of RT, time spent setting up and using RT, and clinician behaviors. Results: 90 distinct devices across 15 different focus areas were inventoried. 329 RT-uses were documented over 44 hours with 42% of inventoried devices used. RT was used more during interventions (72%) than measurement (28%). Intervention devices used frequently were balance/gait (39%), strength/endurance (30%), and transfer/mobility training (16%). Measurement devices were frequently used to measure vitals (83%), followed by grip strength (7%), and upper extremity function (5%). Device characteristics were predominately AC-powered (56%), actuated (57%), monitor-less (53%), multi-use (68%), and required little familiarization (57%). Set-up times were brief (mean ± SD = 3.8±4.21 and 0.8±1.3 for intervention and measurement, respectively); more time was spent with intervention RT (25.6±15) than measurement RT (7.3±11.2). RT nearly always involved verbal instructions (72%) with clinicians providing more feedback on performance (59.7%) than on results (30%). Therapists' attention was split evenly between direct attention towards the patient during clinician treatment (49.7%) and completing other tasks such as documentation (50%). Conclusions: Even in a tech-friendly hospital, majority of available RT were observed un-used, but identifying these usage patterns is crucial to predict eventual adoption of new designs from earlier stages of RT development. An interactive data visualization page supplement is provided to facilitate this study.
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BACKGROUND: Analysis of tongue movement would benefit from a reference showcasing healthy tongue capability. We aimed to develop a reference of tongue capability and evaluated the role of visual feedback on the expression of movement. METHODS: Using a wireless tracking intraoral wearable device, we composed probability distributions of the tongue tip as subjects were asked to explore the entire sensing surface area. Half of the 32 subjects received live visual feedback of the location of the center of the tongue tip contact. RESULTS: We observed that the visual feedback group was 51.0% more consistent with each other in the position domain, explored 21.5% more sensing surface area, and was 50.7% more uniformly distributed. We found less consistent results when we evaluated velocity and acceleration. CONCLUSION: Visual feedback best established a healthy capability reference which can be used for designing new interfaces, quantifying tongue ability, developing new diagnostic and rehabilitation techniques, and studying underlying mechanisms of tongue motor control.
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Retroalimentação Sensorial , Língua , Humanos , Movimento , RetroalimentaçãoRESUMO
The little pocket mouse, Perognathus longimembris, and its nine congeners are small heteromyid rodents found in arid and seasonally arid regions of Western North America. The genus is characterized by behavioral and physiological adaptations to dry and often harsh environments, including nocturnality, seasonal torpor, food caching, enhanced osmoregulation, and a well-developed sense of hearing. Here we present a genome assembly of Perognathus longimembris longimembris generated from PacBio HiFi long read and Omni-C chromatin-proximity sequencing as part of the California Conservation Genomics Project. The assembly has a length of 2.35 Gb, contig N50 of 11.6 Mb, scaffold N50 of 73.2 Mb, and includes 93.8% of the BUSCO Glires genes. Interspersed repetitive elements constitute 41.2% of the genome. A comparison with the highly endangered Pacific pocket mouse, P. l. pacificus, reveals broad synteny. These new resources will enable studies of local adaptation, genetic diversity, and conservation of threatened taxa.
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Cromossomos , Genoma , Animais , Camundongos , Genômica , América do NorteRESUMO
Natural history museums are vital repositories of specimens, samples and data that inform about the natural world; this Formal Comment revisits a Perspective that advocated for the adoption of compassionate collection practices, querying whether it will ever be possible to completely do away with whole animal specimen collection.
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Museus , Manejo de Espécimes , Animais , História NaturalRESUMO
Control of movement is learned and uses error feedback during practice to predict actions for the next movement. We have shown that augmenting error can enhance learning, but while such findings are encouraging the methods need to be refined to accommodate a person's individual reactions to error. The current study evaluates error fields (EF) method, where the interactive robot tempers its augmentation when the error is less likely. 22 healthy participants were asked to learn moving with a visual transformation, and we enhanced the training with error fields. We found that training with error fields led to greatest reduction in error. EF training reduced error 264% more than controls who practiced without error fields, but subjects learned more slowly than our previous error magnification technique. We also found a relationship between the amount of learning and how much variability was induced by the error augmentation treatments, most likely leading to better exploration and discovery of the causes of error. These robotic training enhancements should be further explored in combination to optimally leverage error statistics to teach people how to move better.
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Phenotypic convergence across distantly related taxa can be driven by similar selective pressures from the environment or intrinsic constraints. The roles of these processes on physiological strategies, such as homeothermy, are poorly understood. We studied the evolution of thermal properties of mammalian pelage in a diverse community of rodents inhabiting the Mojave Desert, USA. We used a heat flux device to measure the thermal insulation of museum specimens and determined whether thermal properties were associated with habitat preferences while assessing phylogenetic dependence. Species that prefer arid habitats exhibited lower conductivity and thinner pelage relative to species with other habitat preferences. Despite being thinner, the pelage of arid species exhibited comparable insulation to the pelage of the other species due to its lower conductivity. Thus, arid species have insulative pelage while simultaneously benefitting from thin pelage that promotes convective cooling. We found no evidence of intrinsic constraints or phylogenetic dependence, indicating pelage readily evolves to environmental pressures. Thermoregulatory simulations demonstrated that arid specialists reduced energetic costs required for homeothermy by 14.5% by evolving lower conductivity, providing support for adaptive evolution of pelage. Our study indicates that selection for lower energetic requirements of homeothermy has shaped evolution of pelage thermal properties.
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Regulação da Temperatura Corporal , Roedores , Animais , Filogenia , Aclimatação , Ecossistema , Mamíferos , Adaptação FisiológicaRESUMO
Sleep in epilepsy is best studied in longitudinal preclinical animal models, where state changes can have significant effects on epileptic activities. Voluminous data makes it very difficult to mark sleep stages manually. This demands an automated way to detect sleep and wake states. We developed an approach to characterize sleep-wake states in continuous video-electroencephalography (EEG) recordings in animals. We compared brute force approach based on frequency band-power based thresholding with machine learning algorithms to detect sleep in 600 hours of EEG data from 4 epileptic and 2 control animals. We found that conventional delta and theta band-powers were prominent in sleep; however, this was not sufficient to detect sleep algorithmically. We therefore extracted a set of novel frequency bands to robustly differentiate individual sleep states by using brute-force algorithm and machine learning models, among which k-nearest neighbors (KNN) was the best predictor of sleep with 94% accuracy. We subsequently characterized sleep patterns in animals with chronically induced epileptic spiking in the neocortex from tetanus toxin injections using brute-force algorithm. We found that epileptic spiking animals (without seizures) sleep more frequently, with significantly longer sleep segments and overall daily sleep time, as compared to control animals. This automated algorithm could help expedite sleep studies and help us understand the relationship between sleep and patients with epilepsy.
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Epilepsia , Neocórtex , Animais , Modelos Animais de Doenças , Eletroencefalografia , Epilepsia/diagnóstico , SonoRESUMO
Electronic skin (E-skin) is an emerging wearable device typically used to mimic the function of the human skin, mainly by replicating the role of tactile sensory receptors in the skin. This study showed an interesting modification of the E-skin, called an electro-prosthetic E-skin, which adds the functionality of distance sensing and stimulation of the palmar digital nerve. The electro-prosthetic E-skin operates as a closed loop to deliver the finger aperture distance information to the nervous system. This E-skin was implemented as an additional layer mounted to the original human skin, to be worn on the fingertip with a thin silicone substrate. The E-skin was designed to be mounted onto the index fingertip, to deliver the distance information between the fingertips and to enhance the finger aperture distance control. In this study, we demonstrated that electro-prosthetic proprioception (EPP), implemented with the electro-prosthetic E-skin, successfully delivered the distance information between the fingertips and enhanced the finger aperture distance control accuracy. Clinical Relevance- Presented electro-prosthetic E-skin delivering finger aperture distance via electro-prosthetic proprioception (EPP) will enhance accuracy of the finger aperture distance control. This technology can be applied to the neurosurgery to minimize unforced errors caused by the limited human control accuracy over the fingertip.
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Dedos , Dispositivos Eletrônicos Vestíveis , Dedos/fisiologia , Humanos , Propriocepção , Pele , Tato/fisiologiaRESUMO
Neurotraumas and neurological diseases often result in compromised proprioceptive feedback, which plays a critical role in motor control by delivering real-time position information. Electro-prosthetic proprioception (EPP) using frequency-modulated electrotactile feedback is a promising solution, as it can deliver proprioceptive information such as a joint angle via tactile channel. Prior works demonstrated that EPP successfully delivered distance information between the end effector and the target object. In this study, we implemented the electronic skin (E-skin) monitoring the elbow joint angle and delivering it to the nervous system via tactile channel. We also demonstrated that EPP improved both accuracy and precision of the elbow joint angle control. The gyroscope measuring the elbow joint angle and electrodes delivering electrotactile feedback were integrated together as a skin using thin silicon coating and polyurethane film. We call this novel E-skin, monitoring and delivering joint angle information, as an electro-prosthetic E-skin. Elbow joint angle matching test with two healthy human subjects showed that the EPP, via electro-prosthetic E-skin, enhanced 101.7% accuracy and 63.8% precision in elbow joint angle control. Clinical Relevance-Presented electro-prosthetic E-skin will address the compromised proprioceptive feedback by delivering joint angle information by electro-prosthetic proprioception (EPP) via tactile channel. This novel E-skin will open up a new path to assist and rehabilitative motor control problems after neurotraumas and neurological diseases.
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Articulação do Cotovelo , Dispositivos Eletrônicos Vestíveis , Eletrodos , Voluntários Saudáveis , Humanos , PropriocepçãoRESUMO
Walking is an important activity that supports the health-related quality of life, and for those who need assistance, robotic devices are available to help. Recent progress in wearable robots has identified the importance of customizing the assistance provided by the robot to the individual, resulting in robot adaptation to the human. However, current implementations minimize the role of human adaptation to the robot, for example, by the users modifying their movements based on the provided robot assistance. This study investigated the effect of visual feedback to guide the users in adapting their movements in response to wearable robot assistance. The visual feedback helped the users reduce their metabolic cost of walking without any changes in robot assistance in a given time. In a case with the initially metabolic expensive (IMExp) exoskeleton condition, both training methods helped reduce the metabolic cost of walking. The results suggest that visual feedback training is helpful to use the exoskeleton for various conditions. Without feedback, the training is helpful only for the IMExp exoskeleton condition. This result suggests visual feedback training can be useful to facilitate the use of non-personalized, generic assistance, where the assistance is not tuned for each user, in a relatively short time.
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Exoesqueleto Energizado , Adaptação Fisiológica , Fenômenos Biomecânicos , Marcha/fisiologia , Humanos , Qualidade de Vida , Caminhada/fisiologiaRESUMO
Little is known about how two people physically coupled together (a dyad) can accomplish tasks. In a pilot study we tested how healthy inexperienced and experienced dyads learn to repeatedly reach to a target and stop while challenged with a 30 degree visuomotor rotation. We employed the Pantograph investigational device that haptically couples partners movements while providing cursor feedback, and we measured the amount and speed of learning to test a prevailing hypothesis: dyads with no experience learn faster than an experienced person coupled with a novice. We found significant straightening of movements for dyads in terms of amount of learning (2.662±0.102 cm and 2.576±0.024 cm for the novice-novice and novice-experienced groups) at rapid rates (time constants of 17.83 ± 2.85 and 18.17.17±6.72 movements), which was nearly half the learning time as solo individuals' studies. However, we found no differences between the novice-novice and experienced-novice groups, though retrospectively our power was only 3 percent. This pilot study demonstrates new opportunities to investigate the advantages of partner-facilitated learning with solely haptic communication which and can lead to insights on control in human physical interactions and can guide the design of future human-robot-human interaction systems.
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Aprendizagem , Movimento , Humanos , Projetos Piloto , Estudos Retrospectivos , RotaçãoRESUMO
Stroke rehabilitation is often terminated once a plateau in motor recovery is observed, but new training modalities have demonstrated that further functional improvement is possible after the onset of the chronic phase. In particular, feedback technologies augmenting error proved to foster the relearning process. Here we explore the possibility of a robot-free implementation of Error-Augmentation (EA), where only visual feedback is distorted. We present the interim results from our ongoing blinded, randomized, controlled clinical trial testing the efficacy of parallel bimanual reaching with visual EA. Subjects trained in the virtual environment in 45-minute sessions, three times a week, for three weeks, half with and half without EA. A blinded therapist performed clinical evaluations before, 1 week after, and two months after training. Available results showed that both groups significantly improved. An advantage in the treatment group could be tracked at all time points, but no statistical significance was detectable between groups. Gains in the two groups were found to be compatible with the results of previous studies using robots and may prove to have similar effectiveness without the need for a costly and complicated robotic device. One new finding was that EA caused significantly higher inter-trial variability.
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Reabilitação do Acidente Vascular Cerebral , Acidente Vascular Cerebral , Retroalimentação Sensorial , Humanos , Sobreviventes , Extremidade SuperiorRESUMO
During motor learning, people often practice reaching in variety of movement directions in a randomized sequence. Such training has been shown to enhance retention and transfer capability of the acquired skill compared to the blocked repetition of the same movement direction. The learning system must accommodate such randomized order either by having a memory for each movement direction, or by being able to generalize what was learned in one movement direction to the controls of nearby directions. While our preliminary study used a comprehensive dataset from visuomotor learning experiments and evaluated the first-order model candidates that considered the memory of error and generalization across movement directions, here we expanded our list of candidate models that considered the higher-order effects and error-dependent learning rates. We also employed cross-validation to select the leading models. We found that the first-order model with a constant learning rate was the best at predicting learning curves. This model revealed an interaction between the learning and forgetting processes using the direction-specific memory of error. As expected, learning effects were observed at the practiced movement direction on a given trial. Forgetting effects (error increasing) were observed at the unpracticed movement directions with learning effects from generalization from the practiced movement direction. Our study provides insights that guide optimal training using the machine-learning algorithms in areas such as sports coaching, neurorehabilitation, and human-machine interactions.
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BACKGROUND: Our previous work showed that speed is linked to the ability to recover in chronic stroke survivors. Participants moving faster on the first day of a 3-week study had greater improvements on the Wolf Motor Function Test. METHODS: We examined the effects of three candidate speed-modifying fields in a crossover design: negative viscosity, positive viscosity, and a "breakthrough" force that vanishes after speed exceeds an individualized threshold. RESULTS: Negative viscosity resulted in a significant speed increase when it was on. No lasting after effects on movement speed were observed from any of these treatments, however, training with negative viscosity led to significant improvements in movement accuracy and smoothness. CONCLUSIONS: Our results suggest that negative viscosity could be used as a treatment to augment the training process while still allowing participants to make their own volitional motions in practice. TRIAL REGISTRATION: This study was approved by the Institutional Review Boards at Northwestern University (STU00206579) and the University of Illinois at Chicago (2018-1251).
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Robótica/instrumentação , Robótica/métodos , Reabilitação do Acidente Vascular Cerebral/instrumentação , Reabilitação do Acidente Vascular Cerebral/métodos , Idoso , Braço/fisiopatologia , Estudos Cross-Over , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Movimento/fisiologia , Acidente Vascular Cerebral/fisiopatologia , Sobreviventes , ViscosidadeRESUMO
The taxonomic history of Euryoryzomys legatus has been complex and controversial, being either included in the synonymy of other oryzomyine species or considered as a valid species, as in the most recent review of the genus. Previous phylogenetic analyses segregated E. legatus from E. russatus, its putative senior synonym, but recovered it nested within E. nitidus. A general lack of authoritative evaluation of morphological attributes, details of the chromosome complement, or other data types has hampered the ability to choose among alternative taxonomic hypotheses, and thus reach a general consensus for the status of the taxon. Herein we revisit the status of E. legatus using an integrated approach that includes: (1) a morphological review, especially centered on specimens from northwestern Argentina not examined previously, (2) comparative cytogenetics, and (3) phylogenetic reconstruction, using mitochondrial genes. Euryoryzomys legatus is morphologically and phylogenetically distinct from all other species-level taxa in the genus, but its 2n=80, FN=86 karyotype is shared with E. emmonsae, E. nitidus, and E. russatus. Several morphological and morphometric characters distinguish E. legatus from other species of Euryoryzomys, and we provide an amended diagnosis for the species. Morphological characters useful in distinguishing E. legatus from E. nitidus, its sister taxon following molecular analyses, include: larger overall size, dorsal fur with a strong yellowish brown to orange brown tinge, flanks and cheeks with an orange lateral line, ventral color grayish-white with pure white hairs present only on the chin, presence of a thin blackish eye-ring, tail bicolored, presence of an alisphenoid strut and a well-developed temporal and lambdoid crests in the skull, and a labial cingulum on M3. Molecular phylogenetic analyses recovered E. legatus as a monophyletic group with high support nested within a paraphyletic E. nitidus; genetic distances segregated members of both species, except for an exemplar of E. nitidus. Our integrated analyses reinforce E. legatus as a full species, but highlight that E. macconnelli, E. emmonsae, and E. nitidus each may be a species complex and worthy of systematic attention. Finally, we also evaluated the chromosome evolution of the genus within a phylogenetic context.
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In dyadic motor learning, pairs of people learn the same motion while their limbs are loosely coupled together using haptic devices. Such coupled learning has been shown to outperform solo learning (including robot-guided learning) for simple one-degree-of-freedom tasks. However, results from more complex tasks are limited and sometimes conflicting. We thus evaluated coupled learning in a two-degree-of-freedom tracking task where participants also had to compensate for a simple force field. Participant pairs were split into two groups: an experiment group that experienced a compliant haptic coupling between participants' hands and a control group that did not. The study protocol consisted of 70 repetitions of 18.9-second tracking trials: 10 initial solo trials with no coupling, 50 "learning" trials (where participants in the experiment group were coupled), and 10 final solo trials with no coupling. The experiment group (coupled) improved their solo tracking performance both in the presence (p = 0.008) and absence (p <; 0.001) of the force field; however, the control group (no coupling) only improved their solo performance in the absence of the force field (p <; 0.001) but not in the presence of the field (p = 0.81). This suggests that dyadic motor learning can outperform solo learning for two-dimensional tracking motions in the presence of a simple force field, though the mechanism by which learning is improved is not yet clear.Clinical Relevance-As motor learning is critical for applications such as motor rehabilitation, dyadic training could be used to achieve a better overall outcome and a faster learning speed in these applications compared to solo training.
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Mãos , Aprendizagem , HumanosRESUMO
BACKGROUND: Clinical practice typically emphasizes active involvement during therapy. However, traditional approaches can offer only general guidance on the form of involvement that would be most helpful to recovery. Beyond assisting movement, robots allow comprehensive methods for measuring practice behaviors, including the energetic input of the learner. Using data from our previous study of robot-assisted therapy, we examined how separate components of mechanical work contribute to predicting training outcomes. METHODS: Stroke survivors (n = 11) completed six sessions in two-weeks of upper extremity motor exploration (self-directed movement practice) training with customized forces, while a control group (n = 11) trained without assistance. We employed multiple regression analysis to predict patient outcomes with computed mechanical work as independent variables, including separate features for elbow versus shoulder joints, positive (concentric) and negative (eccentric), flexion and extension. RESULTS: Our analysis showed that increases in total mechanical work during therapy were positively correlated with our final outcome metric, velocity range. Further analysis revealed that greater amounts of negative work at the shoulder and positive work at the elbow as the most important predictors of recovery (using cross-validated regression, R2 = 52%). However, the work features were likely mutually correlated, suggesting a prediction model that first removed shared variance (using PCA, R2 = 65-85%). CONCLUSIONS: These results support robotic training for stroke survivors that increases energetic activity in eccentric shoulder and concentric elbow actions. TRIAL REGISTRATION: ClinicalTrials.gov, Identifier: NCT02570256. Registered 7 October 2015 - Retrospectively registered.