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1.
Spectrochim Acta A Mol Biomol Spectrosc ; 314: 124174, 2024 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-38518440

RESUMO

Herein, we investigate the effects of the irreversible action of the medium on the theoretical elucidation of the IR spectrum of weakly H-bonded systems, a prototypical model which provides a rigorous treatment of the relaxation mechanisms impacts on the IR spectral density. The attention will be focused particularly on the effect of indirect damping on the IRυS(X-H⃗) spectrum beyond the harmonic and adiabatic approximations. The ultimate objective of the present investigation is the treatment of the action of the surrounding of the intermonomer modes of H-bonded systems, which must induce a broadening of the Dirac delta peaks, the nature of which, as shown by Maréchal and Witkowski theory, is a Franck-Condon progression. The quantum treatment of the IR absorption band reveals that quantum relaxation of the intermonomer mode of H-bonded complexes could be successfully approached by a non-Hermitian Hamiltonian formalism. Motivated by development of a second method that will be able to validate the first approach, a computationally efficient algorithm was proposed for elucidating the quantum indirect relaxation using Hermitean Hamiltonians. The real eigenvalues, corresponding to different energies of the system are considered to be complex by adjunction of the imaginary parts, which reflects the action of the indirect irreversible action of the medium. These two crude approaches may pave the way for the incorporation of the mechanism of indirect relaxation in more physical and complex situations dealing, particularly, with tunnelling effects in strong H-bonded species, Fermi resonances, and Davydov coupling for cyclic H-bonds dimers beyond the harmonic and adiabatic assumptions.

2.
ACS Omega ; 7(49): 45719-45731, 2022 Dec 13.
Artigo em Inglês | MEDLINE | ID: mdl-36530279

RESUMO

Due to their outstanding properties for optoelectronic and versatile electronic applications, the atomically thin layers of transition-metal dichalcogenide (TMDC) materials have demonstrated a potential candidacy to succeed its analog silicon-based technology. Hence, the elucidation of the most important features of these materials is indispensable. In this study, we provide a theoretical elucidation of the structural, electronic, elastic, and optical characteristics of TMDCs. The study has been carried out by elucidating the material in its two particular forms, namely, bulk and two-dimensional (2D) layered (monolayer). The theoretical investigation was carried out within the framework of the density functional theory (DFT) method using first-principles calculations. The Perdew-Burke-Ernzerhof (PBE) variant of the generalized gradient approximation (GGA) scheme, as performed in the Quantum Espresso package, is used. Van der Waals density functional effects, involving the nonlocal correlation part from the rVV10 and vdW-DF2 methods, were treated to remedy the lack of the long-range vdW interaction. An illustration of the performance of both rVV10 and vdW-DF2 functionalities, with the popular PBE correlations, is elucidated. The Born stability criterion is employed to assess structural stability. The obtained results reveal an excellent stability of both systems. Furthermore, the theoretical results show that band-gap energy is in excellent agreement with experimental and theoretical data. Pugh's rule suggested that both the bulk and MoS2-2D layered systems are ductile materials. The refractive indices obtained herein are in good agreement with the available theoretical data. Moreover, the theoretical results obtained with the present approach demonstrate the ductility of both systems, namely, the bulk and the MoS2-2D layered. The results obtained herein hold promise for structural, elastic, and optical properties and pave the way for potential applications in electronic and optoelectronic devices.

3.
J Phys Chem A ; 126(33): 5604-5620, 2022 Aug 25.
Artigo em Inglês | MEDLINE | ID: mdl-35960542

RESUMO

Herein, the infrared spectroscopic properties of molecular succinic acid crystals (SA) and their four isotopic analogs [C2H4(COOH)2, h6-SA; C2H4(COOD)2, d2-SA; C2D4(COOH)2, d4-SA; C2D4(COOD)2, d6-SA] are reported. The correlation between the structure of succinic acid molecules and their corresponding hydrogen bond energies is elucidated. The effects related to the isotopic dilution as well as the changes in the spectrum recording temperature on the fine structures of the vO-H and vO-D bands are interpreted. The infrared spectral anomalies detected in the spectra of isotopically neat succinic nanocrystal acids are confirmed by theoretical calculations using density functional theory (DFT). According to previous spectroscopic studies of succinic acid and those carried out for α,ω-dicarboxylic acids, a decent agreement between the experimental results and the theoretical DFT simulations is obtained. Moreover, the spectra of single crystals of the h6 and d4 succinic acid variants prove that the vibrational coupling mechanism between the (COOH)2 cycles is rigorously convergent to that detected in the spectra of aromatic carboxylic acids, suggesting thereby that the promotion of symmetry-forbidden high stretching IR transitions plays a crucial role. Furthermore, the obtained experimental results reveal that the succinic acid shows a spectral behavior significantly different from that characteristic of hydrogen associations of other acids of homologous series, such as the glutaric, adipic, malonic, and pimelic acid crystals. The results obtained herein shed light on the way to explore the revealed structure of isotopic derivatives of succinic acid crystals and may prove to be useful results for understanding the nature of unconventional interactions as well as the macroscopic energy effects directing the development of hydrogen associations.


Assuntos
Hidrogênio , Ácido Succínico , Cristalização , Ligação de Hidrogênio , Espectrofotometria Infravermelho , Ácido Succínico/química
4.
Magn Reson Chem ; 60(9): 884-892, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-35691917

RESUMO

Phosphate-based glasses such as pure germanophosphate can be achieved at moderately low temperature by means of affordable chemical substances. Nowadays, they become more stimulating because they can be easily doped with alkali, transition metal ions, and rare earth oxides to afford the anticipated physical and/or chemical features for nanoscience applications. Herein, we report an experimental study dealing with the structure of pure germanophosphate glass samples of GeO 2 prepared with different concentrations ranging from 20 up to 70 mole%. 31 P magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy has been employed to characterize the co-formed glasses by two different glass-forming oxides. The components of the phosphate species ( Q n ) in each sample were determined by analyzing the MAS NMR spectra. Interestingly, 31 P MAS NMR spectrum for each sample was found to be characteristic powder patterns of the middle units Q2 . Q2  unit found herein has one oxygen atom bonded towards one germanium atom (non-bridging) and the other two oxygens are bonding towards two phosphorus atoms (bridging) of phosphate group (PO4 ). The results show that Q2 split into two units, Q2 I and Q2 II, due to different shielding of the phosphorus nucleus provided by the next nearest neighbor atoms. The chemical shift is interpreted in terms of the structure of each building unit of the phosphate group. The results obtained herein shed light on the way how to explore the revealed structure of the prepared glasses for the development of supported catalysts. Indeed, owing to their high chemical/thermal stability, the co-formed germanophosphate glasses obtained may prove as useful substrates for potential nanocatalysts.

5.
Materials (Basel) ; 14(9)2021 Apr 27.
Artigo em Inglês | MEDLINE | ID: mdl-33925649

RESUMO

For both the B2O3-Bi2O3-CaO and B2O3-Bi2O3-SrO glass systems, γ-ray and neutron attenuation qualities were evaluated. Utilizing the Phy-X/PSD program, within the 0.015-15 MeV energy range, linear attenuation coefficients (µ) and mass attenuation coefficients (µ/ρ) were calculated, and the attained µ/ρ quantities match well with respective simulation results computed by MCNPX, Geant4, and Penelope codes. Instead of B2O3/CaO or B2O3/SrO, the Bi2O3 addition causes improved γ-ray shielding competence, i.e., rise in effective atomic number (Zeff) and a fall in half-value layer (HVL), tenth-value layer (TVL), and mean free path (MFP). Exposure buildup factors (EBFs) and energy absorption buildup factors (EABFs) were derived using a geometric progression (G-P) fitting approach at 1-40 mfp penetration depths (PDs), within the 0.015-15 MeV range. Computed radiation protection efficiency (RPE) values confirm their excellent capacity for lower energy photons shielding. Comparably greater density (7.59 g/cm3), larger µ, µ/ρ, Zeff, equivalent atomic number (Zeq), and RPE, with the lowest HVL, TVL, MFP, EBFs, and EABFs derived for 30B2O3-60Bi2O3-10SrO (mol%) glass suggest it as an excellent γ-ray attenuator. Additionally, 30B2O3-60Bi2O3-10SrO (mol%) glass holds a commensurably bigger macroscopic removal cross-section for fast neutrons (ΣR) (=0.1199 cm-1), obtained by applying Phy-X/PSD for fast neutrons shielding, owing to the presence of larger wt% of 'Bi' (80.6813 wt%) and moderate 'B' (2.0869 wt%) elements in it. 70B2O3-5Bi2O3-25CaO (mol%) sample (B: 17.5887 wt%, Bi: 24.2855 wt%, Ca: 11.6436 wt%, and O: 46.4821 wt%) shows high potentiality for thermal or slow neutrons and intermediate energy neutrons capture or absorption due to comprised high wt% of 'B' element in it.

6.
Spectrochim Acta A Mol Biomol Spectrosc ; 242: 118728, 2020 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-32781405

RESUMO

Over the last decades, several approaches have been developed for elucidating the infrared spectral density of dicarboxylic acid crystals, which has been served as prototype for determining hydrogen bonds dynamics. These approaches differ in how accurately the simulated spectra can superimpose the experimental ones. In this study, we present a superdimer quantum approach susceptible to elucidate the infrared spectral properties of some particular dicarboxylic acid crystals using a newly proposed algorithm, which favors the rule of Davydov coupling in the generation of the spectra. The approach, which is herein effectively applied to terephthalic and phthalic acid dimer crystals, ascribes the non-conventional IR spectral properties of these particular acid crystals to the existence of superdimer structure in their lattices. In this superdimer structure, a strong vibronic coupling mechanism, namely Davydov coupling, takes place between the proton stretching vibrations in the (COOH)2 cycles. This strong coupling exciton, generated by the resonance arising in the two coupled (COOH)2 cycles of the aromatic rings of the superdimer, in conjunction with the strong anharmonic coupling between the fast and slow modes of each hydrogen bonds provide a strong support basis for a common explanation of the physical properties of these two different crystalline systems. The numerical simulations, involving the implications of the superdimer model, are systematically correlated with the experimental spectra. A decent agreement between the evaluated spectra and the experimental bandshapes of terephthalic and phthalic dicarboxylic acid crystals was obtained using a set of physically sound parameters as inputs in the theoretical formulation. The superdimer quantum approach thereby underscore the potential of the dynamical cooperative interactions between "Davydov coupling" and "strong anharmonic coupling" mechanisms in the generation of the spectral features of terephthalic and phthalic dicarboxylic acid crystals, suggesting that the congregated effects of these two mechanisms can be considered as the most reliable source of the non-conventional IR spectral properties observed. It is therefore expected that this novel algorithm reduces the discrepancies between the simulated spectra compared to the experimental one and simplify the computation of spectra in more complex hydrogen bonded systems.

7.
Spectrochim Acta A Mol Biomol Spectrosc ; 237: 118302, 2020 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-32416514

RESUMO

Oxindole (indolin-2-one, Ox) is a unique and a crucial molecular system in spectroscopic studies. Indole is the core structure of many substances found in the human body (tryptophan, serotonin) and the indole alkaloids have highly differentiated pharmacological properties such as analgesic, anti-fever and anti-inflammatory. The Ox's structural results given in the Cambridge Structural Database revealed the existence of only one crystalline form of Ox, referred to the α-form. However, we have experimentally noticed the existence of two polymorphic forms during the crystallization of Ox. Furthermore, the significant spectral differences that we have observed in the solid state infrared spectra of these two forms additionally confirm the existence of the polymorphism phenomenon. Of the four polymorphic forms of Ox, two of them - α - and ß-forms - were of particular interest. In the crystalline lattices of both polymorphs, we observed a similar pattern of molecular arrangements giving rise to the supramolecular synthon according to the terminology of Etter. Moreover, hydrogen bonds in the dimer of the α-form are found to be non-equivalent (non-centrosymmetric dimers), having a length of 2797 Å and 2979 Å, respectively. Comparatively, in the most densely packed crystalline structure of Ox, the ß-form, the dimer is formed by a pair of almost identical intermolecular hydrogen bonds and consequently the crystals of ß-form exhibited spectral properties typical to centrosymmetric hydrogen bond dimers. In addition, the spectroscopic studies that we have conducted to polymorphic forms of Ox, isotopically diluted with deuterium, show the dramatic influence of isotopic substitution in the hydrogen bridge on the infrared spectra of hydrogen bonding. Thus, the main goal of this work is the proposition of a theoretical approach that can describe the main features of the crystalline infrared spectra of the Ox polymorphs. The proposed approach is based on the phenomenon of the exciton coupling results directly from intermolecular interactions in the vibrationally excited state which leads to the delocalization of the excitation over the molecules in the lattice and to the Davydov splitting effect in the crystalline spectra.

8.
Spectrochim Acta A Mol Biomol Spectrosc ; 236: 118312, 2020 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-32334383

RESUMO

We report new calculations of the transition probabilities for double electron photo-excitations near the KM edge in atomic Argon in the energy range 3220-3238 eV. The calculations were performed to study the X-ray photoabsorption spectrum of Argon near the KM edge using Multi-configurational Dirac-Hartee Fock method. Configuration interaction calculations showed that excitations to the doubly excited state [1s3p]3d2 is almost small compared to [1s3p]4p2 excitations, thus [1s3p]4p2 is the dominant transition in this energy range. The transition probabilities were convoluted into Breit-Wigner line shapes and compared to previous measurements of the X-ray photoabsorption spectrum of Argon near the KM edge, the comparison showed good agreement with experiment. The results of the calculations presentded herein therefore shed light on understanding of near KM edge features, and thereby the preferred excitation channels of the atom.

9.
Spectrochim Acta A Mol Biomol Spectrosc ; 207: 197-208, 2019 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-30240981

RESUMO

Following the previous theoretical developments to completely reproduce the IR spectra of weak hydrogen bond complexes within the framework of the linear response theory (LRT), the quantum theory of the high stretching mode spectral density (SD) of weak H-bonds is reconsidered. Within the LRT theory, the SD is the one sided Fourier transform of the autocorrelation function (ACF) of the high stretching mode dipole moment operator. In order to provide more accurate theoretical bandshapes, we have explored the equivalence between the SDs given in previous studies with respect to a new quantum one, and revealed that in place of the basic equations used in the precedent works for which the SD IOld(ω)=2Re∫0∞GOld(t)e-iωtdt where the ACF GOld(t) = ⟨µ(0)µ(t)+⟩ = tr {ρ {µ(0)} {µ(t)}+}, one can use a new expression for the SD, given by INew(ω)=2ωRe∫0∞GNew(t)e-iωtdt where GNew(t)=µ(0)µ(t)+=1ßtrρB∫0ßµ(0)µ(t+iλℏ)+dλ. Here ρB is the Boltzmann density operator, µ(0) the dipole moment operator at initial time and µ(t) the dipole moment operator at time t in the Heisenberg picture, ℏ is the Planck constant, ß is the inverse of the Boltzmann factor kBT where T is the absolute temperature and kB the Boltzmann constant. Using this formalism, we demonstrated that the new quantum approach gives the same final SD as used by previous models, and reduces to the Franck-Condon progression appearing in the Maréchal and Witkowski's pioneering approach when the relaxation mechanisms are ignored. Results of this approach shed light on the equivalence between the quantum and classical IR SD approaches for weak H-bonds in absence of medium surroundings effect, which has been a subject of debate for decades.

10.
J Phys Chem A ; 122(8): 2108-2115, 2018 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-29436830

RESUMO

The aim of this paper is to overhaul the quantum elucidation of the spectral density (SD) of weak H-bonds treated without taking into account any of the damping mechanisms. The reconsideration of the SD is performed within the framework the linear response theory. Working in the setting of the strong anharmonic coupling theory and the adiabatic approximation, the simplified expression of the classical SD, in the absence of dampings, is equated to be ICl(ω) = Re[∫0∞GCl(t)e-iΩt dt] in which the classical-like autocorrelation function (ACF), GCl(t), is given by GCl(t) = tr{ρ(ß){µ(0)}{µ(t)}†}. With this consideration, we have shown that the classical SD is equivalent to the line shape obtained by F(ω) = ΩICl(ω), which in turn is equivalent to the quantum SD given by IQu(ω) = Re[∫0∞GQu(t)e-iΩt dt], where GQu(t) is the corresponding quantum ACF having for expression GQu(t) = (1/ß) tr{ρ∫0ß[µ(0)}{µ(t + iλℏ)}†â€¯dλ}. Thus, we have shown that for weak H-bonds dealt without dampings, the SDs obtained by the quantum approaches are equivalent to the SDs geted by the classical approach in which the incepation ACF is, however, of quantum nature and where the line shape is the Fourier transform of the ACF times the angular frequency. It is further shown that the classical approach dealing with the SD of weak H-bonds leads identically to the result found by Maréchal and Witkowski in their pioneering quantum treatment where they ignored the linear response theory and dampings.

11.
J Phys Chem A ; 121(18): 3555-3566, 2017 May 11.
Artigo em Inglês | MEDLINE | ID: mdl-28418259

RESUMO

Theoretical IR spectral density of the high-frequency stretching mode of hydrogen bond (H-bond) systems is reported using a three-dimensional approach. The model, studied within the framework of linear response theory, involves the mechanical anharmonicity of the high-frequency stretching mode by contemplating its potential as an asymmetric double well potential, the mechanical anharmonicity of the H-bond Bridge by contemplating its potential as a Morse potential, Fermi resonances which occur between the high frequency stretching mode and the overtones of the bending modes, the electrical anharmonicity translated by the nonlinearity to second order in the electric dipole moment function of the fast mode, the second order modulation of the angular frequency and the equilibrium position of the fast mode on the slow mode coordinate, and direct and indirect relaxation mechanism. Moreover, the repulsive potential interposing in the fast mode potential is chosen in Gaussian form to account for the asymmetry of the fast mode potential and thereby elucidate the nature of the H-bond. The anharmonic coupling between the fast and slow frequency modes is handled within the strong anharmonic coupling theory. The direct relaxation of the fast mode and the indirect relaxation of the H-bond Bridge are consolidated using previous results [Rekik et al. Chem. Phys. 2008, 352, 65-76]. The infrared spectral density is calculated using the Fourier transform of the autocorrelation function of the transition dipole moment operator of the fast mode. The evolution of the infrared absorption is demonstrated, indicating that mixing of all these effects results in a broadening and complicated distribution of the spectral density. The result of this work underscores the necessity of simultaneously combining the maximum effects in H-bonded complexes for effectively modeling and interpreting their corresponding IR spectra.

12.
Phys Chem Chem Phys ; 19(8): 5917-5931, 2017 Feb 22.
Artigo em Inglês | MEDLINE | ID: mdl-28177021

RESUMO

Following the previous developments to simulate the fully infrared spectra of weak hydrogen bond systems within the linear response theory, an extension of the adiabatic model is presented here. A general formulation including the electrical anharmonicities in the calculation of the damped autocorrelation function of weak H-bonds is adopted to facilitate the support of the additional properties, and thus the IR spectra of the Cl-H[combining right harpoon above] stretching band in the gaseous (CH3)2OHCl complex. We have explored the origins of the broadening of the Cl-H[combining right harpoon above] stretching band. We found that the main features of the lineshape are attributed to electrical anharmonicity as a consequence of the large mixed second derivatives of the dipole moment with respect to the Cl-H[combining right harpoon above] bond and of the intermonomer elongations . In addition to providing more accurate theoretical band shapes, inclusion of the electrical anharmonicity in the present model paves the way for a more complete interpretation by generating three new Franck-Condon superposed distributions.

13.
Artigo em Inglês | MEDLINE | ID: mdl-27599190

RESUMO

This paper deals with the experimental and theoretical studies of abnormal properties of terephthalic acid (TAC) and phthalic acid (PAC) crystals manifested in the H/D isotopic exchange. The widely utilized deuteration routine appeared to be insufficiently effective in the case of the h6-TAC isotopomer. In the case of the d4-TAC derivative the isotopic exchange process occurred noticeably more effectively. In contrast, both isotopomers of PAC, h6 and d4, appeared much more susceptible for deuteration. A theoretical model was elaborated describing "long-distance" dynamical co-operative interactions involving hydrogen bonds in TAC and PAC crystals. The model assumes extremely strong dynamical co-operative interactions of hydrogen bonds from the adjacent (COOH)2 cycles. This leads to an additional stabilization of h6-TAC molecular chains. The interaction energies affect the chemical equilibrium of the H/D isotopic exchange. The model predicts a differentiated influence of the H and D atoms linked to the aromatic rings on to the process. In this approach the totally-symmetric CH bond stretching vibrations and the proton stretching totally symmetric vibrations couple with the π-electronic motions. It was also shown that identical hydrogen isotope atoms, H or D, in whole TAC molecules, noticeably enlarge the energy of the dynamical co-operative interactions in the crystals, in contrast to the case of different hydrogen isotopes present in the carboxyl groups and linked to the aromatic rings. The "long-distance" dynamical co-operative interactions in PAC crystals were found of a minor importance due to the electronic properties of PAC molecules.

14.
Spectrochim Acta A Mol Biomol Spectrosc ; 136 Pt C: 1409-17, 2015 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-25459700

RESUMO

The aim of the study reported in this paper is to investigate the role of the high partial pressure of hydrogen introduced during the growth of nanocrystalline silicon carbide thin films (nc-SiC:H). For this purpose, we report the preparation as well as spectroscopic studies of four series of nc-SiC:H obtained by radio-frequency magnetron sputtering at high partial pressure of hydrogen by varying the percentage of H2 in the gas mixture from 70% to 100% at common substrate temperature (TS=500°C). The effects of the dilution on the structural changes and the chemical bonding of the different series have been studied using Fourier transform infrared and Raman spectroscopy. For this range of hydrogen dilution, two groups of films were obtained. The first group is characterized by the dominance of the crystalline phase and the second by a dominance of the amorphous phase. This result confirms the multiphase structure of the grown nc-SiC:H thin films by the coexistence of the SiC network, carbon-like and silicon-like clusters. Furthermore, infrared results show that the SiC bond is the dominant absorption peak and the carbon atom is preferentially bonded to silicon. The maximum value obtained of the crystalline fraction is about 77%, which is relatively important compared to other results obtained by other techniques. In addition, the concentration of CHn bonds was found to be lower than that of SiHn for all series. Raman measurements revealed that the crystallization occurs in all series even at 100% H2 dilution suggesting that high partial pressure of hydrogen favors the formation of silicon nanocrystallites (nc-Si). The absence of both the longitudinal acoustic band and the transverse optical band indicate that the crystalline phase is dominant.

15.
J Chem Phys ; 138(14): 144106, 2013 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-24981527

RESUMO

We apply two approximate solutions of the quantum-classical Liouville equation (QCLE) in the mapping representation to the simulation of the laser-induced response of a quantum subsystem coupled to a classical environment. These solutions, known as the Poisson Bracket Mapping Equation (PBME) and the Forward-Backward (FB) trajectory solutions, involve simple algorithms in which the dynamics of both the quantum and classical degrees of freedom are described in terms of continuous variables, as opposed to standard surface-hopping solutions in which the classical degrees of freedom hop between potential energy surfaces dictated by the discrete adiabatic state of the quantum subsystem. The validity of these QCLE-based solutions is tested on a non-trivial electron transfer model involving more than two quantum states, a time-dependent Hamiltonian, strong subsystem-bath coupling, and an initial energy shift between the donor and acceptor states that depends on the strength of the subsystem-bath coupling. In particular, we calculate the time-dependent population of the photoexcited donor state in response to an ultrafast, on-resonance pump pulse in a three-state model of an electron transfer complex that is coupled asymmetrically to a bath of harmonic oscillators through the optically dark acceptor state. Within this approach, the three-state electron transfer complex is treated quantum mechanically, while the bath oscillators are treated classically. When compared to the more accurate QCLE-based surface-hopping solution and to the numerically exact quantum results, we find that the PBME solution is not capable of qualitatively capturing the population dynamics, whereas the FB solution is. However, when the subsystem-bath coupling is decreased (which also decreases the initial energy shift between the donor and acceptor states) or the initial shift is removed altogether, both the PBME and FB results agree better with the QCLE-based surface-hopping results. These findings highlight the challenges posed by various conditions such as a time-dependent external field, the strength of the subsystem-bath coupling, and the degree of asymmetry on the accuracy of the PBME and FB algorithms.

16.
J Phys Chem A ; 116(18): 4495-509, 2012 May 10.
Artigo em Inglês | MEDLINE | ID: mdl-22489963

RESUMO

We present a simulation of the OH stretching band in the gas-phase IR spectra of strongly hydrogen-bonded dimers of phosphinic acid and their deuterated analogs [(R(2)POOH(D), with R = CH(2)Cl, CH(3)], which is based on a model for a centrosymmetric hydrogen-bonded dimer that treats the high-frequency OH stretches harmonically and the low-frequency intermonomer (i.e., O···O) stretches anharmonically. This model takes into account the following effects: anharmonic coupling between the OH and O···O stretching modes; Davydov coupling between the two hydrogen bonds in the dimer; promotion of symmetry-forbidden OH stretching transitions; Fermi resonances between the fundamental of the OH stretches and the overtones of the in- and out-of-plane bending modes involving the OH groups; direct relaxation of the OH stretches; and indirect relaxation of the OH stretches via the O···O stretches. Using a set of physically sound parameters as input into this model, we have captured the main features in the experimental OH(D) bands of these dimers. The effects of key parameters on the spectra are also elucidated. By increasing the number and strength of the Fermi resonances and by promoting symmetry-forbidden OH stretching transitions in our simulations, we directly see the emergence of the ABC structure, which is a characteristic feature in the spectra of very strongly hydrogen-bonded dimers. However, in the case of the deuterated dimers, which do not exhibit the ABC structure, the Fermi resonances are found to be much weaker. The results of this model therefore shed light on the origin of the ABC structure in the IR spectra of strongly hydrogen-bonded dimers, which has been a subject of debate for decades.


Assuntos
Deutério/química , Hidrogênio/química , Modelos Químicos , Ácidos Fosfínicos/química , Simulação por Computador , Dimerização , Gases , Ligação de Hidrogênio , Estrutura Molecular , Espectrofotometria Infravermelho
17.
J Phys Chem A ; 116(9): 2117-30, 2012 Mar 08.
Artigo em Inglês | MEDLINE | ID: mdl-22272930

RESUMO

Polarized IR spectra of 2-thiopheneacetic acid and of 2-thiopheneacrylic acid crystals were measured at 293 and 77 K in the υ(O-H) and υ(O-D) band frequency ranges. The corresponding spectra of the two individual systems strongly differ, one from the other, by the corresponding band shapes as well as by the temperature effect characterizing the bands. The crystal spectral properties remain in close relation with the electronic structure of the two different molecular systems. We show that a vibronic coupling mechanism involving the hydrogen bond protons and the electrons on the π- electronic systems in the molecules determines the way in which the vibrational exciton coupling between the hydrogen bonds in the carboxylic acid dimers occurs. Strong coupling in 2-thiopheneacrylic acid dimers prefers a "tail-to-head"-type Davydov coupling widespread by the π- electrons. A weak through-space coupling in 2-thiopheneacetic acid dimers, of a van der Waals type, is responsible for a "side-to-side"-type coupling. The relative contribution of each exciton coupling mechanism in the dimer spectra generation is temperature and the molecular electronic structure dependent. This explains the observed difference in the temperature- induced evolution of the compared spectra.

18.
Artigo em Inglês | MEDLINE | ID: mdl-19884041

RESUMO

An extended quantum theoretical approach of the nu(X-H) IR lineshape of cyclic dimers of weakly H-bonded species is proposed. We have extended a previous approach [M.E.-A. Benmalti, P. Blaise, H.T. Flakus, O. Henri-Rousseau, Chem. Phys. 320 (2006) 267] by accounting for the anharmonicity of the slow mode which is described by a "Morse" potential in order to reproduce the polarized infrared spectra of the hydrogen and deuterium bond in acetylsalicylic acid (aspirin) crystals. From comparison of polarized IR spectra of isotopically neat and isotopically diluted aspirin crystals it resulted that centrosymmetric aspirin dimer was the bearer of the crystal main spectral properties. In this approach, the adiabatic approximation is performed for each separate H-bond bridge of the dimer and a strong non-adiabatic correction is introduced into the model via the resonant exchange between the fast mode excited states of the two moieties. Within the strong anharmonic coupling theory, according to which the X-H...Y high-frequency mode is anharmonically coupled to the H-bond bridge, this model incorporated the Davydov coupling between the excited states of the two moieties, the quantum direct and indirect dampings and the anharmonicity for the H-bond bridge. The spectral density is obtained within the linear response theory by Fourier transform of the damped autocorrelation functions. The evaluated spectra are in fairly good agreement with the experimental ones by using a minimum number of independent parameters. The effect of deuteration has been well reproduced by reducing simply the angular frequency of the fast mode and the anharmonic coupling parameter.


Assuntos
Anti-Inflamatórios não Esteroides/química , Aspirina/química , Deutério/química , Hidrogênio/química , Modelos Teóricos , Espectrofotometria Infravermelho/métodos , Cristalização , Matemática , Modelos Químicos , Modelos Moleculares
19.
Chemphyschem ; 10(17): 3021-33, 2009 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-19830763

RESUMO

Polarized IR spectra of the hydrogen bond in 2-thiophenic acid crystals, isotopically neat and of mixed H/D isotopic content, are measured at 298 and 77 K in the "residual" nuO-H and nuO-D band frequency ranges. This crystalline system provides spectra in these band frequency ranges that differ considerably in intensity distribution from the spectra of other H-bonded centrosymmetric dimeric species. This change in the spectral properties of the crystals is probably due to the influence of the sulfur atoms from the thiophene aromatic rings, which are directly linked to the (COOH)2 or (COOD)2 cycles. The magnitude of this effect correlates with the net electronic charge distribution at the 2- and 3-positions of substituted thiophene rings, which in a different way influences the electron charge density in the hydrogen bonds of the two thiophenic acid isomers. The experimental results for spectral structures are compared to predictions obtained with theoretical calculations involving the combined effects of anharmonicities, Davydov coupling, Fermi resonances, and direct and indirect relaxations within the framework of the linear response theory. Numerical results show that mixing of all these effects allows satisfactory reproduction of the main features of the experimental IR line shapes of crystalline H- and D-bonded 2-thiophenic acid at room and liquid-nitrogen temperatures.


Assuntos
Ácidos Carboxílicos/química , Ligação de Hidrogênio , Espectrofotometria Infravermelho , Tiofenos/química , Cristalização , Medição da Troca de Deutério , Modelos Moleculares , Estrutura Molecular , Temperatura
20.
Spectrochim Acta A Mol Biomol Spectrosc ; 74(1): 58-66, 2009 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-19524484

RESUMO

A full quantum theoretical model is proposed to study the nu(O-H) experimental IR line shapes of polarized crystalline glutaric and 1-naphthoic acid dimer crystals at room and liquid nitrogen temperatures. This work is an application of a previous model [M. E-A. Benmalti, D. Chamma, P. Blaise, and O. Henri-Rousseau, J. Mol. Struct. 785 (2006) 27-31] by accounting for Fermi resonances. The approach is dealing with the strong anharmonic coupling, Davydov coupling, multiple Fermi resonances between the first harmonics of some bending modes and the first excited state of the symmetric combination of the two nu(O-H) modes and the quantum direct and indirect relaxation. Numerical results show that mixing of all these effects allows to reproduce satisfactorily the main features of the experimental IR line shapes of crystalline hydrogenated and deuterated glutaric and 1-naphthoic acid crystals and are expected to provide efficient of Fermi resonances effects.


Assuntos
Ácidos Carboxílicos/química , Glutaratos/química , Modelos Teóricos , Naftalenos/química , Ácidos Carboxílicos/metabolismo , Cristalização , Dimerização , Glutaratos/metabolismo , Ligação de Hidrogênio , Espectroscopia de Ressonância Magnética , Modelos Biológicos , Naftalenos/metabolismo , Espectrofotometria Infravermelho/métodos
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