First Report of Atypical Xanthomonas euvesicatoria Strains Causing Bacterial Spot of Tomato in Nigeria.

Bacterial spot (BS) is an important disease of tomato in Nigeria (2). Although a xanthomonad was isolated from tomato in Nigeria and characterized using phenotypic and pathogenicity tests, the bacterium was not characterized genetically to confirm the species. To determine the species associated with BS, leaves were collected in fields in northwestern Nigeria from tomato plants showing typical BS symptoms, which consisted of dark, irregular-shaped brown leaf spots that coalesced, resulting in a blighted appearance. Isolations from individual lesions were made on nutrient agar (NA). Yellow, mucoid colonies typical of Xanthomonas were isolated from 14 lesions and all were determined to be amylolytic (3). To determine the races of these strains, bacterial suspensions of the tomato strains, derived from 24-h cultures grown on NA at 28°C, were adjusted to 108 CFU/ml and infiltrated into leaves of tomato and pepper differential genotypes (5). The tomato strains elicited hypersensitive reactions (HRs) on the four pepper differential lines and an HR on the tomato genotype FL 216, which contains the R gene Xv3, but elicited susceptible reactions on the tomato genotypes Hawaii 7998 and Bonny Best. These reactions are typical of X. perforans tomato race 3 strains (5). Multilocus sequence analysis (MLSA) of six housekeeping genes (fusA, lacF, gyrB, gltA, gapA, and lepA) was used to further analyze four representative strains (1) (GenBank Accession Nos. KJ938581 to KJ938584, KJ938588 to KJ938591, KJ938595 to KJ938598, KJ938602 to KJ938605, KJ938629 to KJ938632, and KJ938636 to KJ938639, respectively). A partial sequence of hrpB2 was also made since the four Xanthomonas species associated with BS can be differentiated based on sequence divergence of this gene (3) (KJ938609 to KJ938621 and KJ938628). The housekeeping gene sequences were aligned along with other Xanthomonas sequences imported from the National Center for Biotechnology Information (NCBI) database ( www.ncbi.nlm.nih.gov ) using the MUSCLE tool from MEGA software, 5.2.2. Maximum likelihood phylogenetic trees constructed for the six housekeeping gene sequences individually and in concatenation revealed that the strains grouped most closely with the X. euvesicatoria reference strain 85-10 but more distantly to X. perforans. The hrpB2 sequence, which is highly conserved for each Xanthomonas species pathogenic on tomato (4), was sequenced from the tomato strains. These sequences were identical to the hrpB2 sequence from X. perforans strains but different from X. euvesicatoria. Although BS is common in Nigeria, to our knowledge, this represents a unique group of X. euvesicatoria strains from tomato that are identical to X. perforans based on pathogenic reactions on tomato and pepper and hrpB2 sequence identity but are more closely related to X. euvesicatoria based on the six housekeeping gene sequences. References: (1) N. F. Almeida et al. Phytopathology 100:208, 2010. (2) E. U. Opara and F. J. Odibo. J. Mol. Genet. 1:35, 2009. (3) J. B. Jones et al. Syst. Appl. Microbiol. 27:755, 2004. (4) A. Obradovic et al. Eur. J. Plant Pathol. 88:736, 2004. (5) R. E. Stall et al. Annu. Rev. Phytopathol. 47:265, 2009.

First Report of Xanthomonas euvesicatoria Causing Bacterial Spot Disease in Pepper in Northwestern Nigeria.

Bacterial spot (BS) has been reported as an important disease on pepper in Nigeria (4). Xanthomonas campestris pv. vesicatoria was identified as the causal agent using phenotypic and pathogenicity tests; however, X. campestris pv. vesicatoria is a synonym for two genetically distinct groups that have been elevated to the species X. euvesicatoria and X. vesicatoria (2). Furthermore, the latter two species and X. gardneri cause similar diseases on pepper (2). In order to determine the species associated with BS on pepper, leaves with irregular, dark brown lesions were collected from pepper plants in fields from northwestern Nigeria, and isolations were made on nutrient agar (NA). Yellow, mucoid colonies typical of Xanthomonas were isolated. Six strains isolated from pepper were determined to be non-amylolytic. For race determinations, bacterial suspensions of the pepper strains, derived from 24-h cultures grown on NA at 28°C, were adjusted to 108 CFU/ml and infiltrated into leaves of tomato and pepper differential genotypes (5). The six pepper strains elicited HRs on the tomato differential genotypes. The strains produced a susceptible reaction on all pepper differentials and were designated as pepper race 6 (5). Multilocus sequence analysis (MLSA) using six housekeeping genes (fusA, lacF, gyrB, gltA, gapA, and lepA) was used to further analyze the strains (1) (GenBank Accession Nos. KJ938585 to KJ938587, KJ938592 to KJ938594, KJ938599 to KJ938601, KJ938606 to KJ938608, KJ938633 to KJ938635, and KJ938640 to KJ938642). A partial sequence of hrpB2 was also sequenced since the four Xanthomonas species associated with BS can be differentiated based on sequence divergence (3) (KJ938622 to KJ938627). The housekeeping gene sequences were aligned along with other Xanthomonas sequences imported from the NCBI database using muscle tool from MEGA software, 5.2.2. Maximum likelihood phylogenetic trees constructed for the six housekeeping gene sequences individually and in concatenation revealed that the Nigerian pepper strains were identical to the X. euvesicatoria reference strain 85-10. Although BS is common in Nigeria, to our knowledge, this represents the first report for this pepper pathogen in Nigeria. References: (1) N. F. Almeida et al. Phytopathology 100:208, 2010. (3) J. B. Jones et al. System Appl. Microbiol. 27:755, 2004. (4) A. Obradovic et al. Eur. J. Plant Pathol. 88:736, 2004. (2) E. U. Opara and F. J. Odibo. J. Mol. Gen. 1:35, 2009. (5) R. E. Stall et al. Ann. Rev. Phytopathol. 47:265, 2009.

First Report of Bacterial Speck of Tomato Caused by Pseudomonas syringae pv. tomato in Tanzania.

In April 2004, there was a serious outbreak of a tomato (Lypersicon esculentum Mill.) leaf spot disease in Mgeta, Mvomero District of Tanzania. The disease was characterized by lesions on green tomato fruits that were small, sunken, and black and were surrounded by darker green haloes. Lesions on ripe tomato fruits were dark brown to black, superficial, and measured approximately 1 to 2 mm in diameter. On the leaves, lesions were small, black, and surrounded by chlorotic (yellow) haloes. In some cases, the specks coalesced to form large lesions on older leaves. Black lesions were also observed on stems and petioles. A disease survey of selected tomato-producing areas in Arusha, Dodoma, Iringa, and Morogoro regions of Tanzania during 2004 and 2005 revealed that the disease was widespread in farmers' fields in all areas surveyed. Disease incidence was approximately 80%, while severity, rated on the scale of Chambers and Merriman (1), ranged from moderate (11 to 40 lesions per plant) to severe (>40 lesions per plant). A bacterium that produced a greenish, diffusible pigment on King's medium B was consistently isolated from lesions on tomato fruits collected from the fields in all the surveyed areas. All 56 isolates obtained were gram negative, oxidase negative, and fluoresced on King's medium B under UV light. None utilized phenylethylamine as the sole carbon source, while three isolates utilized i-erythritol and lactulose. Biolog analysis of the isolates, along with two reference strains of P. syringae pv. tomato (Pst CEP-3 from Sokoine University of Agriculture, Tanzania and Pst BB6 [Race 1] from Göttinger Sammlung Phytopathogener Bakterien, Göttingen, Germany) identified them as P. syringae pv. tomato, with similarity indices of 0.518 to 0.933. They also were positively identified as P. syringae pv. tomato by repetitive sequence-based-PCR (2,3) and fragment length polymorphism analysis. Pathogenicity of the strains was confirmed by spraying 35-day-old tomato seedlings (cv. Tanya) with suspensions of the isolates at a concentration of 108 CFU ml-1 of sterile water. After approximately 72 h, small, water-soaked, dark brown lesions similar to those observed on the field plants were observed on leaves of all the inoculated tomato seedlings. There were no symptoms on control plants. The bacterium was reisolated from the infected plants and identified as P. syringae pv. tomato, in accordance with Koch's postulates. To our knowledge, this is the first report of the occurrence of tomato bacterial speck in Tanzania. References: (1). S. C. Chambers and P. R. Merriman. Aust. J. Agric. Res. 26:657, 1975. (2). F. J. Louws et al. Appl. Environ. Microbiol. 60:2286, 1994. (3). M. Zaccardelli et al. Eur. J. Plant Pathol. 111:85, 2005.