Morphological Differentiation, Yield, and Cutting Time of Lolium multiflorum L. under Acid Soil Conditions in Highlands.

Livestock production in the basins of the northern macro-region of Peru has as its primary source pastures of Lolium multiflorum L. 'Cajamarquino ecotype' (ryegrass CE) in monoculture, or in association with white clover Ladino variety, for feeding. The objective of this research work was the morphological characterisation, yield evaluation, and cutting time evaluation of two local genotypes (LM-58 and LM-43) of Lolium multiflorum L. in six locations. An ANOVA was performed to compare fixed effects and interaction. It was determined that the LM-58 genotype is intermediate, growing semi-erect, with a dark green colouring and 0.8 cm broadleaf, and can reach an average stem length of 46 cm, up to 1.6 cm. day-1, achieving fourth-leaf growth at 28 days under appropriate management conditions. Despite the differentiated characteristics, according to BLASTn evaluation, the ITS1 sequences showed a greater than 99.9% similar identification to Lolium multiflorum L., characterising it as such. It was determined that the LM-58 genotype outperforms LM-43, achieving a forage yield of 4.49 Mg. ha-1, a seed production of 259.23 kg. ha-1, and an average of 13.48% crude protein (CP). The best biomass yield (49.10 Mg. ha-1.yr-1) is reached at 60 days; however, at 30 days, there is a high level of CP (14.84%) and there are no differences in the annual protein production at the cutting age of 60 and 45 days. With the results of the present study, LM-58 from a selection and crossbreeding of 680 ryegrass EC accessions emerges as an elite genotype adapted to the conditions of the northern high Andean zone of Peru.

The complete chloroplast genome of Marupa (Simarouba amara Aubl., Simaroubaceae).

Marupa (Simarouba amara Aublet 1775) is a tropical tree of the family Simaroubaceae. It is commonly used for its wood in the Amazonian forest, and it is an important species for restoring degraded environments. Yet, very little genetic resources are available to study this plant. In this paper, we sequenced for the first time the complete chloroplast genome of Marupa, using Oxford Nanopore long-read technology. The genome is 159,838 bp, includes 131 genes in total and presents a classic quadripartite structure. Its length and structure are similar to those of sister species of the Simaroubaceae family. A maximum likelihood phylogeny of the order Sapindale reveals that Simarouba amara is well positioned in its family. This complete plastome is a first step towards a better analysis of Marupa future evolution.

Agronomic performance of forage corn for cattle feeding in Amazonas, Peru.

Corn (Zea mays) silage is an important and popular feed for dairy production in the Amazon region, so it is necessary to evaluate the agronomic performance of forage varieties of corn for cattle feeding in Amazonas. For this purpose, three corn varieties were evaluated (variety 1: Yellow Starchy Corn, variety 2: Chuska INIA 617, and variety 3: DOW 2B710), with two planting densities (density 1: 30 × 80 cm and density 2: 35 × 75 cm) and two fertilization conditions: with fertilization (F1) and without fertilization (F2). The parameters evaluated were plant height, number of leaves, leaf length and width, stem diameter, fresh forage, and dry matter. Student t-tests, correlation analysis of variables, and principal component analysis using R software version 4.1.3 were used for data analysis. The results indicated that variety 2 obtained the best values for the variables leaf width (12.33 cm) and stem diameter (3.25 cm), fresh forage (17.77 kg/m2), and dry matter (4.8 kg/m2), which would explain the directly proportional correlation found between leaf width and stem diameter with fresh forage and dry matter. The principal component analysis showed constant height and leaf length increases, and the best-evaluated parameters were associated with applying fertilizer. The variety that showed the best agronomic performance under Chachapoyas conditions was Chuska INIA 617, emerging as a potential feed for cattle.

Genetic diversity and population structure of a Peruvian cattle herd using SNP data.

New-generation sequencing technologies, among them SNP chips for massive genotyping, are useful for the effective management of genetic resources. To date, molecular studies in Peruvian cattle are still scarce. For the first time, the genetic diversity and population structure of a reproductive nucleus cattle herd of four commercial breeds from a Peruvian institution were determined. This nucleus comprises Brahman (N = 9), Braunvieh (N = 9), Gyr (N = 5), and Simmental (N = 15) breeds. Additionally, samples from a locally adapted creole cattle, the Arequipa Fighting Bull (AFB, N = 9), were incorporated. Female individuals were genotyped with the GGPBovine100K and males with the BovineHD. Quality control, and the proportion of polymorphic SNPs, minor allele frequency, expected heterozygosity, observed heterozygosity, and inbreeding coefficient were estimated for the five breeds. Admixture, principal component analysis (PCA), and discriminant analysis of principal components (DAPC) were performed. Also, a dendrogram was constructed using the Neighbor-Joining clustering algorithm. The genetic diversity indices in all breeds showed a high proportion of polymorphic SNPs, varying from 51.42% in Gyr to 97.58% in AFB. Also, AFB showed the highest expected heterozygosity estimate (0.41 ± 0.01), while Brahman the lowest (0.33 ± 0.01). Besides, Braunvieh possessed the highest observed heterozygosity (0.43 ± 0.01), while Brahman the lowest (0.37 ± 0.02), indicating that Brahman was less diverse. According to the molecular variance analysis, 75.71% of the variance occurs within individuals, whereas 24.29% occurs among populations. The pairwise genetic differentiation estimates (FST) between breeds showed values that ranged from 0.08 (Braunvieh vs. AFB) to 0.37 (Brahman vs. Braunvieh). Similarly, pairwise Reynold's distance ranged from 0.09 (Braunvieh vs. AFB) to 0.46 (Brahman vs. Braunvieh). The dendrogram, similar to the PCA, identified two groups, showing a clear separation between Bos indicus (Brahman and Gyr) and B. taurus breeds (Braunvieh, Simmental, and AFB). Simmental and Braunvieh grouped closely with the AFB cattle. Similar results were obtained for the population structure analysis with K = 2. The results from this study would contribute to the appropriate management, avoiding loss of genetic variability in these breeds and for future improvements in this nucleus. Additional work is needed to speed up the breeding process in the Peruvian cattle system.

Characterization of Coffea arabica L. parent plants and physicochemical properties of associated soils, Peru.

It is important to carry out the morphological characterization of coffee parent plants and the physicochemical properties of the associated soils in the Amazon region, Peru, in order to achieve germplasm conservation. One hundred coffee mother plants were identified and located in five provinces of the region and evaluated according to morphological descriptors such as stipula shape, young leaf color, leaf shape, leaf apex shape, young shoot color, leaf color, fruit color, fruit shape, mature leaf color, and rust incidence percentage. In the plots where the parent plants were located, soil sampling was carried out to determine the physical and chemical properties. The varieties with the greatest presence in the five provinces were Típica and caturra roja, with the greatest number of specimens reported for the province of Bagua. The predominant stipule shape was triangular (91%), lanceolate leaf shape (60%) and red fruit color (90%). Bongará reported the lowest incidence of yellow rust, as well as the Mundo Novo Rojo variety. Soil pH ranged from acidic to neutral values, low electrical conductivity, high organic matter content, low phosphorus content, high potassium levels and medium cation exchange capacity. The predominant textural class was sandy loam. The physical and chemical characterization of the soils under study show favorable ranges to encourage the best development of coffee cultivation.

Unlocking the Complete Chloroplast Genome of a Native Tree Species from the Amazon Basin, Capirona (Calycophyllum Spruceanum, Rubiaceae), and Its Comparative Analysis with Other Ixoroideae Species.

Capirona (Calycophyllum spruceanum Benth.) belongs to subfamily Ixoroideae, one of the major lineages in the Rubiaceae family, and is an important timber tree. It originated in the Amazon Basin and has widespread distribution in Bolivia, Peru, Colombia, and Brazil. In this study, we obtained the first complete chloroplast (cp) genome of capirona from the department of Madre de Dios located in the Peruvian Amazon. High-quality genomic DNA was used to construct libraries. Pair-end clean reads were obtained by PE 150 library and the Illumina HiSeq 2500 platform. The complete cp genome of C. spruceanum has a 154,480 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (84,813 bp) and a small single-copy (SSC) region (18,101 bp), separated by two inverted repeat (IR) regions (25,783 bp). The annotation of C. spruceanum cp genome predicted 87 protein-coding genes (CDS), 8 ribosomal RNA (rRNA) genes, 37 transfer RNA (tRNA) genes, and one pseudogene. A total of 41 simple sequence repeats (SSR) of this cp genome were divided into mononucleotides (29), dinucleotides (5), trinucleotides (3), and tetranucleotides (4). Most of these repeats were distributed in the noncoding regions. Whole chloroplast genome comparison with the other six Ixoroideae species revealed that the small single copy and large single copy regions showed more divergence than inverted regions. Finally, phylogenetic analyses resolved that C. spruceanum is a sister species to Emmenopterys henryi and confirms its position within the subfamily Ixoroideae. This study reports for the first time the genome organization, gene content, and structural features of the chloroplast genome of C. spruceanum, providing valuable information for genetic and evolutionary studies in the genus Calycophyllum and beyond.

The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae).

Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (27,502 bp). The total GC content was 37.75%. Quina tree chloroplast genome possesses 135 genes that consisted of 89 protein-coding genes, 37 tRNA, eight rRNA, and one pseudogene. Phylogenetic analysis showed that C. officinalis is sister to C. pubescens and sister to them is Isertia laevis; all belong to the Cinchonoideae sub-family.

Influence of arboreal components on the physical-chemical characteristics of the soil under four silvopastoral systems in northeastern Peru.

Silvopastoral systems (SPS) are presented as an alternative for the protection and recovery of soils; however, the relationship between the tree component and the physical-chemical characteristics of the soil is unknown. Thus, the objective of this study was to evaluate the physical-chemical characteristics of the soil under four silvopastoral systems (SPS), alder (Alnus acuminata), pine (Pinus patula), cypress (Cupressus macrocarpa), and pona (Ceroxylon quindiuense), and a treeless system (TS) in the Amazonas region. A completely randomized design (CRD) with five treatments and three replicates was used. The experimental units were sampled at two depths, 0-15 and 15-30 cm. The parameters evaluated were pH, electrical conductivity (dS/m), organic matter (%), phosphorus (ppm), potassium (ppm), cation exchange capacity (meq/100 g), porosity (%), mechanical resistance (kg/cm2), bulk density (gr/cm3), moisture (%) and total carbon (t/ha). The results were analyzed by analysis of variance (α = 0.05 %) and Tukey's test of means (p ≤ 0.05). The systems presented strong acidic pH values (4.11-5.61), which resulted in high organic matter contents in all systems (6.74-9.99 %). The highest phosphorus content was in the SPS with alder (12.64 ppm), and the highest potassium content was in the SPS with cypress (382.33 ppm). Porosity in all systems was higher than 60 %. The highest bulk density was between 15 and 30 cm, and the highest percentage of moisture was in the surface layer (0-15 cm). The mechanical strength was higher in the SPS with cypress (2.62 kg/cm2). For all the systems evaluated, the highest carbon stock was found in the first 15 cm. The SPS with pine had the best soil characteristics and carbon sequestration (149.05 t/ha).

Mitochondrial DNA Variation in Peruvian Honey Bee (Apis mellifera L.) Populations Using the tRNAleu-cox2 Intergenic Region.

Mitochondrial DNA variations of Peruvian honey bee populations were surveyed by using the tRNAleu-cox2 intergenic region. Only two studies have characterized these populations, indicating the presence of Africanized honey bee colonies in different regions of Peru and varied levels of Africanization, but the current status of its genetic diversity is unknown. A total of 512 honey bee colonies were sampled from three regions to characterize them. Our results revealed the presence of European and African haplotypes: the African haplotypes identified belong to sub-lineage AI (13) and sub-lineage AIII (03), and the European haplotypes to lineages C (06) and M (02). Of 24 haplotypes identified, 15 new sequences are reported here (11 sub-lineage AI, 2 sub-lineage AIII, and 2 lineage M). Peruvian honey bee populations presented a higher proportion from African than European haplotypes. High proportions of African haplotype were reported for Piura and Junín, unlike Lima, which showed more European haplotypes from lineage C. Few colonies belonging to lineage M would represent accidental purchase or traces of the introduction into Peru in the 19th century.

Producción de leche real vs la calculada a partir de la ENL estimada por el algoritmo de análisis de imágenes red-green-blue de gramíneas / Produção real de leite vs produção de leite calculada a partir da energía líquida de lactação estimada pelo algoritmo para análise de imagens vermelho-verde-azul de gramíneas

ABSTRACT: Knowledge about the net lactation energy (NLE) contained in the dry matter of grasses is necessary to make decisions about forage and the balance of diets for grazing cattle. Its determination is made in laboratories using wet or dry chemistry methods, which are costly, delayed, and sometimes present sampling- or process-related reliability problems. An algorithm, which analyzes the red-green-blue (RGB) images of grasses taken by drone, has been developed as a technological alternative. This has allowed us estimating the NLE level, reducing costs, and changing the sampling system and analysis method. The objective of the present study was to compare the milk production, which was calculated from the NLE and estimated using the algorithm for analysis of RGB images of grasses (included in the TaurusWebs® software), vs the actual milk production. The study was conducted in 15 dairy farms belonging to the dairy control system of the Colácteos dairy cooperative, which are located in the upper tropical region (Department of Nariño, Colombia). The prairies evaluated were composed of mixtures of Kikuyo (Pennisetum clandestinum), Raigrás (Lolium spp), and False Poa (Holcus lanatus). The result was analyzed using a linear regression model (R²=0.86; R=0.93). In the Student´s t-test, the actual and estimated milk production averages were equal (P>0.05). In conclusion, the NLE calculated using the algorithm satisfactorily explains the study livestock production, and the information generated by the algorithm can be used to calculate the NLE of grasses.

RESUMO: O conhecimento sobre a energia líquida de lactação (NLE) contida na matéria seca das gramíneas é necessário para a tomada de decisões sobre forragem e o equilíbrio das dietas para pastagem. Sua determinação é feita em laboratórios usando métodos de química úmida ou seca, que são dispendiosos, atrasados e às vezes apresentam problemas de confiabilidade relacionados a amostras ou processos. Um algoritmo, que avalia as imagens vermelho-verde-azul (RGB) de gramíneas tiradas por drone, foi desenvolvido como uma alternativa tecnológica. Isso nos permitiu estimar o nível de NLE, reduzir custos e alterar o sistema de amostragem e o método de análise. O objetivo do presente estudo foi comparar a produção de leite, calculada a partir do NLE e estimada usando o algoritmo para análise de imagens RGB de gramíneas (incluídas no software TaurusWebs®) versus a produção real de leite. O estudo foi realizado em 15 fazendas leiteiras pertencentes ao sistema de controle de laticínios da cooperativa de laticínios Colácteos, localizada na região tropical superior (Departamento de Nariño, Colômbia). As pradarias avaliadas foram compostas por misturas de Kikuyo (Pennisetum clandestinum), Raigrás (Lolium spp) e False Poa (Holcus lanatus). O resultado foi analisado usando um modelo de regressão linear (R² = 0,86; R = 0,93). No teste t de Student, as médias reais e estimadas de produção de leite foram iguais (P> 0,05). Em conclusão, o NLE calculado usando o algoritmo explica satisfatoriamente a produção animal estudada, e as informações geradas pelo algoritmo podem ser usadas para calcular o NLE das gramíneas.

Analog control with two Artificial Axons.

The artificial axon is a recently introduced synthetic assembly of supported lipid bilayers and voltage gated ion channels, displaying the basic electrophysiology of nerve cells. Here we demonstrate the use of two artificial axons as control elements to achieve a simple task. Namely, we steer a remote control car towards a light source, using the sensory input dependent firing rate of the axons as the control signal for turning left or right. We present the result in the form of the analysis of a movie of the car approaching the light source. In general terms, with this work we pursue a constructivist approach to exploring the nexus between machine language at the nerve cell level and behavior.