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1.
Sci Rep ; 14(1): 8560, 2024 04 12.
Artigo em Inglês | MEDLINE | ID: mdl-38609443

RESUMO

Metagenomics has revolutionized access to genomic information of microorganisms inhabiting the gut of herbivorous animals, circumventing the need for their isolation and cultivation. Exploring these microorganisms for novel hydrolytic enzymes becomes unattainable without utilizing metagenome sequencing. In this study, we harnessed a suite of bioinformatic analyses to discover a novel cellulase-degrading enzyme from the camel rumen metagenome. Among the protein-coding sequences containing cellulase-encoding domains, we identified and subsequently cloned and purified a promising candidate cellulase enzyme, Celcm05-2, to a state of homogeneity. The enzyme belonged to GH5 subfamily 4 and exhibited robust enzymatic activity under acidic pH conditions. It maintained hydrolytic activity under various environmental conditions, including the presence of metal ions, non-ionic surfactant Triton X-100, organic solvents, and varying temperatures. With an optimal temperature of 40 °C, Celcm05-2 showcased remarkable efficiency when deployed on crystalline cellulose (> 3.6 IU/mL), specifically Avicel, thereby positioning it as an attractive candidate for a myriad of biotechnological applications spanning biofuel production, paper and pulp processing, and textile manufacturing. Efficient biodegradation of waste paper pulp residues and the evidence of biopolishing suggested that Celcm05-2 can be used in the bioprocessing of cellulosic craft fabrics in the textile industry. Our findings suggest that the camel rumen microbiome can be mined for novel cellulase enzymes that can find potential applications across diverse biotechnological processes.


Assuntos
Celulase , Microbiota , Animais , Metagenoma , Camelus , Celulase/genética , Celulose
2.
Small ; 20(26): e2306974, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38247174

RESUMO

Adaptive laboratory evolution (ALE) can be used to make bacteria less susceptible to oxidative stress. An alternative to large batch scale ALE cultures is to use microfluidic platforms, which are often more economical and more efficient. Microfluidic ALE platforms have shown promise, but many have suffered from subpar cell passaging mechanisms and poor spatial definition. A new approach is presented using a microfluidic Evolution on a Chip (EVoc) design which progressively drives microbial cells from areas of lower H2O2 concentration to areas of higher concentration. Prolonged exposure, up to 72 h, revealed the survival of adaptive strains of Lacticaseibacillus rhamnosus GG, a beneficial probiotic often included in food products. After performing ALE on this microfluidic platform, the bacteria persisted under high H2O2 concentrations in repeated trials. After two progressive exposures, the ability of L. rhamnosus to grow in the presence of H2O2 increased from 1 mm H2O2 after a lag time of 31 h to 1 mm after 21 h, 2 mm after 28 h, and 3 mm after 42 h. The adaptive strains have different morphology, and gene expression compared to wild type, and genome sequencing revealed a potentially meaningful single nucleotide mutation in the protein omega-amidase.


Assuntos
Peróxido de Hidrogênio , Lacticaseibacillus rhamnosus , Microfluídica , Estresse Oxidativo , Probióticos , Estresse Oxidativo/efeitos dos fármacos , Peróxido de Hidrogênio/farmacologia , Peróxido de Hidrogênio/química , Peróxido de Hidrogênio/metabolismo , Lacticaseibacillus rhamnosus/metabolismo , Microfluídica/métodos , Evolução Molecular Direcionada/métodos
3.
Lab Chip ; 24(2): 210-223, 2024 01 17.
Artigo em Inglês | MEDLINE | ID: mdl-37990939

RESUMO

To understand the impact of sperm speed as they swim against the flow on fertilization rates, we created conditions similar to the female reproductive tract (FRT) on a microfluidic platform for sperm selection. Selected sperm were evaluated based on early development of fertilized embryos. Bovine and human spermatozoa were selected at various fluid flow rates within the device. We found that the speed of bovine spermatozoa increases as the flow rate increases and that the amount of DNA fragmentation index is lowered by increasing the flow rate. Bovine spermatozoa selected by our platform at low (150 µL h-1, shear rate 3 s-1), medium (250 µL h-1, shear rate 5 s-1), and high flow rates (350 µL h-1, shear rate 7 s-1) were used for fertilization and compared to sperm sorted by centrifugation. The samples collected at the highest flow rate resulted in the formation of 23% more blastocysts compared to the control. While selecting for higher quality sperm by increasing the flow rate does result in lower sperm yield, quality improvement and yield may be balanced by better embryonic development.


Assuntos
Fertilização in vitro , Sêmen , Gravidez , Masculino , Bovinos , Animais , Feminino , Humanos , Desenvolvimento Embrionário , Espermatozoides , Motilidade dos Espermatozoides
4.
Eur J Gastroenterol Hepatol ; 35(11): 1253-1262, 2023 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-37773777

RESUMO

Both computed tomography enterography (CTE) and video capsule endoscopy (VCE) are used in identifying small intestinal pathology in patients with suspected small bowel bleeding (SSBB) following normal upper gastrointestinal endoscopy and colonoscopy. Evidence of the comparative accuracy of these two modalities is crucial for clinical and healthcare decision-making. Comprehensive electronic searches were performed for studies on CTE and/or VCE with reference standard(s). Study selection, data extraction and quality assessment were completed by two authors independently. The QUADAS-2 and QUADAS-C tools were used to assess risk of bias, and applicability. Meta-analysis was performed using a bivariate model to obtain summary estimates of sensitivity, specificity, positive and negative likelihood ratios. Twenty-five studies involving 1986 patients with SSBB were included. Four of these were head-to-head comparison of CTE and VCE. Overall, VCE provided significantly higher sensitivity of 0.74 (95% CI: 0.61-0.83) versus 0.47 (95% CI: 0.32-0.62) for CTE, while CTE showed significantly higher specificity of 0.94 (95% CI: 0.64-0.99) versus 0.53 (95% CI: .36-0.69) for VCE. The positive likelihood ratio of CTE was 7.36 (95% CI: 0.97-56.01) versus 1.58 (95% CI: 1.15-2.15) for VCE and the negative likelihood ratio was 0.49 (95% CI: 0.33-0.72) for VCE versus 0.56 (0.40-0.79) for CTE. A secondary analysis of only head-to-head comparative studies gave results that were similar to the main analysis. Certainty of evidence was moderate. Neither VCE nor CTE is a perfect test for identifying etiology of SSBB in small intestine. VCE was more sensitive while CTE was more specific. Clinicians should choose the appropriate modality depending on whether better sensitivity or specificity is required in each clinical scenario.


Assuntos
Endoscopia por Cápsula , Humanos , Endoscopia por Cápsula/métodos , Intestino Delgado/diagnóstico por imagem , Tomografia Computadorizada por Raios X , Colonoscopia/efeitos adversos , Hemorragia Gastrointestinal/diagnóstico por imagem , Hemorragia Gastrointestinal/etiologia , Testes Diagnósticos de Rotina/efeitos adversos
5.
Food Hydrocoll ; 1452023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37545760

RESUMO

Effective delivery of the bioactive protein, lactoferrin (LF), remains a challenge as it is sensitive to environmental changes and easily denatured during heating, restricting its application in functional food products. To overcome these challenges, we formulated novel polyelectrolyte ternary complexes of LF with gelatin (G) and negatively charged polysaccharides, to improve the thermal stability of LF with retained antibacterial activity. Linear, highly charged polysaccharides were able to form interpolymeric complexes with LF and G, while coacervates were formed with branched polysaccharides. A unique multiphase coacervate was observed in the gum Arabic GA-LF-G complex, where a special coacervate-in-coacervate structure was found. The ternary complexes made with GA, soy soluble polysaccharide (SSP), or high methoxyl pectin (HMP) preserved the protein structures and demonstrated enhanced thermal stability of LF. The GA-LF-G complex was especially stable with >90% retention of the native LF after treatment at 90 °C for 2 min in a water bath or at 145 °C for 30 s, while the LF control had only ~ 7% undenatured LF under both conditions. In comparison to untreated LF, LF in ternary complex retained significant antibacterial activity on both Gram-positive and Gram-negative bacteria, even after heat treatment. These ternary complexes of LF maintain the desired functionality of LF, thermal stability and antibacterial activity, in the final products. The ternary complex structure, particularly the multiphase coacervate, may serve as a template for the encapsulation and stabilization of other bioactives and peptides.

6.
Middle East J Dig Dis ; 15(1): 5-11, 2023 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37547158

RESUMO

Background: Studies on the use of fecal immunochemical test (FIT) in colorectal screening have long assumed perfect accuracy for colonoscopy. No study to date has directly compared the diagnostic accuracy of colonoscopy and FIT to detect advanced neoplasia (AN) in a head-to-head diagnostic accuracy meta-analysis. Methods: A comprehensive electronic search was performed for a head-to-head comparison of FIT and colonoscopy using a third acceptable reference standard in asymptomatic adults. Cochrane methodology was used to perform a head-to-head diagnostic test accuracy (DTA) meta-analysis. Quality assessment tool for diagnostic accuracy studies-2 (QUADAS-2) was used to assess the risk of bias in included studies. Results: Two studies met the eligibility criteria. Overall sensitivity and specificity were 98.5 (95% CI 96.3-100%) and 100% (99.9-100%) for colonoscopy and 16.4% (10.3-22.6%) and 95.4% (94.3-96.4%) for FIT. Colonoscopy was significantly better than FIT (P < 0.0001). The positive and negative likelihood ratios (LRs) were 1.75 (1.57-1.96) and 0.03 (0.01-0.08) for colonoscopy and 3.02 (2.01-4.55) and 0.88 (0.82-0.95) for FIT, respectively. Conclusion: Colonoscopy provides significantly better diagnostic accuracy to detect AN compared with FIT (GRADE: ⨁⨁◯◯). Our study provided precise sensitivity and specificity of both colonoscopy and FIT and a revision in screening policies based on an updated cost-effectiveness analysis considering the results of the head-to-head analysis.

7.
ACG Case Rep J ; 10(5): e00951, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-37180462
8.
Caspian J Intern Med ; 14(2): 391-395, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37223284

RESUMO

Background: Appendiceal mucocele (AM) is a rare disease, manifested by accumulation of mucus in appendiceal lumen. The role of ulcerative colitis (UC) in the occurrence of appendiceal mucocele is not known. However, it is suggested that AM may be a presentation of colorectal cancer in IBD patients. Case Presentation: Here, we presented 3 cases of concomitant AM and ulcerative colitis. The first patient was a 55-year-old woman with 2-year history of left sided UC; the second person was a 52-year-old woman with 12-year history of pan-UC; and the third patient was a 60-year-old man with 11-year history of pan-colitis. They were all referred due to indolent right lower quadrant abdominal pain. Imaging evaluations suggested the presence of appendiceal mucocele and therefore, they all went under operation. Pathologic evaluation reported AM of mucinous cyst adenoma type; low-grade appendiceal mucinous neoplasm of appendix with intact serosa; and cyst-adenoma type AM for the three above-mentioned patients, respectively. Conclusion: Although concomitant occurrence of AM and ulcerative colitis is rare, regarding the potential of neoplastic changes in AM, physicians must keep in mind the diagnosis of AM in UC patients with non-specific abdominal RLQ pain or bulged appendiceal orifice during colonoscopy.

9.
ACS Appl Mater Interfaces ; 14(51): 57371-57386, 2022 Dec 28.
Artigo em Inglês | MEDLINE | ID: mdl-36533671

RESUMO

Although incredible progress in the field of Janus particles over the last three decades has delivered many promising smart-material prototypes, from cancer-targeting drug delivery vehicles to self-motile nanobots, their real-world applications have been somewhat tempered by concerns over scalability and sustainability. In this study, we adapt a simple, scalable 3D mask method to synthesize Janus particles in bulk using starch as the base material: a natural biopolymer that is safe, biocompatible, biodegradable, cheap, widely available, and versatile. Using this method, starch granules are first embedded on a wax droplet such that half of the starch is covered; then, the uncovered half is treated with octenyl succinic anhydride, after which the wax coating is removed. Janus particles with 49% Janus balance can be produced in this way and were observed to self-assemble into wormlike strings in water due to their hydrophobic/hydrophilic nature. Our Janus starch granules outperform the non-Janus controls as thickening and gelling agents: they exhibit a fourfold increase in water-holding capacity, a 30% lower critical caking concentration, and a viscosity greater by orders of magnitude. They also form gels that are much firmer and more stable. Starch Janus particles with these functional properties can be used as novel, lower-calorie, highly efficient, plant-based super-thickeners in the food industry, potentially reducing starch use in food by 55%.


Assuntos
Nanopartículas Multifuncionais , Amido , Viscosidade , Reologia , Água
10.
PLoS One ; 17(8): e0272294, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35960726

RESUMO

Physicochemical conditions play a key role in the development of biofilm removal strategies. This study presents an integrated, double-layer, high-throughput microfluidic chip for real-time screening of the combined effect of antibiotic concentration and fluid shear stress (FSS) on biofilms. Biofilms of Escherichia coli LF82 and Pseudomonas aeruginosa were tested against gentamicin and streptomycin to examine the time dependent effects of concentration and FSS on the integrity of the biofilm. A MatLab image analysis method was developed to measure the bacterial surface coverage and total fluorescent intensity of the biofilms before and after each treatment. The chip consists of two layers. The top layer contains the concentration gradient generator (CGG) capable of diluting the input drug linearly into four concentrations. The bottom layer contains four expanding FSS chambers imposing three different FSSs on cultured biofilms. As a result, 12 combinatorial states of concentration and FSS can be investigated on the biofilm simultaneously. Our proof-of-concept study revealed that the reduction of E. coli biofilms was directly dependent upon both antibacterial dose and shear intensity, whereas the P. aeruginosa biofilms were not impacted as significantly. This confirmed that the effectiveness of biofilm removal is dependent on bacterial species and the environment. Our experimental system could be used to investigate the physicochemical responses of other biofilms or to assess the effectiveness of biofilm removal methods.


Assuntos
Escherichia coli , Dispositivos Lab-On-A-Chip , Antiácidos , Antibacterianos/farmacologia , Biofilmes , Penicilinas/farmacologia , Pseudomonas aeruginosa
11.
Sci Rep ; 12(1): 10868, 2022 Jun 27.
Artigo em Inglês | MEDLINE | ID: mdl-35760843

RESUMO

The magnetic actuation of ferrofluid droplets offers an inspiring tool in widespread engineering and biological applications. In this study, the dynamics of ferrofluid droplet generation with a Drop-on-Demand feature under a non-uniform magnetic field is investigated by multiscale numerical modeling. Langevin equation is assumed for ferrofluid magnetic susceptibility due to the strong applied magnetic field. Large and small computational domains are considered. In the larger domain, the magnetic field is obtained by solving Maxwell equations. In the smaller domain, a coupling of continuity, Navier Stokes, two-phase flow, and Maxwell equations are solved by utilizing the magnetic field achieved by the larger domain for the boundary condition. The Finite volume method and coupling of level-set and Volume of Fluid methods are used for solving equations. The droplet formation is simulated in a two-dimensional axisymmetric domain. The method of solving fluid and magnetic equations is validated using a benchmark. Then, ferrofluid droplet formation is investigated experimentally, and the numerical results showed good agreement with the experimental data. The effect of 12 dimensionless parameters, including the ratio of magnetic, gravitational, and surface tension forces, the ratio of the nozzle and magnetic coil dimensions, and ferrofluid to continuous-phase properties ratios are studied. The results showed that by increasing the magnetic Bond number, gravitational Bond number, Ohnesorge number, dimensionless saturation magnetization, initial magnetic susceptibility of ferrofluid, the generated droplet diameter reduces, whereas the formation frequency increases. The same results were observed when decreasing the ferrite core diameter to outer nozzle diameter, density, and viscosity ratios.

12.
ACS Appl Mater Interfaces ; 14(21): 24955-24963, 2022 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-35588470

RESUMO

Starch, as a staple carbohydrate, is frequently used as a thickener to enhance food texture. As such, there is an increasing interest in studying starch modification to improve its thickening ability. Instead of the conventional mechanism of swelling-based thickening, the present work presents an alternative using starch-based patchy particles as a texturizer prepared through a bottom-up method by physically grafting small amaranth starch granules (∼1 µm) onto corn starch granules (>10 µm). After thermal treatment in aqueous ethanol, starches were partially gelatinized, and the particle stiffness was reduced. The corn starch and amaranth starch were modified to carry a negative charge and a positive charge, respectively. The hydrated swollen starch granules were centrifuged and dehydrated, which stitched particles together, forming a corona-shaped patchy structure with a negatively charged core and positively charged patches. The electrostatic interaction allowed particles to associate, and the pockets created in the flocs were able to trap more water. The enhanced water-holding capacity consequently contributed to a significantly higher storage modulus, loss modulus, and viscosity compared to the native starch and the mixed charged starch with the same blending ratio between amaranth and corn starch. The enhanced viscoelasticity was not affected by cooking and mechanical stress, which could be used as a shear-reversible thickener to modify texture with less raw ingredients, thus helping to reduce the amount of energy-dense starch in diets. This is the first time that the concept of patchy particles has been extended to food-grade ingredients with a facile and scalable method.


Assuntos
Nanopartículas Multifuncionais , Amido , Amido/química , Viscosidade , Água , Zea mays/química
13.
J Can Assoc Gastroenterol ; 5(2): 68-78, 2022 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-35368320

RESUMO

Background: Plastic stents (PS), lumen-apposing metal stents (LAMS) and biflanged metal stents (BFMS) are used for initial drainage of pancreatic walled-off necrosis (WON). There are no strong evidence to support the use of LAMS/BFMS over PS, and prior systematic reviews lack comparative analyses and also lack both trial data and observational studies for WON efficacy outcomes. The aim of this study is to compare the efficacy and adverse events (AEs) in LAMS/BFMS versus PS in patients with pancreatic WON. Methods: A comprehensive search up to December 1, 2020, was performed. The primary outcome was clinical improvement after drainage. Secondary outcomes included AEs and technical failure. Pooled odds ratios (OR) with 95% confidence intervals (CI) were reported using random effects models. Heterogeneity was evaluated with the Cochrane I 2 statistic. Subgroup and sensitivity analyses were performed. The quality of the evidence was assessed using Grading of Recommendations, Assessment, Development and Evaluations (GRADE). Results: Nine studies (one randomized controlled trial and eight observational) were included for the primary outcome including 493 patients treated with LAMS/BFMS and 514 with PS. LAMS/BFMS were associated with higher odds of clinical improvement compared with PS (OR 2.58; 95% CI 1.81, 3.68; I 2 = 1%). This association remained robust in sensitivity analyses. The use of LAMS/BFMS was not associated with higher AEs (OR 1.22; 0.61, 2.46; I 2 = 71%). There was no difference in technical failure (OR 1.06; 0.19, 6.00; I 2 = 12%). Conclusions: LAMS/BFMS seem to result in better clinical outcomes compared with PS in patients with pancreatic WON, with comparable AEs and technical failure. Larger randomized controlled trials for this comparison are warranted.

14.
Lab Chip ; 22(8): 1486-1497, 2022 04 12.
Artigo em Inglês | MEDLINE | ID: mdl-35319557

RESUMO

The female reproductive tract simultaneously guides and selects high-quality sperm using rheotaxis in mammalian species. Sperm quality, however, is traditionally evaluated only by their movement velocities and concentration using computer-assisted sperm analysis (CASA), which ignores sperm rheotaxis. Here, by mimicking the female reproductive tracts' dimensions and hydrodynamic features, a new method is introduced to quantify sperm rheotaxis ability for evaluating semen quality. The combination of our RHEOtaxis quaLity indEX (RHEOLEX) and motile sperm concentration is able to predict sperm fertility levels in artificial insemination at various shear rates within 5 minutes. This means that RHEOLEX could be a biomarker for determining male in vivo fertility, unlike conventional semen quality parameters which fail to provide statistically significant predictions. In addition, a high RHEOLEX is associated with a low DNA fragmentation index (DFI), showing that this new parameter is able to identify low-DFI samples. Not only does this work highlight the importance of rheotaxis in determining male in vivo fertility, but it also provides a solid benchmark for developing fast microfluidic devices for male fertility prediction as well as DFI. Last, the data imply that the female reproductive tract might use rheotaxis to keep sperm with fragmented DNA from reaching the fertilization site.


Assuntos
Análise do Sêmen , Motilidade dos Espermatozoides , Animais , Fragmentação do DNA , Feminino , Fertilidade , Masculino , Mamíferos , Análise do Sêmen/métodos , Espermatozoides
15.
PLoS One ; 17(3): e0265351, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35290401

RESUMO

Genetics play a prominent role in the development and progression of malignant neoplasms. Identification of the relevant genes is a high-dimensional data processing problem. Pyramid gravitational search algorithm (PGSA), a hybrid method in which the number of genes is cyclically reduced is proposed to conquer the curse of dimensionality. PGSA consists of two elements, a filter and a wrapper method (inspired by the gravitational search algorithm) which iterates through cycles. The genes selected in each cycle are passed on to the subsequent cycles to further reduce the dimension. PGSA tries to maximize the classification accuracy using the most informative genes while reducing the number of genes. Results are reported on a multi-class microarray gene expression dataset for breast cancer. Several feature selection algorithms have been implemented to have a fair comparison. The PGSA ranked first in terms of accuracy (84.5%) with 73 genes. To check if the selected genes are meaningful in terms of patient's survival and response to therapy, protein-protein interaction network analysis has been applied on the genes. An interesting pattern was emerged when examining the genetic network. HSP90AA1, PTK2 and SRC genes were amongst the top-rated bottleneck genes, and DNA damage, cell adhesion and migration pathways are highly enriched in the network.


Assuntos
Redes Reguladoras de Genes , Neoplasias , Algoritmos , Perfilação da Expressão Gênica/métodos , Humanos , Neoplasias/genética
16.
Lab Chip ; 22(4): 777-792, 2022 02 15.
Artigo em Inglês | MEDLINE | ID: mdl-35075469

RESUMO

Cumulus removal (CR) is a central prerequisite step for many protocols involved in the assisted reproductive technology (ART) such as intracytoplasmic sperm injection (ICSI) and preimplantation genetic testing (PGT). The most prevalent CR technique is based upon laborious manual pipetting, which suffers from inter-operator variability and therefore a lack of standardization. Automating CR procedures would alleviate many of these challenges, improving the odds of a successful ART or PGT outcome. In this study, a chip-scale ultrasonic device consisting of four interdigitated transducers (IDT) on a lithium niobate substrate has been engineered to deliver megahertz (MHz) range ultrasound to perform denudation. The acoustic streaming and acoustic radiation force agitate COCs inside a microwell placed on top of the LiNbO3 substrate to remove the cumulus cells from the oocytes. This paper demonstrates the capability and safety of the denudation procedure utilizing surface acoustic wave (SAW), achieving automation of this delicate manual procedure and paving the steps toward improved and standardized oocyte manipulation.


Assuntos
Oócitos , Injeções de Esperma Intracitoplásmicas , Células do Cúmulo , Feminino , Humanos , Gravidez , Taxa de Gravidez , Som
17.
Middle East J Dig Dis ; 14(4): 382-395, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37547494

RESUMO

Background: Fecal immunoglobulin test (FIT) has been advocated as the first line of screening for colorectal cancer (CRC) in several jurisdictions. Most studies have focused on CRC as the outcome of interest. Our goal was to quantify the diagnostic accuracy of different thresholds of FIT as compared with colonoscopy for detection of advanced colonic neoplasia and potential modifiers using proper Cochrane methodology. Methods: A comprehensive electronic search was performed for studies on FIT using colonoscopy as the reference standard to detect advanced neoplasia. Cochrane methodology was used to perform a diagnostic test accuracy (DTA) meta-analysis. Diagnostic accuracy of different cut-offs of FIT, including 25, 50, 75, 100, 150, and 200 ng/mL, were calculated separately. Meta-regression analysis was also performed to detect potential a priori modifiers, including age, location of the tumor, and time from FIT to colonoscopy. Results: Twenty-four studies were included with no evidence of publication bias. The sensitivity of FIT did not decrease with lowering the cut-off, although specificity increased in higher cut-offs. Commonly used cut-offs of 50 ng/mL, 75 ng/mL, and 100 ng/mL for FIT provided sensitivity of 39%, 36%, 27% and specificity of 92%, 94%, 96%, respectively. Diagnostic accuracy of FIT did not significantly differ in proximal versus distal lesions or in individuals below or over the age of 50 years. The results remained robust in a meta-regression of the location of the study, time from FIT to colonoscopy, and methodological quality. Conclusion: The sensitivity of FIT might have been overestimated in previous studies focusing on CRC, and it seems to be independent of age, location of neoplasia, or cut-offs, contrary to some previous studies. Lowering the cut-off will reduce the diagnostic odds ratio (DOR) by increasing specificity but without any effect on sensitivity.

18.
Lab Chip ; 21(14): 2791-2804, 2021 07 21.
Artigo em Inglês | MEDLINE | ID: mdl-34105565

RESUMO

Motility is one of the most important factors in sperm migration toward an egg. Therefore, sperm separation based on motility might enhance sperm selection for infertility treatments. Conventional centrifugation-based methods increase the risk of damage to sperm cells. Microfluidic systems, on the other hand, can sort sperm in a less intrusive way, but their efficiency and throughput still needs improvement, especially in low-concentration samples (oligozoospermia). Here, a microchamber-based microfluidic platform is demonstrated that can separate progressively motile sperm from non-viable sperm and debris, and trap nonprogressive sperm in microchambers. This platform can be operated in a short period of time (<10 min) with an excellent degree of controllability with no sample preparation. Sperm were screened in a 384-microchamber platform. The mean average-path velocity of the motile sperm in the collected sample increased significantly, from 57 ± 10 µm s-1 in the raw semen sample to 81 ± 13 µm s-1. The DNA Integrity of the separated sperm showed 20% improvement over the raw sample which indicated that separated sperm were of higher quality. We began with a 22.5 µL raw bovine sperm sample which had a concentration of 8.5 million sperm per milliliter (M mL-1) with 38% motility. After separation, the concentration of the collected sperm was 2.1 M mL-1 with a motility rate of 90%. This corresponds to a 75% retrieval efficiency and the selection of approximately 5.2 × 104 progressively motile spermatozoa. Our results show that the microchamber depth does not affect the residence time of motile sperm; therefore, it is possible to inspect higher sample volumes within the same time frame. This microfluidic platform may provide an easy-to-implement solution for high-throughput, robust, and efficient, collection of progressive sperm with the DNA integrity needed for assisted reproductive technologies (ARTs). However, further studies are necessary to show the implications of this method in human cases.


Assuntos
Microfluídica , Motilidade dos Espermatozoides , Animais , Bovinos , Separação Celular , Humanos , Masculino , Espermatozoides
19.
J Can Assoc Gastroenterol ; 4(3): 125-130, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-34056530

RESUMO

INTRODUCTION: N-acetylcysteine (NAC) has been extensively investigated for the use in acetaminophen and alcoholic hepatitis and is indicated in acetaminophen overdose. Studies assessing the effect of NAC on other forms of acute hepatitis in adult patients are limited and therefore here we aimed at evaluating the effect of NAC on survival in nonacetaminophen, nonalcoholic and nonviral hepatitis in adults. METHODS: A comprehensive literature search up to September 2019 was completed for randomized controlled trials (RCTs) comparing NAC to placebo in the management of acute nonacetaminophen, nonalcoholic and nonviral hepatitis. Studies with insufficient data, non-RCT or nonprospective design, paediatric studies and studies with no comparator were excluded. Study selection, quality assessment and data extraction were independently performed by two co-authors. Primary outcome was survival. Secondary outcomes were an increase in infection rate. We used random model Mantel-Haenszel meta-analysis with Cochrane risk of bias to assess the quality of included studies. The recommendation was presented using the GRADE framework. RESULTS: Seven out of 42 retrieved studies were included. Study population included patients with post-liver transplant, postsurgical, hypoxia-induced, ischemic and other nonalcoholic hepatitis. There was no difference in overall survival between NAC and placebo (odds ratio [OR] 0.95 [0.55 to 1.62]) in seven studies including 1033 patients. Furthermore, there was no difference in the rate of infection between NAC and placebo (OR 0.87 [0.43 to 1.79]). Random model analysis was used to adjust the effect of statistically significant heterogeneity in both analyses (P = 0.02). Lack of blinding in one study was found as a possible source of heterogeneity. CONCLUSIONS: NAC does not improve overall survival or the rate of infection in patients with acute nonacetaminophen, nonalcoholic and nonviral hepatitis as compared to placebo and should not be recommended in such setting which may even delay a transplant evaluation (level of evidence: 2a, GRADE of recommendation: B).

20.
Anal Chem ; 93(14): 5789-5796, 2021 04 13.
Artigo em Inglês | MEDLINE | ID: mdl-33788554

RESUMO

Conventional antibiotic susceptibility testing (AST) assays such as broth microdilution and Kirby-Bauer disk diffusion are time-consuming (e.g., 24-72 h) and labor-intensive. Here, we present a microfluidic platform to perform AST assays with a broad range of antibiotic concentrations and controls. A culture medium stream was serially enriched with antibiotics along the length of the platform via diffusion and flow-directing mass convection mechanisms, generating a concentration gradient captured in a series of microchamber duplicates. We observed an agreement between the simulated and experimental concentration gradients and applicability to a variety of different molecules by changing the loading time according to a simple linear equation. The AST assay in our platform is based on bacterial metabolism, indicated by resazurin fluorescence. The small reaction volume enabled a minimum inhibitory concentration (MIC) to be determined in 4-5 h. Proof-of-concept functionality testing, using human isolates and clinically important antibiotics from different classes, indicated a high rate of agreement (94%: MIC within ±1 two-fold dilution of the reference method) of on-chip MICs and conventional broth microdilution. Overall, our results showed that this microfluidic platform is capable of determining antibiotic susceptibility in a rapid and reliable manner.


Assuntos
Convecção , Microfluídica , Antibacterianos/farmacologia , Bactérias , Humanos , Testes de Sensibilidade Microbiana
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