Performance of Particle Swarm Optimization in Predicting the Orientation of π-Conjugated Molecules Inside Carbon Nanotubes Compared with Density Functional Theory Calculations.

Particle swarm optimization (PSO) was employed to obtain the global minimum of host-guest structures consisting of a triiodobenzene molecule (BzI3) inside an armchair (m,m) nanotube (BzI3@(m,m)), whose host-guest interactions are approximated by Lennard-Jones (LJ) potentials. The host-guest structures obtained using the PSO-LJ method were then compared with those obtained through dispersion-corrected density functional theory (DFT) calculations to evaluate the performance of the PSO-LJ approach in predicting the guest orientation inside a tube. When the inner space of the host tube is limited for guest encapsulation, the PSO-LJ method can reproduce the DFT results of BzI3@(m,m) in terms of the guest orientation. Conversely, in nanotubes with a sufficiently large space to allow a guest to freely move, corresponding to weak tube confinement, the PSO-LJ method yields guest orientations that are different from those obtained through DFT calculations; however, both methods obtain energetically close guest orientations. Accordingly, PSO-LJ method-assisted DFT calculations can quickly provide energetically stable guest orientations in BzI3@(m,m) in weak tube confinement, which can be ignored in DFT calculations, where a single initial geometry is typically used.

Experimental and Computational Insights into the Catalytic Mechanism of Y1-xBaxCoO3-δ Perovskite Oxides with a Controlled Crystal Structure.

The crystal structure of Co-based perovskite oxides (ACoO3) can be controlled by adjusting the A-site elements. In this study, we synthesized Y1-xBaxCoO3-δ (x = 0, 0.5, and 1.0) via a coprecipitation method and investigated their CO oxidation performances. YCoO3 (x = 0; cubic perovskite oxide; Pbnm) shows a higher catalytic performance than Y0.5Ba0.5CoO2.72 (x = 0.5; A-site-ordered double perovskite oxide; P4/nmm), which exhibits high oxygen nonstoichiometric properties, and BaCoO3 (x = 1.0; hexagonal perovskite oxide; P63/mmc), which contains high-valent Co4+ species. To elucidate the reaction mechanism, we conducted isotopic experiments with CO and 18O2. The CO oxidation reaction on YCoO3 proceeds via the Langmuir-Hinshelwood mechanism, which is a surface reaction of CO and O2 gas that does not utilize lattice oxygen. Because of the significantly smaller specific surface area of YCoO3 compared with that of the reference Pt/Al2O3, the bulk features of the crystal structures affect the catalytic reaction. When density functional theory is applied, YCoO3 clearly exhibits semiconducting properties in the ground state with the diamagnetic t2g6eg0 states, which can translate to a magnetic t2g5eg1 configuration upon excitation by a relatively low energy of 0.64 eV. We propose that the unique nature of YCoO3 activates oxygen in the gas phase, thereby enabling the smooth oxidation of CO. This study demonstrates that the bulk properties originating from the crystal structure contribute to the catalytic activity and reaction mechanism.

Experimental and Theoretical Studies on Cobalt-Catalyzed Regioselective Hydrosilylation of Tetrafluorinated Cyclohexa-1,3-dienes.

Cyclohexa-1,3-dienes bearing a tetrafluoroethylene group underwent highly regioselective hydrosilylation in the presence of 1-10 mol % Co2(CO)8 in 1,2-dichloroethane under mild conditions (reflux, 3 h), which led to an abundant yield of homoallylsilanes. Mechanistic studies proved that the reaction proceeds as per the modified Chalk-Harrod mechanism; via DFT calculation, the reason for homoallylsilanes being exclusively obtained was demonstrated. The formal synthesis of a tetrafluorinated negative-type liquid crystal demonstrated the synthetic utility of such hydrosilylation.

Roles of Carbon Nanotube Confinement in Modulating Regioselectivity of 1,3-Dipolar Cycloadditions.

DFT-based calculations were employed to investigate mechanisms of 1,3-dipolar cycloadditions between phenylacetylene and an azide (phenylazide or benzylazide) inside carbon nanotubes, whose diameters range from 10 to 14 Å, by obtaining their reaction species (reactant complex, transition state (TS), and product (Pro)). The reactions yield 1,4- and 1,5-triazoles, whose paths are denoted by 1,4- and 1,5-approaches, respectively. We found different geometrical features of reaction species between 1,4- and 1,5-approaches. Reflecting different reaction species, nanotube confinement has the power to enhance kinetically and thermodynamically controlled regioselectivity of 1,3-dipolar cycloadditions to form 1,4-triazoles. In inner 1,4-approaches, the reaction species have planar structures, being small relative to the cavity of tube hosts, and then, their activation energies are slightly lowered relative to those without tube surroundings, independent of the tube diameter. In inner 1,5-approaches, reaction species have phenyl groups overlapping each other, depending on the tube diameter: L-shaped and stacking fashions are found in thick and thin tubes, respectively. Particularly, the stacking fashion in thin tubes results in repulsive orbital interactions between two phenyl rings, destabilizing their TS and Pro. The presence of overlapping phenyl groups increases the activation energies in the 1,5-approaches with a decrease in the tube diameter, being larger than those without tube surroundings.

Theoretical understanding of stability of mechanically interlocked carbon nanotubes and their precursors.

Dispersion-corrected DFT calculations were performed on (a,a) nanotubes (a = 5-10) attached by a U-shaped functional group consisting of p-xylene-linked double 9,10-di(1,3-dithiol-2-ylidene)-9,10-dihydro anthracene terminated by CnH2n chains (n = 6, 8, and 9), and their ring-closing macrocycles containing tubes. The reactant precursors and macrocycles are denoted by UP-n-(a,a) and (a,a)@Cycle-n, respectively. We found that UP-n-(a,a) are energetically preferable relative to the dissociation limit toward a U-shaped functional group (UP-n) and a tube (initial state) due to the attractive CH-π and π-π interactions. The attractive interactions are enhanced by increasing the tube diameters and CnH2n chain lengths because UP-n structures can be easily adjusted to interact with the tubes. The stability of (a,a)@Cycle-n and related (a,b)@Cycle-n is sensitive to tube diameters due to the restriction of ring structures. When diameter differences between a Cycle-n and a tube (D-d) are larger than 5 Å, (a,a)@Cycle-n plus C2H4 are energetically preferable relative to the initial state. However, the (a,a)@Cycle-n plus C2H4 byproduct is always energetically unstable relative to UP-n-(a,a). The DFT calculations found that the energy differences were low at D-d values ranging from 7 to 8 Å, explaining the tube-diameter-selective formation of the mechanically-interlocked tubes, observed experimentally.

Ultralong Distance Hydrogen Spillover Enabled by Valence Changes in a Metal Oxide Surface.

Hydrogen spillover is a phenomenon in which hydrogen atoms generated on metal catalysts diffuse onto catalyst supports. This phenomenon offers reaction routes for functional materials. However, due to difficulties in visualizing hydrogen, the fundamental nature of the phenomenon, such as how far hydrogen diffuses, has not been well understood. Here, in this study, we fabricated catalytic model systems based on Pd-loaded SrFeOx (x ∼ 2.8) epitaxial films and investigated hydrogen spillover. We show that hydrogen spillover on the SrFeOx support extends over long distances (∼600 µm). Furthermore, the hydrogen-spillover-induced reduction of Fe4+ in the support yields large energies (as large as 200 kJ/mol), leading to the spontaneous hydrogen transfer and driving the surprisingly ultralong hydrogen diffusion. These results show that the valence changes in the supports' surfaces are the primary factor determining the hydrogen spillover distance. Our study leads to a deeper understanding of the long-debated issue of hydrogen spillover and provides insight into designing catalyst systems with enhanced properties.

Tetrachlorocatecholates of triarylarsines as a novel class of Lewis acids.

Pnictogen-mediated Lewis acidity is an emerging research subject in organic chemistry, supramolecular chemistry, etc. In contrast to the extensive studies on phosphorus and antimony, the diversity of arsenic-Lewis acids was quite limited. Herein, tetrachlorocatecholates of triarylarsines were newly synthesized. Their structures, electronic properties, and Lewis acidities were experimentally and computationally examined and compared with the corresponding phosphorus and antimony analogs. This is the first systematic study on the relationship between the structure and Lewis acidity of arsenic-mediated Lewis acids.

Tertiary arsine ligands for the Stille coupling reaction.

The Stille coupling reaction is one of the most important coupling reactions. It is well known that the triphenylarsine ligand can accelerate the reaction rate of Stille coupling. However, other arsine ligands have never been investigated for the Stille coupling reaction so far. In this work, we prepared 13 kinds of C3-symmetrical tertiary arsine ligands and discovered that tri(p-anisyl)arsine is the best ligand for the reaction of tributylvinyltin and p-iodoanisole. The reaction mechanism was studied by dispersion-corrected density functional theory calculations to demonstrate the energetic feasibility of the Stille coupling reactions mediated by tri(p-anisyl)arsine.

Homo- and hetero-metallophilicity-driven synthesis of highly emissive and stimuli-responsive Au(I)-Cu(I) double salts.

Complex salts composed of cationic Au(i) and anionic Cu(i) species were synthesized by utilizing bis(diphenylarsino)methane (dpam) and bis(diphenylphosphino)methane (dppm) ligands. The discrete tetranuclear complexes were obtained as crystals, and the four-metal chain, CuAuAuCu, was linked through homo- and hetero-metallophilic interactions. Three crystal polymorphs were obtained for the dpam- and dppm-complexes, depending on the recrystallization solvent. All the crystals exhibited intense phosphorescence (quantum yields up to 0.97) at room temperature, and the emission color of each crystal was significantly different. The crystals could be interconverted by exposure to solvent vapor, and this was accompanied by a drastic change in the emission color.

Dibenzoarsacrowns: an experimental and computational study on the coordination behaviors.

Dibenzoarsacrowns have been synthesized as a novel class of heteroatom-fused crown ethers. The dibenzoarsacrowns can size-selectively capture alkali metal cations, and the arsenic atoms chemoselectively coordinated to gold(i) chloride (AuCl) due to the soft Lewis acid-base interaction. It is notable that the AuCl complex of 21-dibenzoarsacrown-7 further encapsulated Na+ with the enhanced association constant from bare 21-dibenzoarsacrown-7. The positive allosteric effect was studied computationally.

Systematic Study on the Catalytic Arsa-Wittig Reaction.

Efficient catalytic arsa-Wittig reactions have been developed by using 1-phenylarsolane as a catalyst. A wide array of aldehydes was converted to the corresponding olefins in high yields with moderate to excellent E stereoselectivity in the presence of a catalytic amount of 1-phenylarsolane. Moreover, density functional theory calculations were carried out to afford insight into the E/Z selectivity.

Fluorinated porous molecular crystals: vapor-triggered on-off switching of luminescence and porosity.

A platinum diiodide complex with 9-pentafluorophenyl-9-arsafluorene formed a porous molecular crystal (PMC) or a non-porous molecular crystal (n-PMC), depending on the recrystallization solvents. Vapor exposure can cause reversible crystal-to-crystal transition between the PMC and the n-PMC. The PMC exhibits open-close switching of porosity as well as on-off switching of luminescence.

Room-Temperature Activation of the C-H Bond in Methane over Terminal ZnII-Oxyl Species in an MFI Zeolite: A Combined Spectroscopic and Computational Study of the Reactive Frontier Molecular Orbitals and Their Origins.

Oxygenase reactivity toward selective partial oxidation of CH4 to CH3OH requires an atomic oxygen-radical bound to metal (M-O•: oxyl intermediate) that is capable of abstracting an H atom from the significantly strong C-H bond in CH4. Because such a reaction is frequently observed in metal-doped zeolites, it has been recognized that the zeolite provides an environment that stabilizes the M-O• intermediate. However, no experimental data of M-O• have so far been discovered in the zeolite; thus, little is known about the correlation among the state of M-O•, its reactivity for CH4, and the nature of the zeolite environment. Here, we report a combined spectroscopic and computational study of the room-temperature activation of CH4 over ZnII-O• in the MFI zeolite. One ZnII-O• species does perform H-abstraction from CH4 at room temperature. The resultant CH3• species reacts with the other ZnII-O• site to form the ZnII-OCH3 species. The H2O-assisted extraction of surface methoxide yields 29 µmol g-1 of CH3OH with a 94% selectivity. The quantum mechanics (QM)/molecular mechanics (MM) calculation determined the central step as the oxyl-mediated hydrogen atom transfer which requires an activation energy of only 10 kJ mol-1. On the basis of the findings in gas-phase experiments regarding the CH4 activation by the free [M-O•]+ species, the remarkable H-abstraction reactivity of the ZnII-O• species in zeolites was totally rationalized. Additionally, the experimentally validated QM/MM calculation revealed that the zeolite lattice has potential as the ligand to enhance the polarization of the M-O• bond and thereby enables to create effectively the highly reactive M-O• bond required for low-temperature activation of CH4. The present study proposes that tuning of the polarization effect of the anchoring site over heterogeneous catalysts is the valuable way to create the oxyl-based functionality on the heterogeneous catalyst.

As-Heteropentacenes: An Experimental and Computational Study on a Novel Class of Heteroacenes.

Arsenic-containing heteropentacenes were synthesized for the first time; bibenzofuran, benzothienyl benzofuran, and bibenzothiophene were bridged by arsenic atoms. Their structures and properties were experimentally and computationally studied using X-ray crystallography, optical and electronic properties, aromaticity, charge carrier mobility, etc. The present findings on the novel class of heteroacenes will expand functional organic chemistry.

An antiparallel double-stranded BODIPY-porphyrin dyad assembled via a self-complementary B-FZn interaction.

An antiparallel double-strand of a BODIPY-zinc-porphyrin dyad was assembled via geometrical complementarity of an unusual B-FZn coordination bonding interaction.

Importance of the alignment of polar π conjugated molecules inside carbon nanotubes in determining second-order non-linear optical properties.

We employed density functional theory (DFT) calculations with dispersion corrections to investigate energetically preferred alignments of certain p,p'-dimethylaminonitrostilbene (DANS) molecules inside an armchair (m,m) carbon nanotube (n × DANS@(m,m)), where the number of inner molecules (n) is no greater than 3. Here, three types of alignments of DANS are considered: a linear alignment in a parallel fashion and stacking alignments in parallel and antiparallel fashions. According to DFT calculations, a threshold tube diameter for containing DANS molecules in linear or stacking alignments was found to be approximately 1.0 nm. Nanotubes with diameters smaller than 1.0 nm result in the selective formation of linearly aligned DANS molecules due to strong confinement effects within the nanotubes. By contrast, larger diameter nanotubes allow DANS molecules to align in a stacking and linear fashion. The type of alignment adopted by the DANS molecules inside a nanotube is responsible for their second-order non-linear optical properties represented by their static hyperpolarizability (ß0 values). In fact, we computed ß0 values of DANS assemblies taken from optimized n × DANS@(m,m) structures, and their values were compared with those of a single DANS molecule. DFT calculations showed that ß0 values of DANS molecules depend on their alignment, which decrease in the following order: linear alignment > parallel stacking alignment > antiparallel stacking alignment. In particular, a linear alignment has a ß0 value more significant than that of the same number of isolated molecules. Therefore, the linear alignment of DANS molecules, which is only allowed inside smaller diameter nanotubes, can strongly enhance their second-order non-linear optical properties. Since the nanotube confinement determines the alignment of DANS molecules, a restricted nanospace can be utilized to control their second-order non-linear optical properties. These DFT findings can assist in the design of nanotube-based materials exhibiting stronger non-linear optical properties.

Why do zeolites induce an unprecedented electronic state on exchanged metal ions?

Understanding the exact position and the detailed role of the Al array in zeolites is essential for elucidating the origin of unique properties that can be derived from the metal-ion exchanged in zeolite samples and for designing zeolite materials with high efficiency in catalytic and adsorption processes. In this work, we investigate, for the first time, the important role of the Al array in the reactivity observed on the metal-ion exchanged in zeolites on the basis of the calculation method by utilizing the spontaneous heterolytic cleavage of H2 observed experimentally on the Zn2+-ion exchanged in MFI-type zeolites (Zn2+-MFI) as the model reaction. In the case of calculation, two main types of models for considering the Al positions in MFI-type zeolites were adopted: in the first type, the Al atoms with appropriate distances are aligned in the circumferential direction of the straight channel (abbreviated as a circumferentially arrayed Al-Al site); in the second type, the nearest neighbouring Al atoms with appropriate distances are directed toward the straight channel axis (abbreviated as a channel directionally arrayed Al-Al site). Results indicated that the Al-array direction governs the reactivity of Zn2+-MFI. The former type of array well explains the experimental fact that spontaneous and irreversible heterolysis of H2 takes place on Zn2+-MFI, even at room temperature, whereas the latter type of array is less reactive; high activation energy is required for the heterolytic cleavage of H2 (ca. >70 kJ mol-1). A detailed analysis of the geometric and electronic structures of a series of Zn2+-MFI models with various Al-array directions clarified the following facts: the circumferentially arrayed Al-Al site induces an inevitable environment around the Zn2+ site, with the simultaneous existence of both a Lewis acid point (coordinatively unsaturated and distorted Zn2+) and a Lewis base point (the lattice oxygen atom juxtaposed with exchanged Zn2+, which participates in the activation of H2: OjL). It is the circumferentially arrayed Al-Al atoms that confer acidic and basic nature on the metal ion and the lattice oxygen atom (OjL), and ultimately trigger the heterolytic dissociation of H2, even at 300 K.

Identification of a Stable ZnII -Oxyl Species Produced in an MFI Zeolite and Its Reversible Reactivity with O2 at Room Temperature.

Although a terminal oxyl species bound to certain metal ions is believed to be the intermediate for various oxidation reactions, such as O-O bond generation in photosystem II (PSII), such systems have not been characterized. Herein, we report a stable ZnII -oxyl species induced by an MFI-type zeolite lattice and its reversible reactivity with O2 at room temperature. Its intriguing characteristics were confirmed by in situ spectroscopic studies in combination with quantum-chemical calculations, namely analyses of the vibronic Franck-Condon progressions and the ESR signal features of both ZnII -oxyl and ZnII -ozonide species formed during this reversible process. Molecular orbital analyses revealed that the reversible reaction between a ZnII -oxyl species and an O2 molecule proceeds via a radical O-O coupling-decoupling mechanism; the unpaired electron of the oxyl species plays a pivotal role in the O-O bond generation process.

Control of aurophilic interaction: conformations and electronic structures of one-dimensional supramolecular architectures.

Gold(i) chloride complexes with the diarsenic ligands cis-1,4-dihydro-1,4-diarsinines (cis-DHDAs) were synthesized. X-ray diffraction revealed that they formed one-dimensional polymeric structures through aurophilic interactions. Their higher-ordered structures are controlled by the ligand structure; methyl- and t-butyl substituted ligands offered transoid-transoid and transoid-cisoid conformations, respectively. Density functional theory (DFT) calculations indicated that the electronic structure of the aurophilic network was highly dependent on the conformations. This is the first study on the relationship between the chain conformation and 5d-orbital structures of gold complexes.

One-dimensional nanowires of pseudoboehmite (aluminum oxyhydroxide γ-AlOOH).

We report the discovery of a 1D crystalline structure of aluminum oxyhydroxide. It was found in a commercial product of fibrous pseudoboehmite (PB), γ-AlOOH, synthesized easily with low cost. The thinnest fiber found was a ribbon-like structure of only two layers of an Al-O octahedral double sheet having a submicrometer length along its c axis and 0.68-nm thickness along its b axis. This thickness is only slightly larger than half of the lattice parameter of the b-axis unit cell of the boehmite crystal (b/2 = 0.61 nm). Moreover, interlayer splittings having an average width of 1 nm inside the fibrous PB are found. These wider interlayer spaces may have intercalation of water, which is suggested by density functional theory (DFT) calculation. The fibers appear to grow as almost isolated individual filaments in aqueous Al-hydroxide sols and the growth direction of fibrous PB is always along its c axis.